Command line: [exonerate -m p2g --showtargetgff -q SECp43.aa.fa -t SECp43_JSZB01005395.1.subseq.fa] Hostname: [ws101084U] C4 Alignment: ------------ Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human Target: JSZB01005395.1:subseq(55973,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD6155, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 171 -> 243 Target range: 50486 -> 50699 172 : ValAlaIleProLysAlaSerArgValLysProValGluTyrSerGlnMetTyrSerTyr : 191 :!!||||||||||||!.!!!!! !||||||||||||||||||||| !!||||||! !||| MetAlaIleProLysValArgLeuValLysProValGluTyrSer***MetTyrIleTyr 50487 : ATGGCAATCCCTAAAGTGAGACTTGTTAAGCCAGTGGAATACAGTTAGATGTACATTTAC : 50544 192 : SerTyrAsnGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpGlyTyrAspGln : 211 !!!|||!:! !! !! !||||||!:! !!||||||! !||| !!||||||! !||| !! ArgTyrSerTrpCysCysGlnGlnPhe***AsnTyrSerAla***TrpGlyCysAsp*** 50545 : AGATACAGCTGGTGTTGTCAGCAGTTCTAGAACTACTCTGCCTAGTGGGGCTGTGACTAG : 50604 212 : AsnThrGlySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGlnSerThrMetGln : 231 ||||||||||||:!!||||||:!!|||||||||||||||:!!||||||||||||||| AsnThrGlySerHisSerTyrAlaTyrProGlnTyrGlyHisThrGlnSerThrMetGly 50605 : AACACTGGCAGCCACAGCTATGCTTACCCTCAGTATGGACATACCCAGAGCACCATGGGT : 50664 232 : ThrTyrGluGluValGlyAspAspAlaLeuGluAsp : 243 |||||||||!!: |||!!:|||!.!|||! ||| ThrTyrGluAsp---GlyGluAspValLeuGlyAsp 50665 : ACATATGAAGAT---GGAGAGGATGTACTGGGTGAC : 50699 vulgar: SPP00000146_2.0 171 243 . JSZB01005395.1:subseq(55973,100000) 50486 50699 + 219 M 64 192 G 1 0 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-03 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local gene 50487 50699 219 + . gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local cds 50487 50699 . + . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local exon 50487 50699 . + . insertions 0 ; deletions 1 JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local similarity 50487 50699 219 + . alignment_id 1 ; Query SPP00000146_2.0 ; Align 50487 172 192 ; Align 50679 237 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human Target: JSZB01005395.1:subseq(55973,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD6155, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 0 -> 63 Target range: 49999 -> 50188 1 : MetAlaAlaSerLeuTrpMetGlyAspLeuGluProTyrMetAspGluAsnPheIleSer : 20 |||! !|||||||||||||||||||||:!!|||||||||:!! !!:!!..! !!|||||| MetGluAlaSerLeuTrpMetGlyAspMetGluProTyrValTyrLysArgValIleSer 50000 : ATGGAAGCAAGTTTGTGGATGGGTGACATGGAGCCTTATGTGTATAAGCGCGTCATCTCC : 50057 21 : ArgAlaPheAlaThrMetGlyGluThrValMetSerValLysIleIleArgAsnArgLeu : 40 |||||||||||||||:!!|||||||||:!!! !|||..!:!!||||||! !|||!.!!!! ArgAlaPheAlaThrLeuGlyGluThrIleLysSerThrGluIleIleLeuAsnAsnPhe 50058 : AGAGCCTTTGCCACTTTGGGGGAGACCATCAAGAGCACTGAAATTATCCTGAACAACTTC : 50117 41 : ThrGlyIleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGluLys : 60 ||||||||||||||| !! !!! |||||||||||| ! !!||||||! !!.!|||||| ThrGlyIleProAlaHisSer***PheValGluPheArgHisLeuAlaIleValGluLys 50118 : ACTGGGATCCCAGCTCACTCCTGATTTGTAGAGTTCAGACATTTGGCTATAGTTGAGAAG : 50177 61 : CysLeuHis : 63 !|||||| HisLeuHis 50178 : CATTTACAT : 50188 vulgar: SPP00000146_2.0 0 63 . JSZB01005395.1:subseq(55973,100000) 49999 50188 + 195 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-03 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local gene 50000 50188 195 + . gene_id 2 ; sequence SPP00000146_2.0 ; gene_orientation . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local cds 50000 50188 . + . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local exon 50000 50188 . + . insertions 0 ; deletions 0 JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local similarity 50000 50188 195 + . alignment_id 2 ; Query SPP00000146_2.0 ; Align 50000 1 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human Target: JSZB01005395.1:subseq(55973,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD6155, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 114 -> 158 Target range: 50322 -> 50454 115 : PhePheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGlnThrGly : 134 |||||||||!!.:!!||||||||| !!:!||||||! !|||:!!|||||||||! !||| PhePheValAsnIleTyrProSerThrGlnGlyGlyMetValIleLeuAspGlnMetGly 50323 : TTCTTTGTCAACATCTACCCCTCCACTCAGGGAGGCATGGTGATTTTGGACCAGATGGGT : 50380 135 : ValSerLysGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnLysArgAlaLeu : 154 |||||||||! !||||||||||||!:!||| !||||||||||||||||||!:!.!!||| ValSerLysValTyrGlyPheValArgPheGlnAspGluLeuGluGlnLysGlnThrLeu 50381 : GTGTCTAAGGTCTATGGTTTTGTGAGATTCCAGGATGAACTGGAACAGAAGCAAACTCTG : 50440 155 : ThrGluCysGln : 158 ||||||! !||| ThrGluTyrGln 50441 : ACAGAGTACCAG : 50454 vulgar: SPP00000146_2.0 114 158 . JSZB01005395.1:subseq(55973,100000) 50322 50454 + 163 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-03 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local gene 50323 50454 163 + . gene_id 3 ; sequence SPP00000146_2.0 ; gene_orientation . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local cds 50323 50454 . + . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local exon 50323 50454 . + . insertions 0 ; deletions 0 JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local similarity 50323 50454 163 + . alignment_id 3 ; Query SPP00000146_2.0 ; Align 50323 115 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human Target: JSZB01005395.1:subseq(55973,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD6155, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 253 -> 287 Target range: 50718 -> 50820 254 : AsnLysGluPheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTrp : 273 :!!||||||! !! ||||||||||||! !|||! !|||||||||! !||| !!||| ! AspLysGluSerArgGluGlnSerGluAlaLeuCysAspAlaLeuThrAspSerHisGln 50719 : GACAAGGAGTCCAGAGAGCAGAGTGAGGCGCTGTGTGATGCACTGACGGACAGTCACCAG : 50776 274 : GlnProLeuAspThrValSerSerGluIleProAlaMetMet : 287 ||||||||| !!|||||||||||||||||| !!|||! !||| GlnProLeuHisThrValSerSerGluIleSerAlaThrMet 50777 : CAGCCCCTACACACAGTGTCTTCAGAGATCTCTGCCACGATG : 50820 vulgar: SPP00000146_2.0 253 287 . JSZB01005395.1:subseq(55973,100000) 50718 50820 + 100 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-03 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local gene 50719 50820 100 + . gene_id 4 ; sequence SPP00000146_2.0 ; gene_orientation . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local cds 50719 50820 . + . JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local exon 50719 50820 . + . insertions 0 ; deletions 0 JSZB01005395.1:subseq(55973,100000) exonerate:protein2genome:local similarity 50719 50820 100 + . alignment_id 4 ; Query SPP00000146_2.0 ; Align 50719 254 102 # --- END OF GFF DUMP --- # -- completed exonerate analysis