TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000087_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Human Length=116 Score E Sequences producing significant alignments: (Bits) Value JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433,... 79.0 1e-15 JSZB01066426.1 Manis javanica isolate MP_PG03-UM C40804119, who... 75.5 4e-15 JSZB01031082.1 Manis javanica isolate MP_PG03-UM SCAFFOLD40929,... 52.0 1e-06 JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259... 45.1 2e-04 JSZB01072159.1 Manis javanica isolate MP_PG03-UM C40872557, who... 43.9 5e-04 JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, ... 34.3 0.70 JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423,... 32.0 5.2 JSZB01001622.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1793, ... 32.0 5.3 JSZB01007870.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9110, ... 32.0 5.7 JSZB01006573.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7541, ... 32.0 5.8 JSZB01026868.1 Manis javanica isolate MP_PG03-UM SCAFFOLD34761,... 31.6 6.1 > JSZB01049819.1 Manis javanica isolate MP_PG03-UM SCAFFOLD72433, whole genome shotgun sequence Length=5080 Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 38/49 (78%), Positives = 41/49 (84%), Gaps = 1/49 (2%) Frame = +1 Query 32 SSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKV-SCGKCGNGLG 79 SSRSKYAHSSPWPAFTETIH DSVAKRPEHNR EALKV + + G+G Sbjct 1 SSRSKYAHSSPWPAFTETIHTDSVAKRPEHNRPEALKVGAAAESARGVG 147 Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 29/31 (94%), Positives = 30/31 (97%), Gaps = 0/31 (0%) Frame = +2 Query 18 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 48 PG+Y CAKCGYELFSSRSKYAHSSPWPAFTE Sbjct 4988 PGIYACAKCGYELFSSRSKYAHSSPWPAFTE 5080 > JSZB01066426.1 Manis javanica isolate MP_PG03-UM C40804119, whole genome shotgun sequence Length=1095 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 35/41 (85%), Positives = 39/41 (95%), Gaps = 0/41 (0%) Frame = +2 Query 68 KVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGK 108 +VSCG+CGNGLGHEFLNDGPK GQSRF IFSSSLKF+PKG+ Sbjct 221 QVSCGRCGNGLGHEFLNDGPKRGQSRF*IFSSSLKFIPKGE 343 > JSZB01031082.1 Manis javanica isolate MP_PG03-UM SCAFFOLD40929, whole genome shotgun sequence Length=385621 Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/37 (68%), Positives = 28/37 (76%), Gaps = 1/37 (3%) Frame = -3 Query 45 AFTETIHADSVAKRPEHNRSEALKV-SCGKCGNGLGH 80 AFTETIH DSVAKRPEHNR EALKV + + G+G Sbjct 385619 AFTETIHTDSVAKRPEHNRPEALKVGAAAESARGVGQ 385509 > JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259, whole genome shotgun sequence Length=1168 Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (56%), Gaps = 2/77 (3%) Frame = -1 Query 27 GYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEA-LKVSCGKCGNGLGHEFLND 85 G LF S +K+ WP++ + I+ + +A++ + + ++V C CG LGH F D Sbjct 229 GTPLFESDTKFDAGCGWPSYFKPINGEVIAEKTDRSHGMLRIEVQCKNCGAHLGHVF-ED 53 Query 86 GPKPGQSRFXIFSSSLK 102 GP P R+ I S++L+ Sbjct 52 GPAPTGLRYCINSAALQ 2 > JSZB01072159.1 Manis javanica isolate MP_PG03-UM C40872557, whole genome shotgun sequence Length=1660 Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 19/20 (95%), Positives = 19/20 (95%), Gaps = 0/20 (0%) Frame = -2 Query 1 MSFCSFFGGEVFQNHFEPGV 20 MSFCSFFGGEVFQNHFEPG Sbjct 1656 MSFCSFFGGEVFQNHFEPGT 1597 > JSZB01006555.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7521, whole genome shotgun sequence Length=1121306 Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 22/33 (67%), Gaps = 1/33 (3%) Frame = -3 Query 73 KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVP 105 +CG LGH F +DGP+P R+ + S+SL F P Sbjct 411954 QCGAHLGHIF-DDGPRPTGKRYCVNSASLSFTP 411859 > JSZB01014487.1 Manis javanica isolate MP_PG03-UM SCAFFOLD17423, whole genome shotgun sequence Length=367619 Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (3%) Frame = -3 Query 73 KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKG 107 +C LGH F DGP P RF I S +LKF P+G Sbjct 180978 QCEAHLGHVF-PDGPGPAGQRFCINSVALKFKPRG 180877 > JSZB01001622.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1793, whole genome shotgun sequence Length=157139 Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 23/42 (55%), Gaps = 0/42 (0%) Frame = +3 Query 47 TETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPK 88 +E + +VA H+ + A+ V+C CG+ GH+ GPK Sbjct 117054 SEPVKLRAVATLGPHSPTAAISVNCPVCGSPCGHQCCQQGPK 117179 > JSZB01007870.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9110, whole genome shotgun sequence Length=318656 Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (7%) Frame = -3 Query 62 NRSEALKVSCGKCGNGLGHEF-LNDGPKPGQSRFXIFSSSLKFVPK 106 R+E +K C CG G GHE L + +PG F SL F+P+ Sbjct 50724 QRTE*MKSDCASCGTGKGHEVALEEEDRPGGKSGAWF--SLDFIPQ 50593 > JSZB01006573.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7541, whole genome shotgun sequence Length=1446787 Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 23/44 (52%), Gaps = 6/44 (14%) Frame = +3 Query 67 LKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKET 110 L+V G CGNG H L+D PG + + F+PKG +T Sbjct 611976 LRVGTGVCGNGSKHSLLSDAGGPGPPAW------VAFLPKGGQT 612089 > JSZB01026868.1 Manis javanica isolate MP_PG03-UM SCAFFOLD34761, whole genome shotgun sequence Length=35299 Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 38/91 (42%), Gaps = 21/91 (23%) Frame = -2 Query 25 KCGYELFSSRSKYAHSSPWPAF--TETIHADSVAKRPEHNRSEALK-------------- 68 +CG+ SS+ S PWPAF T+T H V P+ RSE K Sbjct 27825 RCGH--ISSQGYALRSDPWPAFEPTQTKHKHGVVAAPQVRRSE*QKGCRPLRPQASLVLQ 27652 Query 69 --VSCGK-CGNGLGHEFLNDGPKPGQSRFXI 96 S G+ CG GLG + P P SR + Sbjct 27651 RMWSNGEICGVGLGQTQAHISPFPWSSRVAL 27559 Lambda K H a alpha 0.318 0.134 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21044639100 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40