Command line: [exonerate -m p2g --showtargetgff -q RPL30.fa -t RPL30.subseq]
Hostname: [ws101069u]

C4 Alignment:
------------
         Query: SPP00002937_2.0 # Protein # ribosomal protein L30 (RPL30) # Human 
        Target: JSZB01006600.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD7573, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 313
   Query range: 27 -> 115
  Target range: 4376 -> 4114

   28 : ValLeuGlyTyrLysGlnThrLeuLysMetIleArgGlnGlyLysAlaLysLeuValIleLe :   48
        |||||||||||||||||||||||||||||||||!!!||||||||||||:!!|||||||||||
        ValLeuGlyTyrLysGlnThrLeuLysMetIleSerGlnGlyLysAlaGlnLeuValIleLe
 4376 : GTGTTGGGATACAAGCAGACTCTGAAAATGATCAGCCAAGGCAAAGCACAGCTAGTCATCCT : 4316

   49 : uAlaAsnAsnCysProAlaLeuArgLysSerGluIleGluTyrTyrAlaMetLeuAlaLysT :   69
        |.!!|||||||||||||||:!!|||||||||||||||! !:!!||||||:!!||||||||||
        uThrAsnAsnCysProAlaValArgLysSerGluIleGlyHisTyrAlaLeuLeuAlaLysT
 4315 : CACCAACAACTGCCCAGCTGTGAGGAAATCTGAAATAGGGCACTATGCCCTGTTAGCCAAAA : 4253

   70 : hrGlyValHisHisTyrSerGlyAsnAsnIleGluLeuGlyThrAlaCysGlyLysTyrTyr :   89
        ||  !  !!.!||||||||||||:!!||||||||||||! !|||||||||||||||||||||
        hrThrAsnArgHisTyrSerGlyHisAsnIleGluLeuAspThrAlaCysGlyLysTyrTyr
 4252 : CTACTAACCGTCACTACAGTGGCCATAATATTGAATTGGACACAGCATGTGGAAAATACTAC : 4193

   90 : ArgValCysThr-LeuAlaIleIleAspProGlyAspSerAspIleIleArgSerMetProG :  110
        |||! !! !:!!#:!!   |||||||||||||||||||||||||||||||||!!!|||||||
        ArgGlyPheSer#Val---IleIleAspProGlyAspSerAspIleIleArgCysMetProG
 4192 : AGAGGATTTTCCAGTT---ATCATTgatccaggtgattctgatattaTTAGATGCATGCCAG : 4132

  111 : luGlnThrGlyGluLys :  115
        |||||||||||||||||
        luGlnThrGlyGluLys
 4131 : AACAGACTGGTGAAAAG : 4115

vulgar: SPP00002937_2.0 27 115 . JSZB01006600.1:subseq(0,100000) 4376 4114 - 313 M 66 198 F 0 1 M 1 3 G 1 0 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01006600.1:subseq(0,100000)	exonerate:protein2genome:local	gene	4115	4376	313	-	.	gene_id 1 ; sequence SPP00002937_2.0 ; gene_orientation .
JSZB01006600.1:subseq(0,100000)	exonerate:protein2genome:local	cds	4115	4376	.	-	.	
JSZB01006600.1:subseq(0,100000)	exonerate:protein2genome:local	exon	4115	4376	.	-	.	insertions 0 ; deletions 1 ; frameshifts 1
JSZB01006600.1:subseq(0,100000)	exonerate:protein2genome:local	similarity	4115	4376	313	-	.	alignment_id 1 ; Query SPP00002937_2.0 ; Align 4377 28 198 ; Align 4178 94 3 ; Align 4175 96 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis