TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000070_2.0 # Protein # Selenoprotein H (SELENOH) # Human

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01009980.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11697,...    107   2e-25


> JSZB01009980.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11697, 
whole genome shotgun sequence
Length=217059

 Score =   107 bits (268),  Expect(2) = 2e-25, Method: Compositional matrix adjust.
 Identities = 73/127 (57%), Positives = 77/127 (61%), Gaps = 46/127 (36%)
 Frame = -1

Query  41     CTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS----------  90
               TS RVYGRNAAALSQALRLEAP+LPV+VNP KPRRGSFEVTLLRPDGSS          
Sbjct  77001  STS*RVYGRNAAALSQALRLEAPQLPVRVNPAKPRRGSFEVTLLRPDGSSEWGPGSGAGA  76822

Query  91     ------------------------------------AELWTGIKKGPPRKLKFPEPQEVV  114
                                                   ELWTG+KKGPPRKLKFPEP+EVV
Sbjct  76821  WFRGEEAPVSAAVTR*LWRDGGGFPINFAFLGLFPGVELWTGVKKGPPRKLKFPEPEEVV  76642

Query  115    EELKKYL  121
              EELKKYL
Sbjct  76641  EELKKYL  76621


 Score = 29.3 bits (64),  Expect(2) = 2e-25, Method: Compositional matrix adjust.
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = -2

Query  24     LANGGEGMEEATVVIEH  40
              LA+G EG+EEA VVIEH
Sbjct  77135  LASGREGVEEAAVVIEH  77085



Lambda      K        H        a         alpha
   0.313    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21034555475


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40