Command line: [exonerate -m p2g --showtargetgff -q SARS2.aa.fa -t SARS2_JSZB01004564.1.subseq.fa] Hostname: [ws101065u] C4 Alignment: ------------ Query: SPP00002939_2.0 # Protein # seryl-tRNA synthetase 2, mitochondrial (SARS2) # Human Target: JSZB01004564.1:subseq(16513,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD5192, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2141 Query range: 0 -> 518 Target range: 58655 -> 49316 1 : MetAlaAlaSerMetAlaArgArgLeuTrpProLeuLeuThrArgArgGlyPheArgPro : 20 ||||||||||||!!:||||||||||||||||||! !:!!.!! !!||||||.!!|||! ! MetAlaAlaSerIleAlaArgArgLeuTrpProTrpValAlaGlyArgGlyLeuArgLeu 58655 : ATGGCTGCATCCATAGCGCGGCGTTTATGGCCTTGGGTGGCTGGTCGGGGGCTCCGGCTC : 58598 21 : ArgGlyGlyCysIleSerAsnAspSerProArgArgSerPheThrThrGluLysArgAsn : 40 !!|||!.!||| ! !!:!.!.|||! !||||||||||||.!!||||||!:!!:!:!! GlyGlyAlaCysAlaHisSerGlnSerGlnArgArgSerPheAlaThrGluArgGlnAsp 58597 : GGAGGTGCCTGCGCTCACAGCCAGAGCCAAAGGAGAAGTTTCGCTACGGAAAGACAGGAC : 58538 41 : ArgAsnLeuLeuTyrGluTyrAlaArgGluGlyTyrSerAlaLeuProGlnLeuAspIle : 60 ||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||!!: ArgAsnLeuLeuTyrGluHisAlaArgGluGlyTyrSerAlaLeuProGlnLeuAspMet 58537 : CGCAACCTCCTGTACGAACACGCGCGCGAGGGCTACAGCGCGCTCCCTCAGCTGGACATG : 58478 61 : GluArgPheCysAlaCysProGluGluAlaAlaHisAlaLeuGluLeuArgLysGlyGlu : 80 |||! !.!.||||||||||||||||||||||||!.!|||||||||||||||||||||! ! GluProLeuCysAlaCysProGluGluAlaAlaArgAlaLeuGluLeuArgLysGlyAla 58477 : GAACCACTGTGCGCATGCCCGGAAGAGGCCGCGCGCGCCCTGGAGCTCCGCAAGGGGGCG : 58418 81 : LeuArgSerAlaAspLeuProAlaIle >>>> Target Intron 1 >>>> IleS : 91 |||!:! !!! !||||||||||||||| 2501 bp |||: LeuGlnProAspAspLeuProAlaIle++ ++IleA 58417 : CTGCAGCCGGACGACCTGCCCGCGATCgt.........................agATTG : 55884 92 : erThrTrpGlnGluLeuArgGlnLeuGlnGluGlnIleArgSerLeuGluGluGluLysA : 111 !!||||||||||||||||||||||||!:!||||||||||||||||||||||||||||||. laThrTrpGlnGluLeuArgGlnLeuArgGluGlnIleArgSerLeuGluGluGluLysG 55883 : CAACATGGCAGGAGCTGAGGCAGCTGCGGGAGCAGATCCggagcctggaggaggagaagg : 55824 112 : laAlaValThrGluAlaValArgAlaLeuLeuAlaAsnGlnAspSerGly{G} >>>> : 128 ..||||||.!!||||||||||||! !||||||!.!!:! ! ! !{!} lyAlaValAlaGluAlaValArgAspLeuLeuValSerGlyArgValPro{G}++ 55823 : gggccGTGGCTGAGGCAGTGCGGGACTTGCTGGTGAGTGGGAGGGTCCCA{G}gt..... : 55770 129 : Target Intron 2 >>>> {lu}ValGlnGlnAspProLysTyrGlnGlyLeuArgA : 140 1917 bp { } !...|||||||||:!!|||||| !!||||||. -+{ly}HisSerGlnAspProGlnTyrGlnArgLeuArgT 55769 : ....................tg{gc}caTTCCCAGGATCCCCAATATCAGCGTCTGCGCA : 53820 141 : laArgGlyArgGluIleArgLysGluLeuValHisLeuTyrProArgGluAlaGlnLeuG : 160 !!|||||||||||||||||||||:!!|||:!!!!.|||||||||!:!|||.!!||||||| hrArgGlyArgGluIleArgLysGlnLeuMetGlnLeuTyrProLysGluThrGlnLeuG 53819 : CACGTGGCCGGGAGATCCGGAAGCAGCTCATGCAGCTGTACCCCAAGGAGACCCAGCTCG : 53760 161 : luGluGlnPheTyrLeuGlnAlaLeuLysLeuProAsnGlnThrHisProAspVal >> : 179 |||||||||||||||||!:!||||||::!||||||||| |||||||||!!:||| luGluGlnPheTyrLeuArgAlaLeuArgLeuProAsnCysThrHisProGluVal++ 53759 : AGGAGCAGTTCTACCTGCGGGCCCTGCGGCTGCCCAACTGCACGCACCCAGAGGTGgt.. : 53701 180 : >> Target Intron 3 >>>> ProValGlyAspGluSerGlnAlaArgValLeuHi : 190 81 bp |||||||||||||||||||||||||||||||||!. ++ProValGlyAspGluSerGlnAlaArgValLeuAr 53700 : .......................agCCAGTCGGGGACGAGAGCCAGGCCCGAGTGCTCCG : 53589 191 : sMetValGlyAspLysPro{V} >>>> Target Intron 4 >>>> {al}PheSe : 199 !:!!:!!||| !!||||||{!} 434 bp {.!}||||| gValIleGlyHisLysPro{A}++ ++{la}PheSe 53588 : CGTGATCGGCCACAAGCCA{G}gt.........................ag{CT}TTCTC : 53128 200 : rPheGlnProArgGlyHisLeuGluIleGlyGluLysLeuAspIleIleArgGln{Ly} : 218 ||||||||||||||||||||||||||||!.!||||||||||||||||||||||||{||} rPheGlnProArgGlyHisLeuGluIleAlaGluLysLeuAspIleIleArgGln{Ly}+ 53127 : CTTCCAACCCCGGGGCCACCTGGAAATCGCCGAGAAACTCGACATCATCCGTCAG{AA}g : 53069 219 : >>>> Target Intron 5 >>>> {s}ArgLeuSerHisValSerGlyHisArgSe : 228 171 bp {|}||||||||||||||||||||||||||||| + ++{s}ArgLeuSerHisValSerGlyHisArgSe 53068 : t.........................ag{G}CGCCTGTCCCATGTGTCTGGCCACCGCTC : 52870 229 : rTyrTyrLeuArgGlyAlaGlyAlaLeuLeuGlnHisGlyLeuValAsnPheThrPheAs : 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||.!!|| rTyrTyrLeuArgGlyAlaGlyAlaLeuLeuGlnHisGlyLeuValAsnPheThrLeuAs 52869 : CTATTACCTGCGCGGGGCCGGGGCCCTCCTGCAACACGGCCTGGTCAACTTCACACTCAA : 52810 249 : nLysLeuLeuArgArg >>>> Target Intron 6 >>>> GlyPheThrProMet : 258 |||||||:!!!.!||| 724 bp ||||||||||||||| nLysLeuValHisArg++ ++GlyPheThrProMet 52809 : CAAGCTTGTCCACAGGgt.........................agGGCTTCACCCCCATG : 52056 259 : ThrValProAspLeuLeuArgGlyAlaValPhe >>>> Target Intron 7 >>>> : 270 ||||||||||||||||||||||||||||||||| 233 bp ThrValProAspLeuLeuArgGlyAlaValPhe++ 52055 : ACGGTGCCAGACCTTCTCCGAGGAGCTGTGTTTgt......................... : 52018 271 : GluGlyCysGlyMetThrProAsnAlaAsnProSerGlnIleTyrAsnIleAspProA : 289 ||||||||||||||||||||||||.!!||||||||||||||||||||||||||||||: ++GluGlyCysGlyMetThrProAsnThrAsnProSerGlnIleTyrAsnIleAspProS 52017 : agGAAGGCTGTGGGATGACACCCAACACCAACCCATCCCAAATTTACAACATCGACCCCT : 51730 290 : laArgPheLysAspLeuAsnLeuAlaGlyThrAlaGluValGlyLeuAla{G} >>>> : 306 !!||||||:!!|||||||||||||||||||||||||||||||||||||||{|} erArgPheGluAspLeuAsnLeuAlaGlyThrAlaGluValGlyLeuAla{G}++ 51729 : CCCGTTTTGAAGACCTCAACCTGGCAGGGACAGCAGAGGTGGGGCTTGCC{G}gt..... : 51676 307 : Target Intron 8 >>>> {ly}TyrPheMetAspHisThrValAlaPheArgAspL : 318 336 bp {||}|||||||||||||||:!!|||||||||||||||| ++{ly}TyrPheMetAspHisSerValAlaPheArgAspL 51675 : ....................ag{GC}TACTTCATGGACCACTCCGTGGCCTTCAGGGACC : 51307 319 : euProVal{Ar} >>>> Target Intron 9 >>>> {g}MetValCysSerSerT : 327 |||||:!!{||} 82 bp {|}|||||||||||||||| euProIle{Ar}++ ++{g}MetValCysSerSerT 51306 : TGCCCATC{AG}gt.........................ag{G}ATGGTCTGTTCTAGTA : 51198 328 : hrCysTyrArgAlaGluThrAsnThrGlyGlnGluProArgGlyLeuTyrArgValHisH : 347 |||||||||||.!!||||||:!!! !|||:!!|||||||||||||||||||||||||||| hrCysTyrArgThrGluThrHisLysGlyLysGluProArgGlyLeuTyrArgValHisH 51197 : CCTGCTACCGAACGGAGACACACAAGGGGAAGGAGCCGCGGGGGCTGTATCGAGTCCACC : 51138 348 : isPheThrLys >>>> Target Intron 10 >>>> ValGluMetPheGlyValT : 357 ||||||||||| 81 bp ||||||||||||||||||| isPheThrLys++ ++ValGluMetPheGlyValT 51137 : ACTTCACCAAGgt..........................agGTGGAGATGTTCGGGGTGA : 51027 358 : hrGlyPro{Gl} >>>> Target Intron 11 >>>> {y}LeuGluGlnSerSer : 365 ||||||||{||} 201 bp {|}||||||||||||||| hrGlyPro{Gl}+- -+{y}LeuGluGlnSerSer 51026 : CGGGCCCT{GG}gc..........................ng{G}CTGGAGCAGAGCTCG : 50802 366 : GlnLeuLeuGluGluPheLeuSerLeuGlnMetGluIleLeuThrGluLeuGlyLeuHis : 385 !|||||||||!!:|||||||||||||||:!!||||||||||||||||||||||||||| TrpLeuLeuGluAspPheLeuSerLeuGlnValGluIleLeuThrGluLeuGlyLeuHis 50801 : TGGCTGCTGGAGGACTTCTTATCCCTTCAGGTGGAGATCTTGACGGAGCTGGGCTTGCAC : 50742 386 : Phe{Ar} >>>> Target Intron 12 >>>> {g}ValLeuAspMetProThrGl : 394 |||{||} 736 bp {|}|||||||||||||||||||| Phe{Ar}++ ++{g}ValLeuAspMetProThrGl 50741 : TTC{AG}gt..........................ag{A}GTCCTGGACATGCCCACCCA : 49979 395 : nGluLeuGlyLeuProAlaTyrArgLysPheAspIleGluAlaTrpMetProGlyArgGl : 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| nGluLeuGlyLeuProAlaTyrArgLysPheAspIleGluAlaTrpMetProGlyArgGl 49978 : GGAACTGGGCCTTCCCGCCTACCGCAAGTTTGACATTGAGGCCTGGATGCCAGGCCGCGG : 49919 415 : yArgPheGlyGlu >>>> Target Intron 13 >>>> ValThrSerAlaSerAs : 424 | !!||||||||| 90 bp ||||||||||||||||| yCysPheGlyGlu++ ++ValThrSerAlaSerAs 49918 : CTGCTTTGGTGAAgt..........................agGTCACCAGTGCTTCCAA : 49799 425 : nCysThrAspPheGlnSerArgArgLeuHisIleMetPheGlnThrGluAlaGlyGluLe : 444 ||||||||||||||||||||||||||||||||||||||||!!.||||||||||||!!:|| nCysThrAspPheGlnSerArgArgLeuHisIleMetPheHisThrGluAlaGlyAspLe 49798 : CTGCACGGACTTCCAGAGCCGCCGGCTGCACATCATGTTCCACACAGAGGCCGGAGACTT : 49739 445 : uGlnPheAlaHisThr >>>> Target Intron 14 >>>> ValAsnAlaThrAl : 454 |||||||||||||||| 116 bp |||||||||||||| uGlnPheAlaHisThr++ ++ValAsnAlaThrAl 49738 : GCAGTTTGCACACACAgt..........................agGTGAATGCCACAGC : 49593 455 : aCysAlaValProArgLeuLeuIleAlaLeuLeuGluSerAsnGlnGlnLys >>>> T : 472 |||||||||||||||||||||||||||||||||||||||| !!||||||||| aCysAlaValProArgLeuLeuIleAlaLeuLeuGluSerTyrGlnGlnLys++ 49592 : CTGCGCTGTCCCTCGCCTCCTCATTGCCCTCCTAGAGAGCTATCAGCAAAAGgt...... : 49537 473 : arget Intron 15 >>>> AspGlySerValLeuValProProAlaLeuGlnSerTy : 484 82 bp ||||||||||||||||||||||||||||||||| || ++AspGlySerValLeuValProProAlaLeuGlnProTy 49536 : ....................agGACGGCTCAGTCCTCgtgccccctgccctccagcccta : 49421 485 : rLeuGlyThrAspArgIleThrAlaProThrHisValProLeuGlnTyrIleGlyProAs : 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rLeuGlyThrAspArgIleThrAlaProThrHisValProLeuGlnTyrIleGlyProAs 49420 : CCTCGGCACCGATCGGATCACTGCCCCCACCCACGTTCCTCTCCAGTACATCGGCCCCAA : 49361 505 : nGlnProArgLysProGlyLeuProGlyGlnProAlaValSer : 518 |||||||!:!|||||| !!! !|||||||||||||||:!!||| nGlnProGlnLysProArgProProGlyGlnProAlaLeuSer 49360 : CCAGCCCCAGAAGCCCAGGCCTCCAGGCCAGCCAGCCCTGAGC : 49317 vulgar: SPP00002939_2.0 0 518 . JSZB01004564.1:subseq(16513,100000) 58655 49316 - 2141 M 89 267 5 0 2 I 0 2497 3 0 2 M 38 114 S 0 1 5 0 2 I 0 1913 3 0 2 S 1 2 M 50 150 5 0 2 I 0 77 3 0 2 M 18 54 S 0 1 5 0 2 I 0 430 3 0 2 S 1 2 M 20 60 S 0 2 5 0 2 I 0 167 3 0 2 S 1 1 M 35 105 5 0 2 I 0 720 3 0 2 M 16 48 5 0 2 I 0 229 3 0 2 M 36 108 S 0 1 5 0 2 I 0 332 3 0 2 S 1 2 M 14 42 S 0 2 5 0 2 I 0 78 3 0 2 S 1 1 M 29 87 5 0 2 I 0 77 3 0 2 M 9 27 S 0 2 5 0 2 I 0 197 3 0 2 S 1 1 M 26 78 S 0 2 5 0 2 I 0 732 3 0 2 S 1 1 M 31 93 5 0 2 I 0 86 3 0 2 M 31 93 5 0 2 I 0 112 3 0 2 M 22 66 5 0 2 I 0 78 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-09 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local gene 49317 58655 2141 - . gene_id 1 ; sequence SPP00002939_2.0 ; gene_orientation + JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 58389 58655 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 58389 58655 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 58387 58388 . - . intron_id 1 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 55888 58388 . - . intron_id 1 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 55888 55889 . - . intron_id 0 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 55773 55887 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 55773 55887 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 55771 55772 . - . intron_id 2 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 53856 55772 . - . intron_id 2 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 53856 53857 . - . intron_id 1 ; splice_site "tg" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 53704 53855 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 53704 53855 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 53702 53703 . - . intron_id 3 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 53623 53703 . - . intron_id 3 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 53623 53624 . - . intron_id 2 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 53568 53622 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 53568 53622 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 53566 53567 . - . intron_id 4 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 53134 53567 . - . intron_id 4 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 53134 53135 . - . intron_id 3 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 53070 53133 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 53070 53133 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 53068 53069 . - . intron_id 5 ; splice_site "Gt" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 52899 53069 . - . intron_id 5 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 52899 52900 . - . intron_id 4 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 52793 52898 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 52793 52898 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 52791 52792 . - . intron_id 6 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 52069 52792 . - . intron_id 6 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 52069 52070 . - . intron_id 5 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 52021 52068 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 52021 52068 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 52019 52020 . - . intron_id 7 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 51788 52020 . - . intron_id 7 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 51788 51789 . - . intron_id 6 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 51679 51787 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 51679 51787 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 51677 51678 . - . intron_id 8 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 51343 51678 . - . intron_id 8 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 51343 51344 . - . intron_id 7 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 51297 51342 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 51297 51342 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 51295 51296 . - . intron_id 9 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 51215 51296 . - . intron_id 9 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 51215 51216 . - . intron_id 8 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 51127 51214 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 51127 51214 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 51125 51126 . - . intron_id 10 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 51046 51126 . - . intron_id 10 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 51046 51047 . - . intron_id 9 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 51017 51045 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 51017 51045 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 51015 51016 . - . intron_id 11 ; splice_site "GC" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 50816 51016 . - . intron_id 11 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 50816 50817 . - . intron_id 10 ; splice_site "NG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 50735 50815 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 50735 50815 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 50733 50734 . - . intron_id 12 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 49999 50734 . - . intron_id 12 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 49999 50000 . - . intron_id 11 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 49905 49998 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 49905 49998 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 49903 49904 . - . intron_id 13 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 49815 49904 . - . intron_id 13 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 49815 49816 . - . intron_id 12 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 49722 49814 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 49722 49814 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 49720 49721 . - . intron_id 14 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 49606 49721 . - . intron_id 14 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 49606 49607 . - . intron_id 13 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 49540 49605 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 49540 49605 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice5 49538 49539 . - . intron_id 15 ; splice_site "GT" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local intron 49458 49539 . - . intron_id 15 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local splice3 49458 49459 . - . intron_id 14 ; splice_site "AG" JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local cds 49317 49457 . - . JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local exon 49317 49457 . - . insertions 0 ; deletions 0 JSZB01004564.1:subseq(16513,100000) exonerate:protein2genome:local similarity 49317 58655 2141 - . alignment_id 1 ; Query SPP00002939_2.0 ; Align 58656 1 267 ; Align 55888 90 114 ; Align 53854 129 150 ; Align 53623 179 54 ; Align 53132 198 60 ; Align 52898 219 105 ; Align 52069 254 48 ; Align 51788 270 108 ; Align 51341 307 42 ; Align 51214 322 87 ; Align 51046 351 27 ; Align 50815 361 78 ; Align 49998 388 93 ; Align 49815 419 93 ; Align 49606 450 66 ; Align 49458 472 141 # --- END OF GFF DUMP --- # -- completed exonerate analysis