TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (MSRB2) # Human Length=182 Score E Sequences producing significant alignments: (Bits) Value JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423,... 92.4 3e-19 JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259... 78.6 3e-15 JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, ... 52.4 3e-06 JSZB01045584.1 Manis javanica isolate MP_PG03-UM SCAFFOLD64758,... 51.2 7e-06 JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433,... 35.4 1.1 JSZB01006053.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6915, ... 34.3 2.8 JSZB01000811.1 Manis javanica isolate MP_PG03-UM SCAFFOLD899, w... 33.1 7.1 > JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423, whole genome shotgun sequence Length=367619 Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/52 (85%), Positives = 47/52 (90%), Gaps = 0/52 (0%) Frame = -3 Query 97 LFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ 148 +SSEKKYCSGTGWPSFSEAHGT GSDES+TGILR +DTSLG RTEVVCKQ Sbjct 182079 FYSSEKKYCSGTGWPSFSEAHGTCGSDESNTGILRHVDTSLGWVRTEVVCKQ 181924 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/35 (94%), Positives = 33/35 (94%), Gaps = 0/35 (0%) Frame = -3 Query 148 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 182 QCEAHLGHVFPDGPGP GQRFCINSVALKFKPR H Sbjct 180978 QCEAHLGHVFPDGPGPAGQRFCINSVALKFKPRGH 180874 Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 23/25 (92%), Positives = 24/25 (96%), Gaps = 0/25 (0%) Frame = -2 Query 74 PFSGIYLNNKEAGMYHCVCCDSPLF 98 PFSGIYLNN E+GMYHCVCCDSPLF Sbjct 187384 PFSGIYLNNTESGMYHCVCCDSPLF 187310 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/25 (80%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = -2 Query 49 LAKSEWQKKLTPEQFYVTREKGTEP 73 L K EWQK+LT EQFYVTR KGTEP Sbjct 192334 LTKREWQKELTAEQFYVTRGKGTEP 192260 > JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259, whole genome shotgun sequence Length=1168 Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 9/83 (11%) Frame = -1 Query 95 SPLFSSEKKYCSGTGWPS-FSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHL 153 +PLF S+ K+ +G GWPS F +G I + D S G R EV CK C AHL Sbjct 226 TPLFESDTKFDAGCGWPSYFKPINGEV--------IAEKTDRSHGMLRIEVQCKNCGAHL 71 Query 154 GHVFPDGPGPNGQRFCINSVALK 176 GHVF DGP P G R+CINS AL+ Sbjct 70 GHVFEDGPAPTGLRYCINSAALQ 2 > JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, whole genome shotgun sequence Length=1121306 Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 20/32 (63%), Positives = 25/32 (78%), Gaps = 0/32 (0%) Frame = -3 Query 148 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKP 179 QC AHLGH+F DGP P G+R+C+NS +L F P Sbjct 411954 QCGAHLGHIFDDGPRPTGKRYCVNSASLSFTP 411859 Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 23/28 (82%), Gaps = 0/28 (0%) Frame = -1 Query 45 CELPLAKSEWQKKLTPEQFYVTREKGTE 72 C++ ++ E +K+LTP Q++VT+EKGTE Sbjct 536636 CKVVFSQQELRKRLTPLQYHVTQEKGTE 536553 > JSZB01045584.1 Manis javanica isolate MP_PG03-UM SCAFFOLD64758, whole genome shotgun sequence Length=60558 Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 44/75 (59%), Gaps = 3/75 (4%) Frame = -3 Query 99 SSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFP 158 SS +KY SGTGWPS +EA G SG + H + L SA TE VC+ E H GHV P Sbjct 53935 SSSEKYGSGTGWPSSAEAPGMSG**K*HRNPKTEVWAPLESACTE-VCRPGEVHFGHVSP 53759 Query 159 DGPGPNGQRFCINSV 173 GQRFC+++V Sbjct 53758 G--LVVGQRFCMHTV 53720 > JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433, whole genome shotgun sequence Length=5080 Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 23/38 (61%), Gaps = 0/38 (0%) Frame = +2 Query 78 IYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 115 + L+++ G+Y C C LFSS KY + WP+F+E Sbjct 4967 LSLSSRLPGIYACAKCGYELFSSRSKYAHSSPWPAFTE 5080 > JSZB01006053.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6915, whole genome shotgun sequence Length=91027 Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 0/48 (0%) Frame = +3 Query 111 PSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFP 158 P F + T T +RR D ++G A+T+ V K+ HLG +FP Sbjct 76341 PHFVKKGKTQWIISLKTNKIRRKDITVGYAQTDRVKKRASTHLGDLFP 76484 > JSZB01000811.1 Manis javanica isolate MP_PG03-UM SCAFFOLD899, whole genome shotgun sequence Length=667254 Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/60 (32%), Positives = 31/60 (52%), Gaps = 1/60 (2%) Frame = +3 Query 105 CSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGH-VFPDGPGP 163 CSG +P+F + G+S +D H I + + + + T +C QC + H +F D GP Sbjct 151872 CSGCSFPTFIPSPGSSLTDTKHQLIFKLVLSPFIHSFT*HMCSQCLLYTIHSLFFDTEGP 152051 Lambda K H a alpha 0.317 0.134 0.431 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 50357089500 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40