TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002942_2.0 # Protein # selenium binding protein 1 (SELENBP1) # Human Length=514 Score E Sequences producing significant alignments: (Bits) Value JSZB01063071.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102260... 130 3e-30 JSZB01014514.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17458,... 124 9e-28 JSZB01006124.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6993, ... 37.7 1.6 > JSZB01063071.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102260, whole genome shotgun sequence Length=1979 Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 113/198 (57%), Gaps = 31/198 (16%) Frame = +1 Query 270 LYVWDWQRHEIVQTLSL-KDGLIPLEIRFLHNPDAAQGFVGCALSST-----IQRFYKNE 323 ++ WD + VQT+ L + + LE+R H+P GF+G + +T I +++ E Sbjct 919 IHFWDLRARRNVQTIDLGANHQMALEVRPAHDPSREYGFIGVVVDTTNLEGSIWTWWR-E 1095 Query 324 GGTWSVEKVIQVPPKKVKGWLLP-------EMPGLITDILLSLDDRFLYFSNWLHGDLRQ 376 G + +EK +PP+ LLP +P L+TDI LS+DD+FLY + W G+LRQ Sbjct 1096 DGKFHIEKTATIPPEPAAAELLPPLLQGFGAVPPLVTDIDLSIDDKFLYVACWGTGELRQ 1275 Query 377 YDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSL 436 YD+++P++P+LTG + +GG + + P P G+ AGGPQM+++S Sbjct 1276 YDVTEPRKPKLTGSVHIGGIV--------------RRTPHP---NGQAFAGGPQMVEISR 1404 Query 437 DGKRLYITTSLYSAWDKQ 454 DGKR+Y T SLYS WD Q Sbjct 1405 DGKRVYWTNSLYSTWDNQ 1458 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 55/102 (54%), Gaps = 8/102 (8%) Frame = +3 Query 118 GWNTCSSCF----GDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKC 173 GWN CSS G + R L++P + SSRIY+VD P ++HK+IEP++I K Sbjct 429 GWNACSSSLSPLTGHAFLERRYLIIPGMRSSRIYIVDTKPHPTQARIHKIIEPEEIFRKT 608 Query 174 ELAFLHTSHCLASGEVMISSLGDVKGNGKG---GFVLLDGET 212 + HT HC G + +S+LG +G G ++D ET Sbjct 609 GYSRPHTVHCGPEG-IYVSTLGGGGKDGTDGPPGIFIMDCET 731 > JSZB01014514.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17458, whole genome shotgun sequence Length=208431 Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 56/68 (82%), Positives = 61/68 (90%), Gaps = 0/68 (0%) Frame = -2 Query 202 KGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADV 261 GGFVLLDGETFEVKGTWERPGG+AP+GYDFWYQPRHNVMISTEWAAPN+ ++GFN ADV Sbjct 89207 SGGFVLLDGETFEVKGTWERPGGSAPMGYDFWYQPRHNVMISTEWAAPNIFQNGFNLADV 89028 Query 262 EAGLYGSH 269 EAG H Sbjct 89027 EAGENSPH 89004 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 58/63 (92%), Positives = 60/63 (95%), Gaps = 0/63 (0%) Frame = -2 Query 100 QVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPK 159 QVIHRLPMP LKDELHHSGWNTCSSCFGDSTKSR KLVLP+LISS IYVVDVGSEPRAPK Sbjct 91358 QVIHRLPMPGLKDELHHSGWNTCSSCFGDSTKSRNKLVLPALISSCIYVVDVGSEPRAPK 91179 Query 160 LHK 162 L+K Sbjct 91178 LYK 91170 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 54/60 (90%), Positives = 58/60 (97%), Gaps = 0/60 (0%) Frame = -3 Query 264 GLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNE 323 GLYGSHL+VWDWQRHE+VQTL+L+DGLIPLEIRFLHNPDA QGFVGCALSS IQRFYKNE Sbjct 88753 GLYGSHLHVWDWQRHEMVQTLTLQDGLIPLEIRFLHNPDATQGFVGCALSSNIQRFYKNE 88574 Score = 86.3 bits (212), Expect(2) = 6e-26, Method: Compositional matrix adjust. Identities = 41/43 (95%), Positives = 42/43 (98%), Gaps = 0/43 (0%) Frame = -3 Query 349 PGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQL 391 PGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRP LTGQ+ Sbjct 87964 PGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPCLTGQV 87836 Score = 56.6 bits (135), Expect(2) = 6e-26, Method: Compositional matrix adjust. Identities = 25/28 (89%), Positives = 27/28 (96%), Gaps = 0/28 (0%) Frame = -2 Query 323 EGGTWSVEKVIQVPPKKVKGWLLPEMPG 350 +GGTWS EKVIQVPPKKVKGW+LPEMPG Sbjct 88133 QGGTWSAEKVIQVPPKKVKGWMLPEMPG 88050 Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/54 (94%), Positives = 54/54 (100%), Gaps = 0/54 (0%) Frame = -1 Query 461 REGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 514 REGSVMLQ++VDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIW+ Sbjct 87024 REGSVMLQINVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 86863 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/143 (42%), Positives = 66/143 (46%), Gaps = 68/143 (48%) Frame = -3 Query 27 AFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKG----------------------- 63 A LQS+ QP RPI STATKCG CGPGY+TPLEAMKG Sbjct 91990 ASALQSMVQPTRPIVSTATKCGKCGPGYATPLEAMKGKSESQHP*EE*LRASTPGRNCKT 91811 Query 64 -----------------------PREEIVYLP----------------------CIYRNT 78 PR +++LP CIYRNT Sbjct 91810 APSTDATAGGGGRPQMPPPPSGTPRAALLFLPTLLSPLTAFSPPGPREEIVYLPCIYRNT 91631 Query 79 GTEAPDYLATVDVDPKSPQYCQV 101 G EAPDYLATVD+DPKSPQYCQV Sbjct 91630 GIEAPDYLATVDIDPKSPQYCQV 91562 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/41 (95%), Positives = 40/41 (98%), Gaps = 0/41 (0%) Frame = -3 Query 421 KGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIR 461 KGKRV GGPQMIQLSLDGKRLY+TTSLYSAWDKQFYPDLIR Sbjct 87343 KGKRVVGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIR 87221 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/42 (74%), Positives = 36/42 (86%), Gaps = 0/42 (0%) Frame = -1 Query 162 KVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG 203 +V+E KDIH KC L +LHTSHCLASGEVM+S+LGD GNGKG Sbjct 90492 QVVESKDIHTKCGLGYLHTSHCLASGEVMVSTLGDPDGNGKG 90367 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/34 (91%), Positives = 33/34 (97%), Gaps = 0/34 (0%) Frame = -2 Query 390 QLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGK 423 QLFLGGSIVKGGPVQVLED+ELKSQPEPLVVK + Sbjct 87575 QLFLGGSIVKGGPVQVLEDQELKSQPEPLVVKVR 87474 > JSZB01006124.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6993, whole genome shotgun sequence Length=160306 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/55 (44%), Positives = 28/55 (51%), Gaps = 5/55 (9%) Frame = -3 Query 120 NTC-----SSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDI 169 NTC SS F S + R +L+LPSL +Y D SE R K EPKDI Sbjct 78800 NTCICWTSSSFFWKSVRERIQLLLPSLPFQLVYTKDRASETREQWDLKAKEPKDI 78636 Lambda K H a alpha 0.319 0.139 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 317691492512 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40