Command line: [exonerate -m p2g --showtargetgff -q SBP2.fa -t SBP2.subseq] Hostname: [ws101069u] C4 Alignment: ------------ Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human Target: JSZB01003442.1:subseq(560000,147359) Manis javanica isolate MP_PG03-UM SCAFFOLD3870, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1911 Query range: 330 -> 854 Target range: 90362 -> 54931 331 : SerAlaAspProLysAsnValSerIleProSerSerGluAlaLeuSerSerAspProSer : 350 ||| !!! !|||||||||||||||||| !!|||||||||!.!|||||| !!||||||||| SerProValProLysAsnValSerIleSerSerSerGluValLeuSerProAspProSer 90362 : TCACCTGTCCCTAAAAATGTGAGTATATCATCTTCTGAAGTTCTGTCTCCTGATCCTTCC : 90305 351 : TyrAsnLysGluLysHisIleIleHisProThrGlnLys >>>> Target Intron : 364 ! !!..:!!:!! |||||| !!||| !:!! 3149 bp CysArgGluLysPro------IleHisSerThrThrGln++ 90304 : TGCAGAGAGAAACCC------ATCCATTCTACTACACAGgt................... : 90267 365 : 1 >>>> SerLysAlaSerGlnGlySerAspLeuGluGlnAsnGluAlaSerArgLysA : 381 |||!:!!.!|||||||||.!.||| :::|||||||||||||||||||||| ++SerArgValSerGlnGlyGlyAspHisGlnGlnAsnGluAlaSerArgLysA 90266 : ......agTCCAGAGTATCACAAGGTGGagaccatcagcaaaatgaagcctcaagaaaga : 87069 382 : snLysLysLysLysGluLysSerThrSerLysTyrGluValLeuThrValGlnGluProP : 401 ||||||||||||||||||||||| !|||||||||||||||||||||||||||||||||| snLysLysLysLysGluLysSerLysSerLysTyrGluValLeuThrValGlnGluProP 87068 : ataagaaaaagaaagaaaagtctaaGTCGAAATATGAAGTCCTGACAGTTCAGGAGCCTC : 87009 402 : roArgIleGlu >>>> Target Intron 2 >>>> AspAlaGluGluPheProAs : 411 ||||||||||| 1209 bp |||||||||||||||||||| roArgIleGlu++ ++AspAlaGluGluPheProAs 87008 : CAAGGATTgaagt.........................agGATGCCGAGGAATTTCCCAA : 85770 412 : nLeuAlaValAlaSerGluArgArgAspArgIleGluThrProLysPheGlnSerLysGl : 431 |||||||||||||||||||||||||||||||:!!|||:!!|||||||||||||||||||| nLeuAlaValAlaSerGluArgArgAspArgValGluSerProLysPheGlnSerLysGl 85769 : TCTGGCAGTTGCATCTGAAAGAAGAGACAGAGTAGAGTCTCCGAAATTTCAGTCTAAACA : 85710 432 : nGlnProGln >>>> Target Intron 3 >>>> AspAsnPheLysAsnAsnVal : 441 |||||||||| 1226 bp :!!|||||||||!:!!:!! ! nGlnProGln++ ++AsnAsnPheLysSerSerGly 85709 : GCAGCCGCAGgt.........................agAATAATTTTAAGAGTAGTGGA : 84454 442 : LysLysSerGlnLeuProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLys : 461 |||||||||!:!:!!||||||||||||||||||||||||||||||||||||||||||||| LysLysSerArgValProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLys 84453 : AAGAAGAGTCGAGTTCCAGTGCAGTTGGATTTGGGGGGCATGCTGACAGCACTGGAAAAG : 84394 462 : LysGlnHisSerGlnHisAlaLysGlnSerSerLysProValValValSer{V} >>>> : 479 |||||||||||||||:!!|||||||||||||||!:!||||||||| !!|||{|} LysGlnHisSerGlnAsnAlaLysGlnSerSerArgProValValPheSer{V}++ 84393 : AAGCAGCACTCCCAGAATGCAAAGCAGTCCTCCAGACCAGTGGTGTTCTCA{G}gt.... : 84337 480 : Target Intron 4 >>>> {al}GlyAlaValProValLeuSerLysGluCysAla : 490 19615 bp {||}||||||||||||||||||||||||!!: !!!.! ++{al}GlyAlaValProValLeuSerLysAspSerVal 84336 : .....................ag{TG}GGCGCGGTGCCAGTCCTCTCCAAAGACAGTGTG : 64692 491 : SerGlyGluArgGlyArgArgMetSerGlnMetLysThrProHisAsnProLeuAspSer : 510 :!!|||..!!:!|||!.!|||!!:||||||:!!||||||||||||||||||||||||||| AlaGlyArgLysGlyHisArgIleSerGlnValLysThrProHisAsnProLeuAspSer 64691 : GCGGGGAGGAAGGGCCACCGCATCAGCCAGGTGAAGACTCCACACAACCCCTTGGACTCC : 64632 511 : SerAlaProLeuMetLysLysGlyLysGlnArgGluIleProLysAlaLysLysProThr : 530 ||||||||||||:!!|||||||||||||||||||||:!!||||||||||||||||||||| SerAlaProLeuValLysLysGlyLysGlnArgGluValProLysAlaLysLysProThr 64631 : AGCGCCCCCCTGGTGAAGAAGGGGAAGCAGCGGGAGGTTCCCAAGGCCAAGAAGCCGACC : 64572 531 : SerLeuLysLys >>>> Target Intron 5 >>>> IleIleLeuLysGluArgG : 541 |||||||||||| 642 bp ||||||||||||||||||| SerLeuLysLys++ ++IleIleLeuLysGluArgG 64571 : TCGCTGAAGAAGgt.........................agattattttgaaagaaCGGC : 63897 542 : lnGluArgLys<->GlnArgLeuGlnGluAsnAlaValSerProAlaPheThrSerAspA : 560 ||||||||||| ||||||||||||||||||||||||||||||||||||.!!||||||| lnGluArgLysGlnGlnArgLeuGlnGluAsnAlaValSerProAlaPheAlaSerAspA 63896 : AGGAGAGAAAGCAGCAGCGTCTCCAGGAAAACGCCGTAAGCCCAGCTTTTGCCAGTGACG : 63837 561 : spThrGlnAspGlyGluSerGlyGlyAspAspGlnPheProGluGlnAlaGluLeuSer{ : 580 ||.!!|||||| !||||||||||||||||||||| ! !|||||||||!!:! !|||{ spAlaGlnAspIleGluSerGlyGlyAspAspGlnAlaLeuGluGlnAlaAspProSer{ 63836 : ATGCTCAAGATATAGAGAGCGGTGGTGATGACCAGGCACTCGAGCAGGCTGACCCCTCA{ : 63777 581 : G} >>>> Target Intron 6 >>>> {ly}ProGluGlyMetAspGluLeuIleS : 589 !} 1202 bp {.!}|||! !! !|||!!:|||! !:!:| A}++ -+{la}ProGlyValMetGluGluArgValS 63776 : G}gt.........................tg{CT}CCAGGGGTGATGGAAGAGCGGGTGT : 62548 590 : er<->ThrProSerValGluAspLysSerGluGluProProGlyThrGluLeuGlnArgA : 608 || |||! ! !||||||..!! !||||||||||||! !|||.!!|||||||||!:!! erProThrLeuValValGluSerMetSerGluGluProLeuGlyAlaGluLeuGlnLysV 62547 : CCCCCACTCTGGTGGTGGAGAGCATGTCTGAAGAGCCACTGGGAGCTGAGCTCCAGAAGG : 62488 609 : spThrGluAlaSerHisLeuAlaProAsnHisThrThrPheProLysIleHisSerArgA : 628 ..!|||.!!!!!||| !!.!|||:!! !.!!!:!! !||||||||||||||||||| alValGluThrCysHisGluValProAspGlyAlaSerCysProLysIleHisSerArgA 62487 : TGGTAGAGACCTGCCACGAGGTCCCTGATGGTGCCAGCTGCCCCAAGATCCACAGCCGGA : 62428 629 : rgPheArg{As} >>>> Target Intron 7 >>>> {p}TyrCysSerGlnMetL : 637 ||||||||{||} 625 bp {|}|||||||||||||||| rgPheArg{As}++ ++{p}TyrCysSerGlnMetL 62427 : GATTCAGG{GA}gt.........................ag{T}TACTGCAGCCAAATGC : 61776 638 : euSerLysGluValAspAlaCysValThrAspLeuLeuLysGluLeuValArgPheGlnA : 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euSerLysGluValAspAlaCysValThrAspLeuLeuLysGluLeuValArgPheGlnA 61775 : TCAGCAAGGAAGTGGATGCCTGTGTTACTGATCTGCTGAAGGAGCTGGTGCGTTTCCAGG : 61716 658 : spArgMetTyrGlnLysAspProValLysAlaLysThrLysArgArgLeuValLeuGlyL : 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| spArgMetTyrGlnLysAspProValLysAlaLysThrLysArgArgLeuValLeuGlyL 61715 : ACCGAATGTACCAGAAGGATCCGGTCAAGGCCAAGACCAAGCGCCGGCTAGTTCTGGGGC : 61656 678 : euArgGluValLeuLysHisLeuLysLeuLysLysLeuLysCysValIleIleSerProA : 697 |||||||||||||||||||||||||||||::!!:!||||||||||||||||||||||||| euArgGluValLeuLysHisLeuLysLeuArgArgLeuLysCysValIleIleSerProA 61655 : TGCGGGAAGTCCTCAAACATCTGAAGCTCCGGAGGCTGAAGTGCGTCATCATCTCTCCCA : 61596 698 : snCysGluLysIleGlnSerLys{G} >>>> Target Intron 8 >>>> {ly}G : 706 |||||||||||||||||||||||{|} 5579 bp {||}| snCysGluLysIleGlnSerLys{G}++ ++{ly}G 61595 : ACTGTGAGAAGATCCAGTCCAAA{G}gt.........................ag{GT}G : 55990 707 : lyLeuAspAspThrLeuHisThrIleIleAspTyrAlaCysGluGlnAsnIleProPheV : 726 ||||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||| lyLeuAspAspThrLeuHisThrIleIleAspHisAlaCysGluGlnAsnIleProPheV 55989 : GCCTGGATGACACCTTGCACACCATCATCGATCACGCCTGTGAGCAGAACATTCCCTTTG : 55930 727 : alPheAlaLeuAsnArgLysAlaLeuGlyArgSerLeuAsnLysAlaValProValSerV : 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alPheAlaLeuAsnArgLysAlaLeuGlyArgSerLeuAsnLysAlaValProValSerV 55929 : TATTTGCTCTCAACCGCAAAGCCCTGGGGCGCAGTTTGAACAAGGCTGTTCCTGTCAGTG : 55870 747 : alValGlyIlePheSerTyrAspGlyAlaGln >>>> Target Intron 9 >>>> : 757 |||||||||||||||||||||||||||||||| 291 bp alValGlyIlePheSerTyrAspGlyAlaGln++ + 55869 : TGGTGGGGATCTTCAGTTATGACGGGGCCCAGgt.........................a : 55548 758 : AspGlnPheHisLysMetValGluLeuThrValAlaAlaArgGlnAlaTyrLysThrMe : 776 ||||||||||||!:!|||||||||||||||!.!!.!||||||||||||||||||||||| +AspGlnPheHisArgMetValGluLeuThrAlaValAlaArgGlnAlaTyrLysThrMe 55547 : gGACCAGTTCCACAGGATGGTCGAGCTGACAGCCGTGGCCCGGCAGGCATACAAGACCAT : 55489 777 : tLeuGluAsnValGlnGlnGluLeuValGlyGluProArgProGlnAlaProProSerLe : 796 |||||||!:!|||!!.|||||||||!.!||||||||| !!|||! !!.!||| !!|||! tLeuGluSerValHisGlnGluLeuAlaGlyGluProGlyProLeuValProAlaSerPr 55488 : GCTGGAAAGTGTGCACCAGGAGCTGGCGGGGGAGCCTGGGCCCCTGGTACCTGCCAGCCC : 55429 797 : uProThrGlnGlyProSerCysProAlaGluAspGlyProProAlaLeuLysGluLysGl : 816 !! !.!!|||! !|||.!!||||||!.!|||! !|||||| !!|||! ! ! ! !|| oLeuAlaGlnAspProGlyCysProValGluGlyGlyProSerAlaProAlaGlyAlaGl 55428 : ACTTGCACAGGACCCTGGCTGCCCTGTGGAAGGCGGCCCCTCGGCTCCAGCTGGAGCAGA : 55369 817 : uGluProHisTyr{I} >>>> Target Intron 10 >>>> {le}GluIleTrpL : 825 |:!!|||! !:!!{|} 321 bp {||}!!:|||||| uLysProProHis{I}++ ++{le}AspIleTrpG 55368 : AAAGCCTCCCCAC{A}gt..........................ag{TT}GATATCTGGG : 55021 826 : ysLysHisLeuGluAlaTyrSerGlyCysThrLeuGluLeuGluGluSerLeuGluAlaS : 845 !|||! !||||||||||||||| !|||..!||||||||||||!!:||||||! !|||| lyLysProLeuGluAlaTyrSerGlnCysValLeuGluLeuGluAspSerLeuAlaAlaS 55020 : GGAAACCTCTGGAAGCTTACAGTCAGTGTGTCCTGGAGCTGGAAGACTCGCTGGCGGCGT : 54961 846 : erThrSerGlnMetMetAsnLeuAsnLeu : 854 ||||||||||||||||||||||||||||| erThrSerGlnMetMetAsnLeuAsnLeu 54960 : CAACCTCTCAGATGATGAACCTGAATTTA : 54932 vulgar: SPP00000054_2.0 330 854 . JSZB01003442.1:subseq(560000,147359) 90362 54931 - 1911 M 25 75 G 2 0 M 6 18 5 0 2 I 0 3145 3 0 2 M 41 123 5 0 2 I 0 1205 3 0 2 M 30 90 5 0 2 I 0 1222 3 0 2 M 44 132 S 0 1 5 0 2 I 0 19611 3 0 2 S 1 2 M 55 165 5 0 2 I 0 638 3 0 2 M 10 30 G 0 3 M 35 105 S 0 1 5 0 2 I 0 1198 3 0 2 S 1 2 M 9 27 G 0 3 M 41 123 S 0 2 5 0 2 I 0 621 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 5575 3 0 2 S 1 2 M 51 153 5 0 2 I 0 287 3 0 2 M 64 192 S 0 1 5 0 2 I 0 317 3 0 2 S 1 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local gene 54932 90362 1911 - . gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation + JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 90270 90362 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 90270 90362 . - . insertions 0 ; deletions 2 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 90268 90269 . - . intron_id 1 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 87121 90269 . - . intron_id 1 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 87121 87122 . - . intron_id 0 ; splice_site "ag" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 86998 87120 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 86998 87120 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 86996 86997 . - . intron_id 2 ; splice_site "gt" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 85789 86997 . - . intron_id 2 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 85789 85790 . - . intron_id 1 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 85699 85788 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 85699 85788 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 85697 85698 . - . intron_id 3 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 84473 85698 . - . intron_id 3 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 84473 84474 . - . intron_id 2 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 84340 84472 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 84340 84472 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 84338 84339 . - . intron_id 4 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 64725 84339 . - . intron_id 4 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 64725 64726 . - . intron_id 3 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 64558 64724 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 64558 64724 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 64556 64557 . - . intron_id 5 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 63916 64557 . - . intron_id 5 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 63916 63917 . - . intron_id 4 ; splice_site "ag" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 63777 63915 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 63777 63915 . - . insertions 3 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 63775 63776 . - . intron_id 6 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 62575 63776 . - . intron_id 6 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 62575 62576 . - . intron_id 5 ; splice_site "TG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 62418 62574 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 62418 62574 . - . insertions 3 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 62416 62417 . - . intron_id 7 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 61793 62417 . - . intron_id 7 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 61793 61794 . - . intron_id 6 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 61572 61792 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 61572 61792 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 61570 61571 . - . intron_id 8 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 55993 61571 . - . intron_id 8 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 55993 55994 . - . intron_id 7 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 55838 55992 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 55838 55992 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 55836 55837 . - . intron_id 9 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 55547 55837 . - . intron_id 9 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 55547 55548 . - . intron_id 8 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 55354 55546 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 55354 55546 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 55352 55353 . - . intron_id 10 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 55033 55353 . - . intron_id 10 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 55033 55034 . - . intron_id 9 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 54932 55032 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 54932 55032 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local similarity 54932 90362 1911 - . alignment_id 1 ; Query SPP00000054_2.0 ; Align 90363 331 75 ; Align 90288 358 18 ; Align 87121 364 123 ; Align 85789 405 90 ; Align 84473 435 132 ; Align 64723 480 165 ; Align 63916 535 30 ; Align 63883 545 105 ; Align 62573 581 27 ; Align 62543 590 123 ; Align 61792 632 219 ; Align 55991 706 153 ; Align 55547 757 192 ; Align 55031 822 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human Target: JSZB01003442.1:subseq(560000,147359) Manis javanica isolate MP_PG03-UM SCAFFOLD3870, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 884 Query range: 5 -> 320 Target range: 103197 -> 90338 6 : ProArgGluProGluSerGlu{G} >>>> Target Intron 1 >>>> {ly}I : 14 ||||||:!!||||||:!!|||{|} 783 bp {||}| ProArgGlnProGluAlaGlu{G}+- -+{ly}I 103197 : CCGCGGCAGCCGGAGGCGGAA{G}gg.........................gg{GC}A : 102390 15 : leLysLeuSerAlaAspValLysProPheValProArgPheAlaGlyLeuAsnValAl : 33 |||||||||||||||||||||||||||||||||||!:!||||||||||||!:!||||| leLysLeuSerAlaAspValLysProPheValProLysPheAlaGlyLeuSerValAl 102389 : TCAAGTTGTCAGCAGATGTCAAACCGTTTGTCCCCAAATTTGCTGGGCTCAGTGTGGC : 102333 34 : aTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaThrTyrTyrPro : 52 ||||! !||||||||||||||| !!|||!!.||||||!!!|||||| !||||||||| aTrpSerGluSerSerGluAlaArgValLeuProSerCysAlaAlaArgTyrTyrPro 102332 : ATGGTCAGAGTCTTCAGAAGCACGCGTGTTGCCTAGCTGTGCAGCCCGGTACTATCCG : 102276 53 : PheValGlnGluProProValThr{Gl} >>>> Target Intron 2 >>>> { : 61 ! !|||||||||! !||||||.!!{||} 6037 bp { CysValGlnGluLeuProValAla{Gl}++ ++{ 102275 : TGTGTTCAGGAACTACCAGTGGCT{GA}gt.........................ag{ : 96210 62 : u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPheProProGlnTy : 80 |}|||!..:!!||||||||||||! !|||||||||!.!||| !!|||||||||||||| u}GlnSerLeuTyrThrGluAspThrAlaPheGlyValSerProPheProProGlnTy 96209 : G}CAGAGCCTTTATACTGAAGACACGGCTTTTGGAGTATCACCTTTTCCACCTCAGTA : 96155 81 : rLeuSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSer : 99 |||||||||||||! !.!!|||||||||||| !|||||||||||||||||||||||| rLeuSerSerGluThrAlaLeuHisProTyrIleTyrSerProTyrThrLeuAspSer 96154 : TTTATCTTCTGAGACTGCACTTCATCCATATATCTACTCTCCTTACACACTGGACTCT : 96098 100 : ThrGlnAsnValTyrSerValProGlySerGlnTyrLeuTyrAsnGlnProSerCysT : 119 |||!:!||||||! ! !!|||! !|||||||||! ! !|||!:!||||||:!!|||| ThrArgAsnValSerProValArgGlySerGlnCysAspTyrSerGlnProAlaCysT 96097 : ACACGGAACGTGTCCCCAGTACGTGGCTCCCAGTGTGATTACAGCCAGCCCGCTTGTT : 96038 120 : yrArgGlyPheGlnThrValLys<-><->HisArgAsnGluAsnThrCysProLeuPr : 136 |||||||||||! !||||||||| !|||||||||:!!|||||||||||||| yrArgGlyPheProThrValLysLysGlyPheArgAsnGluHisThrCysProLeuPr 96037 : ACCGAGGTTTTCCAACAGTGAAGAAAGGCTTCCGAAATGAGCACACGTGCCCTCTCCC : 95981 137 : oGlnGluMetLysAlaLeuPheLysLysLys{T} >>>> Target Intron 3 > : 147 ||||.!.|||::!||||||.!! ||| !{|} 213 bp oGlnAsnMetArgAlaLeuLeu---LysVal{T}++ 95980 : GCAAAACATGCGGGCTCTGCTT---AAGGTG{A}gt...................... : 95948 148 : >>> {hr}TyrAspGluLysLysThrTyrAspGlnGlnLysPheAspSerGluArgA : 164 {||}!:! :!!|||||||||||||||:!!|||||||||||||||:!!!:!! +-{hr}PheLeuGlnLysLysThrTyrAspGluGlnLysPheAspSerLysLysV 95947 : ...at{CA}TTCCTGCAGAAGAAAACATATGATGAGCAAAAGTTTGACAGTAAGAAGG : 95687 165 : laAspGlyThrIleSerSerGluIleLysSerAlaArgGlySerHisHisLeuSerIl : 183 .! !!||| !!:!::!!|||!!:! !!!.:!!|||!:!.!!|||||||||:!!||||| alHisGlyProValAlaSerAspThrAsnAlaAlaLysSerSerHisHisValSerIl 95686 : TTCATGGGCCTGTGGCGTCTGATACAAACGCAGCTAAAAGTTCACATCATGTGTCTAT : 95630 184 : eTyrAlaGluAsnSerLeuLysSer{A} >>>> Target Intron 4 >>>> { : 192 |:!!|||!!: !||||||||||||{|} 1196 bp { eHisAlaAspAlaSerLeuLysSer{A}++ ++{ 95629 : TCATGCTGATGCTAGTTTGAAATCA{G}gt.........................ag{ : 94406 193 : sp}GlyTyrHisLysArgThrAspArgLysSerArgIleIleAlaLysAsnValSerT : 211 ||}..!|||||||||||||||:!!|||||||||||||||! !! !|||!:!! !|||: sp}AsnTyrHisLysArgThrAsnArgLysSerArgIleThrGluLysSerGlySerS 94405 : AT}AATTATCATAAACGAACAAACAGGAAATCCAGAATCACTGAAAAAAGTGGATCTT : 94350 212 : hrSerLysProGluPheGluPheThrThrLeuAspPheProGluLeuGlnGlyAlaGl : 230 !!||||||||||||!:!|||||||||! !|||||||||||||||||||||||| !!|| erSerLysProGluTyrGluPheThrArgLeuAspPheProGluLeuGlnGlyProGl 94349 : CCTCCAAACCCGAGTATGAATTTACCAGATTGGATTTTCCTGAACTACAGGGTCCAGA : 94293 231 : uAsnAsn<->MetSerGluIleGlnLysGlnProLysTrpGlyProValHisSerVal : 248 |!:!||| :!:||||||! !||||||||||||:!!|||||||||:!!!.!|||!.! uSerAsnAlaLeuSerGluThrGlnLysGlnProGlnTrpGlyProLeuArgSerAla 94292 : AAGCAATGCGCTATCAGAGACCCAAAAGCAGCCGCAGTGGGGGCCTTTGCGTTCCGCC : 94236 249 : SerThrAspIleSerLeuLeuArgGluValValLysProAlaAlaValLeuSerLys : 268 ||| ||||||||||||||||||||| !!.!||||||.!!|||:!!||| !!:!! Ser---AspIleSerLeuLeuArgGluSerAlaLysProThrAlaLeuLeuProGlu+ 94235 : TCT---GACATTTCTCTTCTAAGAGAATCTGCGAAACCCACTGCGTTGTTACCAGAGg : 94179 269 : >>>> Target Intron 5 >>>> GlyGluIleValValLysAsnAsnProAsn : 277 3682 bp ! ! ! !||| !!!. ! ! !!.! + +-ValMetHisValTrpAsnPhe***GlyThr 94178 : t.........................atGTAATGCATGTTTGGAATTTCTAAGGAACT : 90470 278 : GluSerValThrAlaAsnAlaAlaThrAsnSerProSerCysThrArgGluLeuSerT : 297 ...! !:!! ! !!.. ! !!.!|||! ! !!!! ! ! !|||||||||| SerPheLeuLeuTrpArgPhePheAsnAsnPheGlyCysLeu***AlaGluLeuSerT 90469 : TCTTTTTTACTTTGGAGATTCTTCAACAATTTTGGTTGTCTTTGAGCAGAGTTATCTT : 90410 298 : rpThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerAlaAlaPr : 316 |||||||||||||||||||||||||||||||||||||||||||||||||| !!!.!|| rpThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerProValPr 90409 : GGACACCAATGGGTTATGTTGTTCGGCAGACATTATCTACAGAACTGTCACCTGTCCC : 90353 317 : oLysAsnValThr : 320 ||||||||||!:! oLysAsnValSer 90352 : TAAAAATGTGAGT : 90339 vulgar: SPP00000054_2.0 5 320 . JSZB01003442.1:subseq(560000,147359) 103197 90338 - 884 M 7 21 S 0 1 5 0 2 I 0 779 3 0 2 S 1 2 M 47 141 S 0 2 5 0 2 I 0 6033 3 0 2 S 1 1 M 65 195 G 0 6 M 17 51 G 1 0 M 2 6 S 0 1 5 0 2 I 0 209 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 1192 3 0 2 S 1 2 M 40 120 G 0 3 M 17 51 G 1 0 M 17 51 5 0 2 I 0 3678 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local gene 90339 103197 884 - . gene_id 2 ; sequence SPP00000054_2.0 ; gene_orientation + JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 103176 103197 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 103176 103197 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 103174 103175 . - . intron_id 1 ; splice_site "GG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 102393 103175 . - . intron_id 1 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 102393 102394 . - . intron_id 0 ; splice_site "GG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 102248 102392 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 102248 102392 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 102246 102247 . - . intron_id 2 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 96211 102247 . - . intron_id 2 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 96211 96212 . - . intron_id 1 ; splice_site "AG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 95951 96210 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 95951 96210 . - . insertions 6 ; deletions 1 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 95949 95950 . - . intron_id 3 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 95738 95950 . - . intron_id 3 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 95738 95739 . - . intron_id 2 ; splice_site "AT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 95603 95737 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 95603 95737 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 95601 95602 . - . intron_id 4 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 94407 95602 . - . intron_id 4 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 94407 94408 . - . intron_id 3 ; splice_site "aG" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 94180 94406 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 94180 94406 . - . insertions 3 ; deletions 1 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice5 94178 94179 . - . intron_id 5 ; splice_site "GT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local intron 90498 94179 . - . intron_id 5 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local splice3 90498 90499 . - . intron_id 4 ; splice_site "AT" JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local cds 90339 90497 . - . JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local exon 90339 90497 . - . insertions 0 ; deletions 0 JSZB01003442.1:subseq(560000,147359) exonerate:protein2genome:local similarity 90339 103197 884 - . alignment_id 2 ; Query SPP00000054_2.0 ; Align 103198 6 21 ; Align 102391 14 141 ; Align 96210 62 195 ; Align 96009 127 51 ; Align 95958 145 6 ; Align 95736 148 132 ; Align 94405 193 120 ; Align 94282 233 51 ; Align 94231 251 51 ; Align 90498 268 159 # --- END OF GFF DUMP --- # -- completed exonerate analysis