_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-36
 Query name: gi|965880151|ref|XP_014965057.1| PREDICTED: selenoprotein H isoform X2 [Ovis aries musimon]
 Query range: 1-164  (total 164)

 Target: /data/www-rg/seblastian_results/545345002/tempfiles/temptarget.fasta
 Chromosome: JSZB01009980.1:subseq_26642,101000_ Strand: -
 Positions:
 -Exon 1  50441        50559
 -Exon 2  50183        50357
 -Exon 3  49976        50083

 Redox box: YES

Query   MASRGRKRKAEAALAAAAEKREKPAGSREGEVAGPSVVIEHC <---Intron---> TSURVYGRNAAALSQALRLQAPELAVKVNPSRPRRGSFEVTL
        ||||||||||||| | | ||||| |  ||| |   /|||||| <    83bp    > |||||||||||||||||||/||/| |/|||//||||||||||
Target  MASRGRKRKAEAA-AVAVEKREKLASGREG-VEEAAVVIEHC                TSURVYGRNAAALSQALRLEAPQLPVRVNPAKPRRGSFEVTL
        agtcgaacagggg-gggggacgatgagcgg-gggggggagct                aatcgtgcagggcacgcccggccccgagacgaccagatggac
        tccgggagacacc-ctctaagaatcgggag-taacctttaag                cgggtaggaccctgactgtaccatctgtaccacggggtatct
        gtccgggcgggag-gggcggagagtccaga-ggggcctagt                cccacccgcccgcgcgggcggcgggagggctcacggcccgggg
                                                                    *                                       

Query   LRADGSSECGAGAGAG <---Intron---> QRGRPDRRLPVASGNGCRVPEPLLFTWPFFPGAELWTGLKKGPPRKLKFPEPHVVLEELKKYLS
        || ||||| | |/||| <    99bp    >                              ||| |||||/|||||||||||||  |/||||||||
Target  LRPDGSSEWGPGSGAG                ----------------------------LFPGVELWTGVKKGPPRKLKFPEPEEVVEELKKYLS
        cccggaagtgcgtggg                ----------------------------ctcgggctaggaagcccacatcgcggggggcaatct
        tgcagggaggcgcgcg                ----------------------------ttcgtatgcgtaagccgatatcacaattaataaatc
        gcgccctgggcgtgag                ----------------------------tcatggcgggtgggcacacgctgtaggggggggcgg
                                                                                                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 746 ; UGA-SECIS: 1019

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01009980.1:subseq_26642,101000_ Strand = - Positions = 49229 - 49167
 Found by:  Infernal (score=27.34) Covels (score=24.86)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -15.2

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((([((---(...([[{(({(((((((......--------...)))))))}))}]])..--.--)))])))...
 target  GUUGGAACA---UUUAUGACGGGACGUGGCCAAACC--------UCAGCCAUGUGCCUGAAGC--U--GUGGUUUCUC
                         ****           ^^^                       ****