TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002941_2.0 # Protein # selenocysteine lyase (SCLY) # Human Length=453 Score E Sequences producing significant alignments: (Bits) Value JSZB01032272.1 Manis javanica isolate MP_PG03-UM SCAFFOLD42801,... 92.0 1e-17 JSZB01000242.1 Manis javanica isolate MP_PG03-UM SCAFFOLD269, w... 51.2 9e-05 JSZB01017980.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22055,... 35.8 5.2 > JSZB01032272.1 Manis javanica isolate MP_PG03-UM SCAFFOLD42801, whole genome shotgun sequence Length=151019 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/55 (78%), Positives = 50/55 (91%), Gaps = 0/55 (0%) Frame = +3 Query 213 PVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHK 267 P+ EISQRIKA N++R A+GLP + +HTDAAQALGK+RVDVEDLGVDFLTIVGHK Sbjct 87303 PIAEISQRIKAENRKRAASGLPLVFLHTDAAQALGKRRVDVEDLGVDFLTIVGHK 87467 Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/61 (74%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Frame = +1 Query 393 GAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLEDQ 452 G+ C +PSPVLLS G+PF VA+NA+RLSVGRSTTRAEVDLVVQDLKQAVA LE Q Sbjct 101329 GS*CQLPRPSRPSPVLLSSGIPFGVAQNAIRLSVGRSTTRAEVDLVVQDLKQAVAWLEGQ 101508 Query 453 A 453 A Sbjct 101509 A 101511 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 0/61 (0%) Frame = +2 Query 109 ESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPLEHLVEEQV 168 ++NNLVIHS VKHFH + KG HSP GA PHFIT +VEHDS+RLPLEHLVEE V Sbjct 83879 QANNLVIHSAVKHFHETHSLKGDAAERHSPAAGAAPHFITCTVEHDSVRLPLEHLVEEHV 84058 Query 169 A 169 A Sbjct 84059 A 84061 Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 37/39 (95%), Positives = 38/39 (97%), Gaps = 0/39 (0%) Frame = +2 Query 38 RKVYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAG 76 RKVYMDYNATTPLEPEVIQAMT+AMWEAWGNPSSPY AG Sbjct 74501 RKVYMDYNATTPLEPEVIQAMTEAMWEAWGNPSSPYLAG 74617 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/38 (87%), Positives = 35/38 (92%), Gaps = 0/38 (0%) Frame = +1 Query 266 HKFYGPRIGALYIRGLGEFTPLYPMLFGGGQERNFRPG 303 +FYGPRIGALY+RGLGE PLYPMLFGGGQERNFRPG Sbjct 88372 FQFYGPRIGALYVRGLGELIPLYPMLFGGGQERNFRPG 88485 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/42 (79%), Positives = 40/42 (95%), Gaps = 0/42 (0%) Frame = +3 Query 171 VTFVPVSKVSGQAEVDDILAAVRPTTRLVTIMLANNETGIVM 212 VTFVPVSKV+G+AE +DILAAVRP+T LVT+MLANNETG++M Sbjct 86973 VTFVPVSKVNGRAEAEDILAAVRPSTCLVTVMLANNETGVIM 87098 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 59/104 (57%), Gaps = 18/104 (17%) Frame = +2 Query 342 LEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAA--CHSD 399 L+AEF RIHLNSQFPGT+RLPNTCNFSIRGP L+G + L+ SV +A CH Sbjct 97694 LQAEF-DGRIHLNSQFPGTERLPNTCNFSIRGPLLRG-----EAWPLLVSVSSAHLCHGA 97855 Query 400 HGDQPSPVL-----LSYG-----VPFDVARNALRLSVGRSTTRA 433 G P+ V + +G VP A L +G + T+A Sbjct 97856 XGLAPAGVCEQRTPVPWGSPVLEVPLLGHSAAWPLCLGSTHTKA 97987 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/38 (76%), Positives = 33/38 (87%), Gaps = 0/38 (0%) Frame = +1 Query 76 GRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNL 113 GRKA+ +I AARE+LAKMIGG+PQDIIFTSGGTE L Sbjct 80089 GRKARGLIQAARENLAKMIGGEPQDIIFTSGGTEVKFL 80202 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/26 (88%), Positives = 25/26 (96%), Gaps = 0/26 (0%) Frame = +2 Query 378 GHVVLAQCRVLMASVGAACHSDHGDQ 403 GH+VLAQCR L+ASVGAACHSDHGDQ Sbjct 99176 GHLVLAQCRTLLASVGAACHSDHGDQ 99253 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/28 (79%), Positives = 26/28 (93%), Gaps = 0/28 (0%) Frame = +3 Query 315 KAAELVTQNCEAYEAHMRDVRDYLEERL 342 +AAELV +NCEAYEAHMR +R+YLEERL Sbjct 97239 QAAELVMENCEAYEAHMRGIRNYLEERL 97322 > JSZB01000242.1 Manis javanica isolate MP_PG03-UM SCAFFOLD269, whole genome shotgun sequence Length=235636 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 28/37 (76%), Gaps = 0/37 (0%) Frame = +2 Query 236 ILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR 272 + HTDAAQA+GK +DV D+ +D ++I GHK YGP+ Sbjct 157130 VYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPK 157240 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/67 (36%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3 Query 261 LTIVGHKFYGPRIGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELV 320 ++ +K +GA+YIR + + GGGQER R GT TP++ GLG A E+ Sbjct 159315 FSLFSNKLCFSGVGAIYIRRRPRVR-VEALQSGGGQERGMRSGTVPTPLVVGLGAACEVA 159491 Query 321 TQNCEAY 327 Q E + Sbjct 159492 QQEMEVW 159512 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 15/29 (52%), Positives = 22/29 (76%), Gaps = 0/29 (0%) Frame = +2 Query 88 ESLAKMIGGKPQDIIFTSGGTESNNLVIH 116 + +A +IG P++I+FTSG TESNN+ I Sbjct 144359 QQVASLIGADPREIVFTSGATESNNIAIK 144445 > JSZB01017980.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22055, whole genome shotgun sequence Length=187698 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 24/67 (36%), Positives = 33/67 (49%), Gaps = 4/67 (6%) Frame = +2 Query 360 TQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSY--GVPFDV 417 TQR+PN + +RGP HV L + L V A + H + P+ LLS+ P Sbjct 115451 TQRIPNKLPWRVRGP--PSHVSLVRIGYLHRDVTGAPKNQHSENPTEYLLSHPSCTPRT* 115624 Query 418 ARNALRL 424 R+AL L Sbjct 115625 TRDALLL 115645 Lambda K H a alpha 0.317 0.133 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 267423058243 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40