TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human Length=854 Score E Sequences producing significant alignments: (Bits) Value JSZB01003442.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3870, ... 133 2e-29 JSZB01010016.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11742,... 108 8e-22 JSZB01021423.1 Manis javanica isolate MP_PG03-UM SCAFFOLD26844,... 38.5 1.9 > JSZB01003442.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3870, whole genome shotgun sequence Length=707359 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/74 (97%), Positives = 74/74 (100%), Gaps = 0/74 (0%) Frame = -3 Query 632 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVlkhlklkklkC 691 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKL++LKC Sbjct 621791 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRRLKC 621612 Query 692 VIISPNCEKIQSKG 705 VIISPNCEKIQSKG Sbjct 621611 VIISPNCEKIQSKG 621570 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 60/85 (71%), Positives = 66/85 (78%), Gaps = 2/85 (2%) Frame = -1 Query 61 EQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQPSCYR 120 Q +YTED AFG S FPPQYLSSE LHPY YSPYTLDST+NV V GSQ Y+QP+CYR Sbjct 656212 RQSLYTEDTAFGVSPFPPQYLSSETALHPYIYSPYTLDSTRNVSPVRGSQCDYSQPACYR 656033 Query 121 GFQTVK--HRNENTCPLPQEMKALF 143 GF TVK RNE+TCPLPQ M+AL Sbjct 656032 GFPTVKKGFRNEHTCPLPQNMRALL 655958 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/52 (98%), Positives = 52/52 (100%), Gaps = 0/52 (0%) Frame = -2 Query 705 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756 GGLDDTLHTIID+ACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ Sbjct 615993 GGLDDTLHTIIDHACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 615838 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/92 (62%), Positives = 71/92 (77%), Gaps = 4/92 (4%) Frame = -3 Query 177 GSHHLSIY--AENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENN-M 233 GS ++ I+ A N + +D YHKRT+RKSRI K+ S+SKPE+EFT LDFPELQG E+N + Sbjct 654458 GSSNI*IFTPAFNFVNTDNYHKRTNRKSRITEKSGSSSKPEYEFTRLDFPELQGPESNAL 654279 Query 234 SEIQKQPKWGPVHSVSTDISLLREVVKPAAVL 265 SE QKQP+WGP+ S S DISLLRE KP A+L Sbjct 654278 SETQKQPQWGPLRSAS-DISLLRESAKPTALL 654186 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/69 (59%), Positives = 46/69 (67%), Gaps = 0/69 (0%) Frame = -2 Query 756 QDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEK 815 +DQFH+MVELT ARQAYKTMLE+V QEL GEP P P S Q P CP E GP A Sbjct 615549 KDQFHRMVELTAVARQAYKTMLESVHQELAGEPGPLVPASPLAQDPGCPVEGGPSAPAGA 615370 Query 816 EEPHYIEIW 824 E+P + E W Sbjct 615369 EKPPHSECW 615343 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/48 (75%), Positives = 44/48 (92%), Gaps = 0/48 (0%) Frame = -3 Query 488 ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI 535 + +G +G R+SQ+KTPHNPLDSSAPL+KKGKQRE+PKAKKPTSLKK+ Sbjct 624698 DSVAGRKGHRISQVKTPHNPLDSSAPLVKKGKQREVPKAKKPTSLKKV 624555 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/49 (80%), Positives = 41/49 (84%), Gaps = 0/49 (0%) Frame = -3 Query 13 GIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTE 61 GIKLSADVKPFVP+FAGL+VAW ESSEA V PS AA YYP VQE PV E Sbjct 662393 GIKLSADVKPFVPKFAGLSVAWSESSEARVLPSCAARYYPCVQELPVAE 662247 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/50 (80%), Positives = 42/50 (84%), Gaps = 1/50 (2%) Frame = -3 Query 532 LKKIILKERQERKQ-RLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSG 580 + KIILKERQERKQ RLQENAVSPAF SDD QD ESGGDDQ EQA+ SG Sbjct 623924 ILKIILKERQERKQQRLQENAVSPAFASDDAQDIESGGDDQALEQADPSG 623775 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/34 (85%), Positives = 32/34 (94%), Gaps = 0/34 (0%) Frame = -3 Query 405 DAEEFPNLAVASERRDRIETPKFQSKQQPQDNFK 438 DAEEFPNLAVASERRDR+E+PKFQSKQQPQ F+ Sbjct 645788 DAEEFPNLAVASERRDRVESPKFQSKQQPQVIFR 645687 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/36 (81%), Positives = 35/36 (97%), Gaps = 0/36 (0%) Frame = -2 Query 435 DNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHAKQ 470 +NFK++ KKS++PVQLDLGGMLTALEKKQHSQ+AKQ Sbjct 644472 NNFKSSGKKSRVPVQLDLGGMLTALEKKQHSQNAKQ 644365 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/69 (57%), Positives = 40/69 (58%), Gaps = 19/69 (28%) Frame = -1 Query 294 ELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNK 353 ELSWTPMGYVVRQTLSTELS PKNVSI SSE LS DPS + Sbjct 650419 ELSWTPMGYVVRQTLSTELSPV------------------PKNVSISSSEVLSPDPSC-R 650297 Query 354 EKHIIHPTQ 362 EK I TQ Sbjct 650296 EKPIHSTTQ 650270 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/53 (51%), Positives = 33/53 (62%), Gaps = 1/53 (2%) Frame = -2 Query 580 GPEGMDELIS-TPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRD 631 P M+E +S T VE SEEP G ELQ+ E H P+ + PKIHSRRFR+ Sbjct 622575 APGVMEERVSPTLVVESMSEEPLGAELQKVVETCHEVPDGASCPKIHSRRFRE 622417 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 29/36 (81%), Gaps = 0/36 (0%) Frame = -1 Query 156 QQKFDSERADGTISSEIKSARGSHHLSIYAENSLKS 191 +QKFDS++ G ++S+ +A+ SHH+SI+A+ SLKS Sbjct 655711 EQKFDSKKVHGPVASDTNAAKSSHHVSIHADASLKS 655604 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 35/41 (85%), Positives = 37/41 (90%), Gaps = 0/41 (0%) Frame = -3 Query 364 SKASQGSDLEQNEAsrknkkkkekstskYEVLTVQEPPRIE 404 S+ SQG D +QNEASRKNKKKKEKS SKYEVLTVQEPPRIE Sbjct 647120 SRVSQGGDHQQNEASRKNKKKKEKSKSKYEVLTVQEPPRIE 646998 > JSZB01010016.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11742, whole genome shotgun sequence Length=440106 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 56/74 (76%), Positives = 67/74 (91%), Gaps = 0/74 (0%) Frame = -2 Query 632 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVlkhlklkklkC 691 YC+Q+L KE+D CVT LL+ELV FQ+R+YQKDPV+AK +RRLV+GLREV KH+KL K+KC Sbjct 293264 YCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKC 293085 Query 692 VIISPNCEKIQSKG 705 VIISPNCEKIQSKG Sbjct 293084 VIISPNCEKIQSKG 293043 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/52 (69%), Positives = 42/52 (81%), Gaps = 0/52 (0%) Frame = -2 Query 705 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756 GGLD+ L+ +I A EQ IPFVFAL RKALGR +NK VPVSVVGIF+Y GA+ Sbjct 292085 GGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAE 291930 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 0/29 (0%) Frame = -2 Query 442 KKSQLPVQLDLGGMLTALEKKQHSQHAKQ 470 KK++ PVQLDLG ML ALEK+Q + A+Q Sbjct 310880 KKNKTPVQLDLGDMLAALEKQQQAMKARQ 310794 > JSZB01021423.1 Manis javanica isolate MP_PG03-UM SCAFFOLD26844, whole genome shotgun sequence Length=41017 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/43 (47%), Positives = 27/43 (63%), Gaps = 5/43 (12%) Frame = +2 Query 3 SEGPREPESEGIKLSADVKPFVPRFAGLNVAWLESSEACVFPS 45 EGPR P G+ L+A V+P+V AG++VAWL C+F S Sbjct 24107 GEGPRVPPGCGLYLTAFVRPWV--LAGVDVAWLLY---CIFSS 24220 Lambda K H a alpha 0.311 0.128 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 598212607062 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40