Command line: [exonerate -m p2g --showtargetgff -q MSRB1.fa -t MSRB1.subseq.fa]
Hostname: [ws116074U]

C4 Alignment:
------------
         Query: SPP00000087_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Human 
        Target: JSZB01066426.1:subseq(0,1094) Manis javanica isolate MP_PG03-UM C40804119, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 195
   Query range: 67 -> 108
  Target range: 220 -> 343

  68 : LysValSerCysGlyLysCysGlyAsnGlyLeuGlyHisGluPheLeuAsnAspGlyProLysP :  89
       :!!||||||||||||!:!|||||||||||||||||||||||||||||||||||||||||||||!
       GlnValSerCysGlyArgCysGlyAsnGlyLeuGlyHisGluPheLeuAsnAspGlyProLysA
 221 : CAGGTGTCCTGTGGCAGGTGTGGCAACGGGCTGGGCCATGAGTTCCTGAACGACGGCCCCAAGC : 284

  90 : roGlyGlnSerArgPheUnkIlePheSerSerSerLeuLysPheValProLysGlyLys : 108
        !|||||||||||||||   ||||||||||||||||||||||||:!!|||||||||:!!
       rgGlyGlnSerArgPhe***IlePheSerSerSerLeuLysPheIleProLysGlyGlu
 285 : GGGGGCAGTCCCGCTTCTGAATATTCAGCAGCTCTCTGAAGTTCATCCCTAAAGGTGAG : 343

vulgar: SPP00000087_2.0 67 108 . JSZB01066426.1:subseq(0,1094) 220 343 + 195 M 41 123
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01066426.1:subseq(0,1094)	exonerate:protein2genome:local	gene	221	343	195	+	.	gene_id 1 ; sequence SPP00000087_2.0 ; gene_orientation .
JSZB01066426.1:subseq(0,1094)	exonerate:protein2genome:local	cds	221	343	.	+	.	
JSZB01066426.1:subseq(0,1094)	exonerate:protein2genome:local	exon	221	343	.	+	.	insertions 0 ; deletions 0
JSZB01066426.1:subseq(0,1094)	exonerate:protein2genome:local	similarity	221	343	195	+	.	alignment_id 1 ; Query SPP00000087_2.0 ; Align 221 68 123
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis