TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002937_2.0 # Protein # ribosomal protein L30 (RPL30) # Human Length=115 Score E Sequences producing significant alignments: (Bits) Value JSZB01014635.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17616,... 157 2e-42 JSZB01005001.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5694, ... 139 4e-36 JSZB01006600.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7573, ... 126 7e-36 JSZB01012354.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14662,... 134 1e-34 JSZB01005959.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6807, ... 80.9 2e-24 JSZB01035386.1 Manis javanica isolate MP_PG03-UM SCAFFOLD47617,... 67.4 4e-24 JSZB01012198.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14480,... 88.2 9e-23 JSZB01010344.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12137,... 98.2 4e-22 JSZB01003475.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3914, ... 82.0 1e-20 JSZB01022113.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27795,... 65.9 1e-18 JSZB01006250.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7145, ... 68.2 2e-14 JSZB01001357.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1495, ... 72.4 9e-14 JSZB01004304.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4881, ... 42.4 0.002 JSZB01018010.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22094,... 30.4 0.80 JSZB01009742.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11399,... 32.0 4.4 > JSZB01014635.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17616, whole genome shotgun sequence Length=48322 Score = 157 bits (396), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 74/77 (96%), Positives = 77/77 (100%), Gaps = 0/77 (0%) Frame = +3 Query 25 GKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTA 84 GKY+LGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSG+NIELGTA Sbjct 11808 GKYMLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGHNIELGTA 11987 Query 85 CGKYYRVCTLAIIDPGD 101 CGKYYRVCTLAIIDPG+ Sbjct 11988 CGKYYRVCTLAIIDPGN 12038 Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/22 (77%), Positives = 17/22 (77%), Gaps = 0/22 (0%) Frame = +2 Query 1 MVAAKKTKKSLESINSRLQLVM 22 MVA KK KKSLE INSR QL M Sbjct 11738 MVATKKMKKSLEYINSRPQLRM 11803 > JSZB01005001.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5694, whole genome shotgun sequence Length=593342 Score = 139 bits (349), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/106 (68%), Positives = 83/106 (78%), Gaps = 5/106 (5%) Frame = -2 Query 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60 MVAA+K KKSLE INSRL V+KSGKY+LGYKQTLKMIRQGK KLVILANNCP L + + Sbjct 501355 MVAAEKMKKSLEPINSRLPFVVKSGKYMLGYKQTLKMIRQGKTKLVILANNCPGL-NTML 501179 Query 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106 + ++ T V +IELGTACGKYYRVCTLA+ DPGDS I+R Sbjct 501178 RWPKPVSTTTVAI----DIELGTACGKYYRVCTLALTDPGDSGIVR 501053 > JSZB01006600.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7573, whole genome shotgun sequence Length=200258 Score = 126 bits (317), Expect(2) = 7e-36, Method: Compositional matrix adjust. Identities = 66/90 (73%), Positives = 74/90 (82%), Gaps = 6/90 (7%) Frame = -1 Query 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60 MVA K+T+KSL S+NSRL LV VLGYKQTLKMI QGKA+LVIL NNCPA+RKSEI Sbjct 4439 MVATKRTEKSLGSVNSRL*LV------VLGYKQTLKMISQGKAQLVILTNNCPAVRKSEI 4278 Query 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYR 90 +YA+LAKT HYSG+NIEL TACGKYYR Sbjct 4277 GHYALLAKTTNRHYSGHNIELDTACGKYYR 4188 Score = 45.4 bits (106), Expect(2) = 7e-36, Method: Composition-based stats. Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 0/20 (0%) Frame = -2 Query 96 IIDPGDSDIIRSMPEQTGEK 115 IIDPGDSDIIR MPEQTGEK Sbjct 4174 IIDPGDSDIIRCMPEQTGEK 4115 > JSZB01012354.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14662, whole genome shotgun sequence Length=178379 Score = 134 bits (338), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 65/87 (75%), Positives = 72/87 (83%), Gaps = 1/87 (1%) Frame = +3 Query 28 VLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGK 87 +L YKQ+LK+I QGKAK V+L N CP LRKSEIEYY MLAKTGVH YSGNNIEL C + Sbjct 122529 LLRYKQSLKLI-QGKAKQVVLDNICPLLRKSEIEYYVMLAKTGVHLYSGNNIELVMVCRQ 122705 Query 88 YYRVCTLAIIDPGDSDIIRSMPEQTGE 114 YY +CTLAIIDPGDSD +R MPEQTGE Sbjct 122706 YYDICTLAIIDPGDSDTVRCMPEQTGE 122786 > JSZB01005959.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6807, whole genome shotgun sequence Length=216257 Score = 80.9 bits (198), Expect(3) = 2e-24, Method: Compositional matrix adjust. Identities = 42/68 (62%), Positives = 55/68 (81%), Gaps = 1/68 (1%) Frame = +1 Query 2 VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIE 61 + K+ KK LESINSRLQ++MKS KY+LG+K+ + Q KAKLVILANNC ALRK+E E Sbjct 103534 IGLKEDKKLLESINSRLQVIMKSEKYMLGHKEDSEN-DQTKAKLVILANNCLALRKAETE 103710 Query 62 YYAMLAKT 69 ++A+LAK+ Sbjct 103711 HHALLAKS 103734 Score = 47.0 bits (110), Expect(3) = 2e-24, Method: Composition-based stats. Identities = 21/26 (81%), Positives = 22/26 (85%), Gaps = 0/26 (0%) Frame = +3 Query 90 RVCTLAIIDPGDSDIIRSMPEQTGEK 115 RVCTLAI DPG+SD IRSMPE T EK Sbjct 103791 RVCTLAITDPGESDTIRSMPE*TFEK 103868 Score = 26.6 bits (57), Expect(3) = 2e-24, Method: Compositional matrix adjust. Identities = 12/18 (67%), Positives = 14/18 (78%), Gaps = 0/18 (0%) Frame = +2 Query 76 GNNIELGTACGKYYRVCT 93 G++ ELGTACGKY V T Sbjct 103751 GHSTELGTACGKY*SVHT 103804 > JSZB01035386.1 Manis javanica isolate MP_PG03-UM SCAFFOLD47617, whole genome shotgun sequence Length=26144 Score = 67.4 bits (163), Expect(3) = 4e-24, Method: Compositional matrix adjust. Identities = 32/48 (67%), Positives = 37/48 (77%), Gaps = 0/48 (0%) Frame = -1 Query 8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55 KKSL+SINS LQL+M+S KYVLGY Q LK RQGK KL I N+CP + Sbjct 24347 KKSLQSINSSLQLIMQSAKYVLGYMQILKKTRQGKVKLFIPTNSCPVM 24204 Score = 49.3 bits (116), Expect(3) = 4e-24, Method: Composition-based stats. Identities = 25/34 (74%), Positives = 25/34 (74%), Gaps = 1/34 (3%) Frame = -2 Query 82 GTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115 GTACG RVCT AI DP DS I RSMPEQT EK Sbjct 24142 GTACGNT-RVCTRAITDPVDSGITRSMPEQTDEK 24044 Score = 36.6 bits (83), Expect(3) = 4e-24, Method: Compositional matrix adjust. Identities = 16/22 (73%), Positives = 17/22 (77%), Gaps = 0/22 (0%) Frame = -3 Query 61 EYYAMLAKTGVHHYSGNNIELG 82 EY AM AKTGVHHYSG+ EL Sbjct 24204 EYNAMWAKTGVHHYSGHYAELA 24139 > JSZB01012198.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14480, whole genome shotgun sequence Length=274450 Score = 88.2 bits (217), Expect(2) = 9e-23, Method: Compositional matrix adjust. Identities = 41/64 (64%), Positives = 50/64 (78%), Gaps = 0/64 (0%) Frame = +3 Query 22 MKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIEL 81 +K +VL YKQTL +IRQGK KLVIL N+CPALRKSEIEYYA+LA+TG+HH+S + I Sbjct 144294 IKICPFVLEYKQTLNIIRQGKVKLVILTNSCPALRKSEIEYYAILAQTGIHHHSDSTILN 144473 Query 82 GTAC 85 C Sbjct 144474 WAQC 144485 Score = 40.0 bits (92), Expect(2) = 9e-23, Method: Compositional matrix adjust. Identities = 19/29 (66%), Positives = 22/29 (76%), Gaps = 0/29 (0%) Frame = +2 Query 79 IELGTACGKYYRVCTLAIIDPGDSDIIRS 107 IELGT KYYR+CTLAI DP +S II + Sbjct 144467 IELGTVYRKYYRLCTLAITDPVNSGIIEA 144553 > JSZB01010344.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12137, whole genome shotgun sequence Length=304140 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 49/49 (100%), Positives = 49/49 (100%), Gaps = 0/49 (0%) Frame = -1 Query 8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR Sbjct 299496 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 299350 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 44/45 (98%), Positives = 45/45 (100%), Gaps = 0/45 (0%) Frame = -2 Query 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG 100 RKSEIEYYAMLAKTGVHHYSG+NIELGTACGKYYRVCTLAIIDPG Sbjct 298142 RKSEIEYYAMLAKTGVHHYSGHNIELGTACGKYYRVCTLAIIDPG 298008 Score = 37.4 bits (85), Expect = 0.083, Method: Composition-based stats. Identities = 16/16 (100%), Positives = 16/16 (100%), Gaps = 0/16 (0%) Frame = -1 Query 100 GDSDIIRSMPEQTGEK 115 GDSDIIRSMPEQTGEK Sbjct 297306 GDSDIIRSMPEQTGEK 297259 > JSZB01003475.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3914, whole genome shotgun sequence Length=500883 Score = 82.0 bits (201), Expect(2) = 1e-20, Method: Compositional matrix adjust. Identities = 42/66 (64%), Positives = 48/66 (73%), Gaps = 4/66 (6%) Frame = -2 Query 50 NNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109 NCPALRK EYYAMLA+ G H YS NIELG+ + RVCTLAI DPGDS I+RS+ Sbjct 37307 TNCPALRK--YEYYAMLAEKGAHPYSDRNIELGSV--ESTRVCTLAITDPGDSRIVRSLQ 37140 Query 110 EQTGEK 115 E+T EK Sbjct 37139 EKTSEK 37122 Score = 38.9 bits (89), Expect(2) = 1e-20, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 33/46 (72%), Gaps = 2/46 (4%) Frame = -3 Query 3 AAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVIL 48 A KTKK L SI+SRLQLV S KY+LG+KQT K GK KLVIL Sbjct 37438 VAAKTKKLL*SISSRLQLV-*SVKYLLGHKQTEK-*SDGKFKLVIL 37307 > JSZB01022113.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27795, whole genome shotgun sequence Length=286146 Score = 65.9 bits (159), Expect(2) = 1e-18, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 43/59 (73%), Gaps = 0/59 (0%) Frame = -2 Query 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSE 59 +V AKKT++ +E +NSRL +MKS KY+LGY+ T+ MIRQGK K+ I NN R+SE Sbjct 270743 LVVAKKTEELVEPVNSRL*FLMKSRKYMLGYR*TMNMIRQGKVKMAIFTNNSLVSRESE 270567 Score = 48.5 bits (114), Expect(2) = 1e-18, Method: Compositional matrix adjust. Identities = 21/27 (78%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Frame = -3 Query 61 EYYAMLAKTGVHHYSGNNIELGTACGK 87 EY AM+A+TGVHHYSGNN ELGT C K Sbjct 270562 EYNAMVARTGVHHYSGNNTELGTVCRK 270482 > JSZB01006250.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7145, whole genome shotgun sequence Length=201136 Score = 68.2 bits (165), Expect(2) = 2e-14, Method: Composition-based stats. Identities = 38/71 (54%), Positives = 41/71 (58%), Gaps = 0/71 (0%) Frame = +3 Query 39 RQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIID 98 R G+AKL ILA NC ALR+ EI+ YAM KTG GN ELG YYR CTL I Sbjct 197463 R*GEAKLAILAINCLALRRPEIKCYAMWVKTGAQQCGGNTAELGVVSRIYYRECTLVITG 197642 Query 99 PGDSDIIRSMP 109 GDS I P Sbjct 197643 LGDSVIFAVCP 197675 Score = 32.0 bits (71), Expect(2) = 2e-14, Method: Composition-based stats. Identities = 20/38 (53%), Positives = 25/38 (66%), Gaps = 2/38 (5%) Frame = +1 Query 5 KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGK 42 ++TKKS +SINSR KSGKYVL Y L+M + K Sbjct 197368 RRTKKSQKSINSRS*FGRKSGKYVLEYH--LEMTDEAK 197475 > JSZB01001357.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1495, whole genome shotgun sequence Length=137699 Score = 72.4 bits (176), Expect(2) = 9e-14, Method: Compositional matrix adjust. Identities = 46/103 (45%), Positives = 56/103 (54%), Gaps = 10/103 (10%) Frame = -1 Query 18 LQLVMKSGKYVLGYKQTLK-MIRQGKAKLVILANNC---PALRKSEIEYYAMLAKTGVHH 73 Q+VMKS KYVLG+KQT RQ K + C P+L++ Sbjct 40724 FQIVMKSRKYVLGHKQTQNDQTRQSKT-----GHPCQQLPSLKEIRNTVLCPAGPNWCPT 40560 Query 74 YSGNNIELGTACGK-YYRVCTLAIIDPGDSDIIRSMPEQTGEK 115 + E+ ACGK +YRVC LA+ DPGDS IIRSMPEQT EK Sbjct 40559 *QWPHTEMVIACGKKHYRVCALAVADPGDSVIIRSMPEQTSEK 40431 Score = 25.4 bits (54), Expect(2) = 9e-14, Method: Compositional matrix adjust. Identities = 13/18 (72%), Positives = 14/18 (78%), Gaps = 0/18 (0%) Frame = -3 Query 1 MVAAKKTKKSLESINSRL 18 MVA + TKKSL INSRL Sbjct 40776 MVARENTKKSLALINSRL 40723 > JSZB01004304.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4881, whole genome shotgun sequence Length=55168 Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/32 (66%), Positives = 26/32 (81%), Gaps = 2/32 (6%) Frame = -3 Query 28 VLGYKQTLKMIRQGKAKLVILANNCPALRKSE 59 VLG Q LKMIRQGKAKL++L N+CP+ KS+ Sbjct 47549 VLG--QILKMIRQGKAKLIVLTNSCPS*EKSK 47460 > JSZB01018010.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22094, whole genome shotgun sequence Length=194280 Score = 30.4 bits (67), Expect(2) = 0.80, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 19/26 (73%), Gaps = 1/26 (4%) Frame = -3 Query 35 LKMIRQGKAKLVILANNCPA-LRKSE 59 LK IRQ K L++LANN PA RKSE Sbjct 59938 LKQIRQSKG*LIMLANNHPA*KRKSE 59861 Score = 22.7 bits (47), Expect(2) = 0.80, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 0/18 (0%) Frame = -1 Query 82 GTACGKYYRVCTLAIIDP 99 G +CG Y TL +IDP Sbjct 59799 GHSCGMYS*ALTLPLIDP 59746 > JSZB01009742.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11399, whole genome shotgun sequence Length=263952 Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%) Frame = +1 Query 31 YKQTLKMIR------QGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTA 84 + LKM+ Q IL NNC +++K + E LAK G H + G+N Sbjct 41350 FNHMLKMLNLI*FFTQHVLSFFILKNNCQSVQKFDAEIVLNLAKNGTHPWFGSN------ 41511 Query 85 CGK 87 CGK Sbjct 41512 CGK 41520 Lambda K H a alpha 0.317 0.132 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21046655825 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40