Command line: [exonerate -m p2g --showtargetgff -q MSRB2.fa -t MSRB2.subseq]
Hostname: [ws101069u]

C4 Alignment:
------------
         Query: SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (MSRB2) # Human 
        Target: JSZB01014487.1:subseq(130000,120000) Manis javanica isolate MP_PG03-UM SCAFFOLD17423, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 648
   Query range: 35 -> 182
  Target range: 62373 -> 50873

    36 : LeuGlyGluAlaGlySerLeuAlaThrCysGluLeuProLeuAlaLysSerGluTrpGln :    55
         !!!..!.!..!!||||||! !.!!! !  !|||! ! !!|||.!!|||!!!|||||||||
         PheAsnAsnThrGlySerProThrLysHisGluProSerLeuThrLysArgGluTrpGln
 62373 : TTTAACAATACAGGGTCCCCCACAAAGCATGAGCCTTCTCTCACCAAGAGAGAGTGGCAA : 62316

    56 : LysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluPro  >>>> :    74
         |||:!!|||||| !!|||||||||||||||||||||! !|||||||||||||||      
         LysGluLeuThrAlaGluGlnPheTyrValThrArgGlyLysGlyThrGluPro++    
 62315 : AAGGAGCTGACTGCAGAACAATTCTATGTCACAAGAGGAAAGGGAACAGAACCGgt.... : 62257

    75 :  Target Intron 1 >>>>  ProPheSerGlyIleTyrLeuAsnAsnLysGluAlaG :    86
              4875 bp           |||||||||||||||||||||||||||! !|||:!!|
                              ++ProPheSerGlyIleTyrLeuAsnAsnThrGluSerG
 62256 : .....................agCCTTTCAGTGGGATCTACCTGAATAACACGGAATCAG : 57348

    87 : lyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}  >>>> Target Intr :    99
         ||||||||||||||||||||||||||||||||||||||{||}           5236 bp
         lyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}++                
 57347 : GAATGTATCACTGTGTGTGTTGTGACAGCCCACTCTTC{AG}gt................ : 57305

   100 : on 2 >>>>  {r}SerGluLysLysTyrCysSerGlyThrGlyTrpProSerPheSerG :   115
                    {|}||||||||||||||||||||||||||||||||||||||||||||||
                  ++{r}SerGluLysLysTyrCysSerGlyThrGlyTrpProSerPheSerG
 57304 : .........ag{T}TCTGAGAAAAAGTACTGCTCTGGCACTGGATGGCCTTCATTTTCTG : 52025

   116 : luAlaHisGlyThrSerGlySerAspGluSerHisThrGlyIleLeuArgArgLeuAspT :   135
         ||||||||||||||!!!|||||||||||||||:!!|||||||||||||||!.!:!!||||
         luAlaHisGlyThrCysGlySerAspGluSerAsnThrGlyIleLeuArgHisValAspT
 52024 : AGGCTCATGGTACGTGTGGCTCTGATGAAAGTAACACAGGGATCCTGAGACACGTGGACA : 51965

   136 : hrSerLeuGlySerAlaArgThrGluValValCysLysGln  >>>> Target Intro :   149
         |||||||||||!!!!.!||||||||||||||||||||||||            948 bp 
         hrSerLeuGlyTrpValArgThrGluValValCysLysGln++                 
 51964 : CCTCGCTGGGATGGGTGCGCACAGAGGTTGTCTGCAAGCaggt................. : 51921

   150 : n 3 >>>>  CysGluAlaHisLeuGlyHisValPheProAspGlyProGlyProAsnGl :   165
                   |||||||||||||||||||||||||||||||||||||||||||||  !||
                 ++CysGluAlaHisLeuGlyHisValPheProAspGlyProGlyProAlaGl
 51920 : ........agTGTGAAGCTCATCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTGCTGG : 50927

   166 : yGlnArgPheCysIleAsnSerValAlaLeuLysPheLysProArgLysHis :   182
         ||||||||||||||||||||||||||||||||||||||||||||||  !|||
         yGlnArgPheCysIleAsnSerValAlaLeuLysPheLysProArgGlyHis
 50926 : TCAGAGGTTTTGCATCAACAGTGTGGCCCTGAAATTCAAGCCAAGGGGACAC : 50874

vulgar: SPP00000091_2.0 35 182 . JSZB01014487.1:subseq(130000,120000) 62373 50873 - 648 M 38 114 5 0 2 I 0 4871 3 0 2 M 25 75 S 0 2 5 0 2 I 0 5232 3 0 2 S 1 1 M 49 147 5 0 2 I 0 944 3 0 2 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	gene	50874	62373	648	-	.	gene_id 1 ; sequence SPP00000091_2.0 ; gene_orientation +
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	cds	62260	62373	.	-	.	
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	exon	62260	62373	.	-	.	insertions 0 ; deletions 0
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice5	62258	62259	.	-	.	intron_id 1 ; splice_site "GT"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	intron	57385	62259	.	-	.	intron_id 1
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice3	57385	57386	.	-	.	intron_id 0 ; splice_site "AG"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	cds	57308	57384	.	-	.	
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	exon	57308	57384	.	-	.	insertions 0 ; deletions 0
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice5	57306	57307	.	-	.	intron_id 2 ; splice_site "GT"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	intron	52072	57307	.	-	.	intron_id 2
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice3	52072	52073	.	-	.	intron_id 1 ; splice_site "AG"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	cds	51924	52071	.	-	.	
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	exon	51924	52071	.	-	.	insertions 0 ; deletions 0
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice5	51922	51923	.	-	.	intron_id 3 ; splice_site "gt"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	intron	50976	51923	.	-	.	intron_id 3
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	splice3	50976	50977	.	-	.	intron_id 2 ; splice_site "AG"
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	cds	50874	50975	.	-	.	
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	exon	50874	50975	.	-	.	insertions 0 ; deletions 0
JSZB01014487.1:subseq(130000,120000)	exonerate:protein2genome:local	similarity	50874	62373	648	-	.	alignment_id 1 ; Query SPP00000091_2.0 ; Align 62374 36 114 ; Align 57385 74 75 ; Align 52071 100 147 ; Align 50976 149 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis