TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000092_2.0 # Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Human Length=192 Score E Sequences producing significant alignments: (Bits) Value JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259... 112 3e-27 JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, ... 76.3 9e-14 JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423,... 53.9 1e-06 JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433,... 38.5 0.14 JSZB01014421.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17342,... 36.2 0.81 JSZB01066426.1 Manis javanica isolate MP_PG03-UM C40804119, who... 35.0 1.5 JSZB01012886.1 Manis javanica isolate MP_PG03-UM SCAFFOLD15357,... 29.6 3.8 JSZB01025730.1 Manis javanica isolate MP_PG03-UM SCAFFOLD33020,... 34.3 4.0 > JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259, whole genome shotgun sequence Length=1168 Score = 112 bits (280), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 49/75 (65%), Positives = 57/75 (76%), Gaps = 0/75 (0%) Frame = -1 Query 90 GTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDG 149 GTPLF+S+TKFD+G GWPS+ IN E I D S+GM R+E C CGAHLGH+F+DG Sbjct 229 GTPLFESDTKFDAGCGWPSYFKPINGEVIAEKTDRSHGMLRIEVQCKNCGAHLGHVFEDG 50 Query 150 PRPTGKRYCINSAAL 164 P PTG RYCINSAAL Sbjct 49 PAPTGLRYCINSAAL 5 > JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, whole genome shotgun sequence Length=1121306 Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 41/56 (73%), Positives = 45/56 (80%), Gaps = 1/56 (2%) Frame = -3 Query 137 QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL 192 QCGAHLGHIFDDGPRPTGKRYC+NSA+LSFTPA+S G G SG +ADK EL Sbjct 411954 QCGAHLGHIFDDGPRPTGKRYCVNSASLSFTPAESRGATGGDSGGGP-GRADKTEL 411790 Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/39 (82%), Positives = 35/39 (90%), Gaps = 1/39 (3%) Frame = -2 Query 105 GWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCG-AHL 142 GWPSFHDVINS+A+ FTDDFSYGMHRVETSCSQ +HL Sbjct 420082 GWPSFHDVINSDAVAFTDDFSYGMHRVETSCSQVS*SHL 419966 Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%) Frame = -1 Query 36 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 68 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE Sbjct 536651 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 536553 Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/54 (56%), Positives = 36/54 (67%), Gaps = 0/54 (0%) Frame = -2 Query 42 KVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFK 95 ++ F Q R+ + + + SAFEGEYTHHKDPGIYKCVVCGTPLFK Sbjct 535045 EIYFKQIHSRRNNAHFDFFLMLCLLSISAFEGEYTHHKDPGIYKCVVCGTPLFK 534884 > JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423, whole genome shotgun sequence Length=367619 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 22/32 (69%), Positives = 25/32 (78%), Gaps = 0/32 (0%) Frame = -3 Query 137 QCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168 QC AHLGH+F DGP P G+R+CINS AL F P Sbjct 180978 QCEAHLGHVFPDGPGPAGQRFCINSVALKFKP 180883 > JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433, whole genome shotgun sequence Length=5080 Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 20/33 (61%), Gaps = 0/33 (0%) Frame = +2 Query 79 KDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHD 111 + PGIY C CG LF S +K+ S WP+F + Sbjct 4982 RLPGIYACAKCGYELFSSRSKYAHSSPWPAFTE 5080 > JSZB01014421.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17342, whole genome shotgun sequence Length=191848 Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust. Identities = 17/69 (25%), Positives = 27/69 (39%), Gaps = 0/69 (0%) Frame = -1 Query 78 HKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQ 137 H +P + + ++ + K D G+ WP + I FS +V Sbjct 4591 H*EPSLERQILLARTQSATRRKQDKGTAWPKMMLTLLLRLIISDHFFSLSRLKVPRETES 4412 Query 138 CGAHLGHIF 146 CG HLGH+ Sbjct 4411 CGPHLGHLI 4385 > JSZB01066426.1 Manis javanica isolate MP_PG03-UM C40804119, whole genome shotgun sequence Length=1095 Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/38 (45%), Positives = 24/38 (63%), Gaps = 1/38 (3%) Frame = +2 Query 132 ETSCSQCGAHLGHIF-DDGPRPTGKRYCINSAALSFTP 168 + SC +CG LGH F +DGP+ R+ I S++L F P Sbjct 221 QVSCGRCGNGLGHEFLNDGPKRGQSRF*IFSSSLKFIP 334 > JSZB01012886.1 Manis javanica isolate MP_PG03-UM SCAFFOLD15357, whole genome shotgun sequence Length=71628 Score = 29.6 bits (65), Expect(2) = 3.8, Method: Compositional matrix adjust. Identities = 14/47 (30%), Positives = 23/47 (49%), Gaps = 0/47 (0%) Frame = +3 Query 70 AFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSE 116 A G + HH P +Y C++ L +S+ +F G P H+ + E Sbjct 723 ASTGAWGHHPPPSVYCCLLKSQELPRSQPEFLGTQGTPEPHEALTWE 863 Score = 22.7 bits (47), Expect(2) = 3.8, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (17%) Frame = +1 Query 127 GMHRVETSCSQC------GAHLGHIFDDGPRPTGKR 156 G H SC Q G H + DD P+P+G R Sbjct 883 GPHLDTMSCPQGS*GPDKGTHPAALPDDDPKPSGPR 990 > JSZB01025730.1 Manis javanica isolate MP_PG03-UM SCAFFOLD33020, whole genome shotgun sequence Length=107798 Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/48 (42%), Positives = 23/48 (48%), Gaps = 6/48 (13%) Frame = -3 Query 74 EYTHH---KDPGIYKCVVCGTPLFKSETKFDSGSGWP---SFHDVINS 115 EY H +DPGI C C + +KSE S WP SFH I S Sbjct 76158 EYKHWSQARDPGIRVCSTCRSRAWKSEINIHRLSSWP**RSFHPQITS 76015 Lambda K H a alpha 0.316 0.132 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57905086764 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40