Command line: [exonerate -m p2g --showtargetgff -q SELENOH.fa.txt -t SELENOH.subseq.txt]
Hostname: [ws116044u]

C4 Alignment:
------------
         Query: SPP00000070_2.0 # Protein # Selenoprotein H (SELENOH) # Human 
        Target: JSZB01009980.1:subseq(26642,101000) Manis javanica isolate MP_PG03-UM SCAFFOLD11697, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 517
   Query range: 0 -> 121
  Target range: 50559 -> 49978

     1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGluLys :    20
         |||||| !!||||||||||||||||||||||||||||||!.!|||||||||   ||||||
         MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaAlaValAlaVal---GluLys
 50559 : ATGGCTTCCCGCGGGAGGAAGCGCAAGGCGGAGGCAGCGGCGGTGGCGGTC---GAGAAG : 50505

    21 : ArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValValIleGluHis :    40
         |||||||||||||||!:!||| !!||||||:!!|||||||||.!!|||||||||||||||
         ArgGluLysLeuAlaSerGlyArgGluGlyValGluGluAlaAlaValValIleGluHis
 50504 : CGAGAGAAATTGGCTAGCGGCCGAGAGGGAGTGGAGGAGGCGGCCGTCGTTATAGAGCAT : 50445

    41 : {Cy}  >>>> Target Intron 1 >>>>  {s}ThrSerUnkArgValTyrGlyArg :    49
         {||}            83 bp            {|}||||||   |||||||||||||||
         {Cy}++                         ++{s}ThrSer***ArgValTyrGlyArg
 50444 : {TG}gt.........................ag{C}ACCAGCTGACGCGTCTACGGGCGC : 50335

    50 : AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGluLeuProValLysVal :    69
         ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||!:!|||
         AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGlnLeuProValArgVal
 50334 : AACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCGCAGCTGCCAGTGAGGGTG : 50275

    70 : AsnProThrLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer :    89
         ||||||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnProAlaLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer
 50274 : AACCCTGCCAAACCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACGGCAGC : 50215

    90 : {S}  >>>> Target Intron 2 >>>>  {er}AlaGluLeuTrpThrGlyIleLys :    98
         {|}            138 bp           {||}!.!|||||||||||||||:!!|||
         {S}++                         ++{er}ValGluLeuTrpThrGlyValLys
 50214 : {A}gt.........................ag{GT}GTGGAGCTCTGGACGGGGGTTAAG : 50050

    99 : LysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGluLeuLys :   118
         ||||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||
         LysGlyProProArgLysLeuLysPheProGluProGluGluValValGluGluLeuLys
 50049 : AAGGGGCCCCCACGCAAACTCAAGTTCCCTGAGCCTGAAGAGGTGGTGGAGGAGCTGAAG : 49990

   119 : LysTyrLeu :   121
         |||||||||
         LysTyrLeu
 49989 : AAGTACCTG : 49979

vulgar: SPP00000070_2.0 0 121 . JSZB01009980.1:subseq(26642,101000) 50559 49978 - 517 M 17 51 G 1 0 M 22 66 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 134 3 0 2 S 1 2 M 31 93
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	gene	49979	50559	517	-	.	gene_id 1 ; sequence SPP00000070_2.0 ; gene_orientation +
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	cds	50441	50559	.	-	.	
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	exon	50441	50559	.	-	.	insertions 0 ; deletions 1
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	splice5	50439	50440	.	-	.	intron_id 1 ; splice_site "GT"
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	intron	50358	50440	.	-	.	intron_id 1
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	splice3	50358	50359	.	-	.	intron_id 0 ; splice_site "AG"
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	cds	50212	50357	.	-	.	
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	exon	50212	50357	.	-	.	insertions 0 ; deletions 0
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	splice5	50210	50211	.	-	.	intron_id 2 ; splice_site "GT"
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	intron	50074	50211	.	-	.	intron_id 2
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	splice3	50074	50075	.	-	.	intron_id 1 ; splice_site "AG"
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	cds	49979	50073	.	-	.	
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	exon	49979	50073	.	-	.	insertions 0 ; deletions 0
JSZB01009980.1:subseq(26642,101000)	exonerate:protein2genome:local	similarity	49979	50559	517	-	.	alignment_id 1 ; Query SPP00000070_2.0 ; Align 50560 1 51 ; Align 50509 19 66 ; Align 50357 42 144 ; Align 50072 91 93
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis