TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000074_2.0 # Protein # Selenoprotein I (SELENOI) # Human Length=397 Score E Sequences producing significant alignments: (Bits) Value JSZB01006584.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7553, ... 143 3e-34 JSZB01002192.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2447, ... 65.5 3e-09 JSZB01008123.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9410, ... 62.4 2e-08 JSZB01015453.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18661,... 40.0 0.21 > JSZB01006584.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7553, whole genome shotgun sequence Length=81918 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/91 (95%), Positives = 88/91 (97%), Gaps = 0/91 (0%) Frame = -2 Query 101 YTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGvsvfvlylll 160 + DGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRG +GVSVFVLYLLL Sbjct 48974 FVADGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGPSGVSVFVLYLLL 48795 Query 161 wvvlfsfILSHWEKYNTGILFLPWGYDISQV 191 WVVLFSFILSHWEKYNTGILFLPWGYDISQV Sbjct 48794 WVVLFSFILSHWEKYNTGILFLPWGYDISQV 48702 Score = 120 bits (300), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 58/72 (81%), Positives = 63/72 (88%), Gaps = 0/72 (0%) Frame = -3 Query 242 FFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFA 301 FFRSYKNNTLK +SVYEAMVP FSPCLLFILSTAWIL SPS+ILE+HPRVFYFMVGTAFA Sbjct 38638 FFRSYKNNTLKHSSVYEAMVPFFSPCLLFILSTAWILQSPSNILEIHPRVFYFMVGTAFA 38459 Query 302 NSTCQLIVCQMS 313 NST + + S Sbjct 38458 NSTVRFFFFEKS 38423 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/38 (95%), Positives = 37/38 (97%), Gaps = 0/38 (0%) Frame = -3 Query 42 KVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA 79 +VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS Sbjct 54334 QVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASG 54221 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/42 (86%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = -3 Query 192 TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCV 233 TIS VYIVT++VGVEAWYEPFLFNFLYRDLFTAMIIG L V Sbjct 47755 TISLVYIVTSIVGVEAWYEPFLFNFLYRDLFTAMIIGKKLHV 47630 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/32 (97%), Positives = 31/32 (97%), Gaps = 0/32 (0%) Frame = -1 Query 366 VKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL 397 VKQLSSHFQIYPFSLRKPNSD LGMEEKNIGL Sbjct 33885 VKQLSSHFQIYPFSLRKPNSD*LGMEEKNIGL 33790 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/72 (83%), Positives = 64/72 (89%), Gaps = 0/72 (0%) Frame = -3 Query 301 ANSTCQLIVCQMSSTRCPTLNWllvplflvvlvvnlgvASYVESIllytlttaftlaHIH 360 N CQLIVCQMSSTRCPTLNWLLVPLFLVV+VVNLGVAS +ESILLYTLTTAFTLAH+H Sbjct 37282 TNFKCQLIVCQMSSTRCPTLNWLLVPLFLVVVVVNLGVASNLESILLYTLTTAFTLAHVH 37103 Query 361 YGVRVVKQLSSH 372 YGVRVV L + Sbjct 37102 YGVRVVSNLGQN 37067 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/38 (68%), Positives = 31/38 (82%), Gaps = 4/38 (11%) Frame = -3 Query 78 SAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTN 115 +APGHKHVPDWVWI+VGILNF AYTL GK++ T+ Sbjct 52057 AAPGHKHVPDWVWIIVGILNFTAYTL----GKKSANTH 51956 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/25 (88%), Positives = 25/25 (100%), Gaps = 0/25 (0%) Frame = -3 Query 19 KYSAVDTNPLSLYVMHPFWNTIVKV 43 +YSA+DTNPLSLYVMHPFWN+IVKV Sbjct 54853 QYSALDTNPLSLYVMHPFWNSIVKV 54779 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/35 (66%), Positives = 25/35 (71%), Gaps = 2/35 (6%) Frame = -2 Query 1 MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHP 35 MAGYEYVSPEQLAGFDKYK P LY++ P Sbjct 72380 MAGYEYVSPEQLAGFDKYKVVRAPRTP--LYLLAP 72282 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/18 (94%), Positives = 18/18 (100%), Gaps = 0/18 (0%) Frame = -3 Query 227 IGCALCVTLPMSLLNFFR 244 +GCALCVTLPMSLLNFFR Sbjct 40213 LGCALCVTLPMSLLNFFR 40160 > JSZB01002192.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2447, whole genome shotgun sequence Length=128947 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/48 (60%), Positives = 34/48 (71%), Gaps = 0/48 (0%) Frame = -2 Query 85 VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 132 P W +I F+ +LD +DGKQARRTNSS+PLGELFDHG DS S Sbjct 117468 APLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS 117325 > JSZB01008123.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9410, whole genome shotgun sequence Length=60180 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/48 (56%), Positives = 34/48 (71%), Gaps = 0/48 (0%) Frame = +1 Query 85 VPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 132 P W ++ + F+ +LD +DGKQARRTNS +PLGELFDHG DS S Sbjct 47749 APYWTYLFCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLS 47892 > JSZB01015453.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18661, whole genome shotgun sequence Length=112293 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = -2 Query 7 VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL 66 +S QL ++++Y + + L +M +W +V P+W+APNLIT G + + + Sbjct 5315 LSRHQLKRLEEHRYQSAGRSLLE-PLMQGYWEWLVGRVPSWIAPNLITIIGLSINICTTV 5139 Query 67 LMAYFDPDFYASAPGH 82 L+ ++ P G+ Sbjct 5138 LLVFYCPTATEQVRGN 5091 Lambda K H a alpha 0.327 0.141 0.463 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 221336931024 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40