Command line: [exonerate -m p2g --showtargetgff -q LRP2.fa -t LRP2.subseq.fa] Hostname: [ws116065U] C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 11350 Query range: 346 -> 3011 Target range: 96282 -> 4697 347 : ValGluPheAspAspCysGlnIleTrpGlyIleCysAspGlnLysCysGluSerArgPro : 366 !.!!!:||||||||||||||||||||||||||||||||||||! !||||||..!||| !! AlaAspPheAspAspCysGlnIleTrpGlyIleCysAspGlnIleCysGluAspArgThr 96282 : GCAGATTTTGATGATTGCCAGATATGGGGAATTTGTGACCAGATATGTGAAGACCGAACT : 96225 367 : GlyArgHisLeuCysHisCysGluGluGlyTyrIleLeuGluArgGlyGlnTyrCysLys : 386 |||!.!|||! !|||||||||! !|||||||||:!!||||||!.! !:!!:!!|||||| GlyHisHisGlnCysHisCysAlaGluGlyTyrValLeuGluHisGlnLysHisCysLys 96224 : GGCCATCACCAGTGCCACTGTGCAGAAGGGTATGTCTTGGAGCATCAGAAGCACTGCAAA : 96165 387 : AlaAsnAspSer{P} >>>> Target Intron 1 >>>> {he}GlyGluAlaSer : 395 |||||| !|||{!} 1587 bp { !}! !:!!!.!||| AlaAsnThrSer{S}++ ++{er}AspGlnValSer 96164 : GCTAATACTTCC{T}gt.........................ag{CT}GACCAGGTCTCC : 94551 396 : IleIlePheSerAsnGlyArgAspLeuLeuIleGlyAspIleHisGlyArgSerPheArg : 415 ||||||||||||||||||!:!|||||||||!!:||||||||| !! !|||!:!|||..! IleIlePheSerAsnGlyGlnAspLeuLeuMetGlyAspIleGlyGluArgAsnPheGlu 94550 : ATTATCTTCTCCAATGGCCAGGATTTGCTAATGGGTGATATTGGTGAAAGGAACTTTGAG : 94491 416 : IleLeuValGluSerGlnAsnArgGlyValAlaValGlyValAlaPheHisTyrHisLeu : 435 !!:|||||||||||||||!:!!.!||||||||||||||||||! !|||||||||!.!||| MetLeuValGluSerGlnSerHisGlyValAlaValGlyValAspPheHisTyrArgLeu 94490 : ATGCTGGTAGAGTCTCAAAGTCATGGAGTGGCTGTGGGTGTGGACTTTCACTATCGCCTA : 94431 436 : GlnArgValPheTrpThrAspThrValGlnAsnLys >>>> Target Intron 2 > : 448 ||||||||||||||||||||||||||||||:!!||| 1653 bp GlnArgValPheTrpThrAspThrValGlnAspLys++ 94430 : CAGAGAGTCTTTTGGACTGACACTGTGCAAGATAAGgt...................... : 94390 449 : >>> ValPheSerValAspIleAsnGlyLeuAsnIleGlnGluValLeuAsnValSerV : 466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ++ValPheSerValAspIleAsnGlyLeuAsnIleGlnGluValLeuAsnValSerV 94389 : ...aggTCTTTTCAGTTGATATTAATGGTTTAAATATCCAAGAAGTTCTCAATGTTTCTG : 92685 467 : alGluThrProGluAsnLeuAlaValAspTrpValAsnAsnLysIleTyrLeuValGluT : 486 ||!!: !||||||||||||||||||||||||:!!|||||||||:!!||||||||||||| alAspAspProGluAsnLeuAlaValAspTrpIleAsnAsnLysLeuTyrLeuValGluT 92684 : TTGATGATCCAGAAAATCTGGCTGTGGACTGGATTAATAATAAACTTTATCTGGTGGAGA : 92625 487 : hrLysValAsnArgIleAspMetValAsnLeuAspGlySerTyrArgValThrLeuIleT : 506 |||||||||||||||||!!::!!|||||||||||||||||| !!||||||! !||||||| hrLysValAsnArgIleGluValValAsnLeuAspGlySerAsnArgValIleLeuIleT 92624 : CCAAGGTCAACCGCATAGAAGTGGTCAATTTGGATGGAAGCAACCGTGTTATCCTTATAA : 92565 507 : hrGluAsnLeuGlyHisProArgGlyIleAlaValAspProThrVal{Gl} >>>> Ta : 522 ||||||||||||||||||||||||||||||||:!!|||||||||:!!{||} hrGluAsnLeuGlyHisProArgGlyIleAlaLeuAspProThrLeu{Gl}++ 92564 : CAGAAAACTTAGGGCATCCTAGAGGAATTGCCCTGGACCCAACTCTT{GG}gt....... : 92513 523 : rget Intron 3 >>>> {y}TyrLeuPhePheSerAspTrpGluSerLeuSerGlyG : 535 1035 bp {|}|||||||||||||||||||||..!||||||||||||| ++{y}TyrLeuPhePheSerAspTrpArgSerLeuSerGlyG 92512 : ..................ag{t}tatttatttttctcagattgGAGGAGCCTTTCTGGGG : 91443 536 : luProLysLeuGluArgAlaPheMetAspGlySerAsnArgLysAspLeuValLysThrL : 555 ||||||||:!!|||||||||||||||||||||!!!|||||||||!!:||||||||||||| luProLysValGluArgAlaPheMetAspGlyThrAsnArgLysGluLeuValLysThrL 91442 : AACCTAAGGTGGAAAGGGCTTTCATGGATGGCACCAACCGTAAGGAGTTGGTAAAAACAA : 91383 556 : ysLeuGlyTrpProAlaGlyValThrLeuAspMetIleSerLysArgValTyrTrpValA : 575 ||||||||||||||||||||:!!||||||||||||:!!|||||||||||||||||||||| ysLeuGlyTrpProAlaGlyIleThrLeuAspMetValSerLysArgValTyrTrpValA 91382 : AGCTGGGATGGCCCGCTGGGATAACTCTCGACATGGTATCAAAGCGTGTTTACTGGGTTG : 91323 576 : spSerArgPheAspTyrIleGluThrValThrTyrAspGlyIleGln{Ar} >>>> Ta : 591 ||!!!||||||:!!|||||||||||||||||||||||||||||||||{||} spCysArgPheAsnTyrIleGluThrValThrTyrAspGlyIleGln{Ar}++ 91322 : ACTGCCGTTTTAATTACATTGAGACTGTAACTTATGATGGAATTCAA{AG}gt....... : 91271 592 : rget Intron 4 >>>> {g}LysThrValValHisGlyGlySerLeuIleProHisP : 604 2188 bp {|}|||||||||:!!||||||||||||||||||||||||| ++{g}LysThrValIleHisGlyGlySerLeuIleProHisP 91270 : ..................ag{G}AAGACAGTAATTCATGGAGGCTCACTTATTCCTCATC : 89048 605 : roPheGlyValSerLeuPheGluGlyGlnValPhePheThrAspTrpThrLysMetAlaV : 624 ||||||||:!!||||||||||||..!!!.:!!|||||||||||||||||||||||||||| roPheGlyIleSerLeuPheGluAsnHisIlePhePheThrAspTrpThrLysMetAlaV 89047 : CCTTTGGAATAAGCTTGTTTGAAAATCACATATTCTTTACTGATTGGACAAAGATGGCAG : 88988 625 : alLeuLysAlaAsnLysPheThrGluThrAsnProGlnValTyrTyrGlnAlaSerLeuA : 644 ||:!!|||||||||||||||! !||||||!:!|||:!!||||||||||||:!!||||||| alMetLysAlaAsnLysPheLysGluThrSerProGluValTyrTyrGlnSerSerLeuA 88987 : TAATGAAGGCAAACAAGTTCAAGGAGACCAGCCCAGAAGTGTACTACCAGTCTTCCCTGA : 88928 645 : rgProTyrGlyValThrValTyrHisSerLeuArgGlnProTyr{A} >>>> Target : 659 |||||!:!||||||.!!|||||||||||||||||||||||||||{!} 23 rgProPheGlyValAlaValTyrHisSerLeuArgGlnProTyr{V}++ 88927 : GGCCCTTTGGAGTGGCTGTTTATCATTCTCTCAGGCAGCCCTAT{G}gt........... : 88880 660 : Intron 5 >>>> {la}ThrAsnProCysLysAspAsnAsnGlyGlyCysGluGlnV : 673 51 bp {.!}!.!||||||||| !|||:!!||||||||||||||||||| ++{al}AsnAsnProCysGlyAspAspAsnGlyGlyCysGluGlnV 88879 : ..............ag{TT}AACAACCCATGTGGAGATGACAATGGTGGCTGTGAACAGG : 86490 674 : alCysValLeuSerHisArgThrAspAsnAspGlyLeuGlyPheArgCysLysCysThrP : 693 |||||:!!|||||||||||||||||||||||||||||||||!:!|||||||||||| !. alCysIleLeuSerHisArgThrAspAsnAspGlyLeuGlyTyrArgCysLysCysArgL 86489 : TCTGCATCCTCAGCCACAGAACAGATAACGATGGTCTGGGTTACCGCTGCAAATGCCGAC : 86430 694 : heGlyPheGlnLeuAspThrAspGluArgHisCysIle{A} >>>> Target Intro : 706 !!||||||.!.||||||..!|||...|||||||||:!!{|} 4258 bp euGlyPheAspLeuAspValAspSerArgHisCysVal{A}++ 86429 : TTGGCTTTGACCTGGACGTGGACAGCCGCCACTGCGTC{G}gt................. : 86388 707 : n 6 >>>> {la}ValGlnAsnPheLeuIlePheSerSerGlnValAlaIleArgGlyI : 722 {||}:!!::!.!.||||||:!!|||||||||:!!||||||:!!||||||| ++{la}LeuArgGlnPheLeuLeuPheSerSerGluValAlaValArgGlyI 86387 : ........ag{CT}CTCAGGCAGTTCCTGCTCTTCTCATCCGAAGTGGCTGTTCGTGGCA : 82085 723 : leProPheThrLeuSerThrGlnGluAspValMetValProValSerGlyAsnProSerP : 742 ||||||||!.!|||||||||||||||||||||!!::!!||||||!!!! ||||||| leProPheAsnLeuSerThrGlnGluAspValIleLeuProValThrGluMetProSerP 82084 : TCCCATTCAACCTCTCTACTCAGGAAGATGTCATACTTCCAGTGACAGAaatgccttctt : 82025 743 : hePheValGlyIleAspPheAspAlaGlnAspSerThrIlePhePheSerAspMetSerL : 762 |||||||||||||||||||||||||| !!!:!:!|||||||||!:!||||||! |||| hePheValGlyIleAspPheAspAlaTrpGluAsnThrIlePheTyrSerAspThrSerL 82024 : tctttgttGGAATTGATTTTGATGCCTGGGAGAACACTATCTTTTATTCAGATACATCAA : 81965 763 : ysHisMetIlePheLysGlnLysIleAspGlyThr{G} >>>> Target Intron 7 : 774 |||||!!:|||||||||||| ! :!!:!!||||||{|} 8925 bp ysHisIleIlePheLysGlnTyrValAsnGlyThr{G}++ 81964 : AACACATAATCTTTAAACAATATGTCAATGGCACA{G}gt.................... : 81926 775 : >>>> {ly}ArgGluIleLeuAlaAlaAsnArgValGluAsnValGluSerLeuAlaP : 791 {||}||||||||||||.!!|||:!!||||||:!!!:!||||||||||||.!!| ++{ly}ArgGluIleLeuThrAlaAspArgValGlnSerValGluSerLeuThrP 81925 : .....ag{GA}AGAGAAATTCTCACAGCTGACAGGGTGCAAAGTGTTGAAAGTTTGACTT : 72953 792 : heAspTrpIleSerLysAsnLeuTyrTrpThrAspSerHisTyrLysSerIleSerValM : 811 |||||||||||||||||||||||||||||||||||:!! !|||||||||:!!||||||! heAspTrpIleSerLysAsnLeuTyrTrpThrAspAlaSerTyrLysSerValSerValI 72952 : TTGATTGGATTTCAAAGAATCTTTATTGGACGGATGCGTCTTACAAAAGTGTCAGTGTCA : 72893 812 : etArgLeuAlaAspLysThrArgArgThrValValGlnTyrLeuAsnAsnProArgSerV : 831 !:||||||!.!||||||:!!|||||| !:!!|||||| !!|||||||||||||||:!!: leArgLeuValAspLysSerArgArgGluIleValGlnAsnLeuAsnAsnProArgAlaI 72892 : TAAGGCTAGTTGATAAATCGAGACGTGAAATAGTCCAGAATTTAAATAATCCACGAGCAA : 72833 832 : alValValHisProPheAla{Gl} >>>> Target Intron 8 >>>> {y}TyrL : 840 !!||||||||||||.!!|||{||} 2262 bp {|}|||: leValValHisProIleAla{Gl}++ ++{y}TyrI 72832 : TCGTAGTTCATCCTATTGCT{GG}gt.........................ag{A}TATA : 70544 841 : euPhePheThrAspTrpPheArgProAlaLysIleMetArgAlaTrpSerAspGlySerH : 860 !!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||: lePhePheThrAspTrpPheArgProAlaLysIleMetArgAlaTrpSerAspGlySerA 70543 : TATTCTTCACCGATTGGTTCCGTCCTGCTAAAATTATGAGAGCATGGAGTGATGGATCTA : 70484 861 : isLeuLeuProValIleAsnThrThrLeuGlyTrpProAsnGlyLeuAlaIleAspTrp{ : 880 !!|||||||||:!!:!!||||||||||||||||||||||||||||||||||||||||||{ snLeuLeuProIleValAsnThrThrLeuGlyTrpProAsnGlyLeuAlaIleAspTrp{ 70483 : ACCTTTTGCCTATAGTAAACACTACTCTTGGATGGCCCAATGGATTAGCCATTGATTGG{ : 70424 881 : Al} >>>> Target Intron 9 >>>> {a}AlaSerArgLeuTyrTrpValAspA : 889 ! } 881 bp {!}|||! !||||||||||||||||||| As}++ ++{p}AlaLeuArgLeuTyrTrpValAspA 70423 : GA}gt.........................ag{t}GCTTTACGATTGTACTGGGTAGATG : 69516 890 : laTyrPheAspLysIleGluHisSerThrPheAspGlyLeuAspArgArgArgLeuGlyH : 909 || !|||||||||||||||||||||||||||||||||! !||||||||| !||||||| laLeuPheAspLysIleGluHisSerThrPheAspGlySerAspArgArgAlaLeuGlyH 69515 : CGCTTTTTGATAAAATTGAGCACAGCACCTTTGATGGTTCAGATAGAAGAGCCCTGGGCC : 69456 910 : isIleGluGlnMetThrHisProPheGlyLeuAlaIlePheGly{G} >>>> Target : 924 |||||:!!||||||||||||||||||||||||.!!|||||| !{!} 2 isIleGlnGlnMetThrHisProPheGlyLeuThrIlePheGln{A}++ 69455 : ATATACAGCAGATGACACATCCATTTGGACTTACTATCTTTCAA{G}gt........... : 69408 925 : Intron 10 >>>> {lu}HisLeuPhePheThrAspTrpArgLeuGlyAlaIleIle : 937 748 bp {!:}:!!:!!|||.!!|||||||||||||||! !||||||:!! ++{sp}TyrValPheLeuThrAspTrpArgLeuAspAlaIleLeu 69407 : ...............ag{AT}TATGTATTTCTTACTGACTGGAGGCTGGATGCTATCCTT : 66624 938 : ArgValArgLysAlaAspGlyGlyGluMetThrValIleArgSerGlyIleAlaTyrIle : 957 ||||||||||||.!!|||||||||!!:! !||||||:!!||||||||||||::! !!:!! ArgValArgLysThrAspGlyGlyAspArgThrValLeuArgSerGlyIleSerAsnVal 66623 : CGAGTCAGGAAAACTGATGGTGGAGATAGGACAGTTCTCCGAAGTGGCATCAGTAATGTA : 66564 958 : LeuHisLeuLysSerTyrAspValAsnIleGlnThr{G} >>>> Target Intron : 970 :!!:!!:!!||||||||||||!.!|||! !||||||{|} 372 bp MetAsnValLysSerTyrAspAlaAsnThrGlnThr{G}++ 66563 : ATGAATGTGAAATCCTATGATGCCAACACCCAGACA{G}gt................... : 66522 971 : 11 >>>> {ly}SerAsnAlaCysAsnGlnProThrHisProAsnGlyAspCysSerHi : 986 {||}|||||| !|||:!!!:!|||.!!||||||||||||||||||||||| ++{ly}SerAsnTyrCysAspArgProAlaHisProAsnGlyAspCysSerHi 66521 : .......ag{GT}TCTAACTACTGTGACCGACCGGCCCACCCCAACGGTGACTGCAGCCA : 66105 987 : sPheCysPheProValProAsnPheGlnArgValCysGlyCysProTyrGlyMetArgLe : 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||!!!|| sPheCysPheProValProAsnPheGlnArgValCysGlyCysProTyrGlyMetSerLe 66104 : CTTCTGCTTCCCAGTGCCAAATTTCCAGCGGGTGTGTGGTTGCCCTTATGGAATGAGTTT : 66045 1007 : uAlaSerAsnHisLeuThrCysGluGlyAspProThrAsnGluProProThrGluGlnCy : 1026 |.!!|||!:!||||||||||||! !! !||||||:!!|||||||||||| !|||! !|| uThrSerSerHisLeuThrCysValGluAspProSerAsnGluProProLeuGluProCy 66044 : GACTTCCAGTCACTTGACTTGTGTGGAAGACCCATCCAACGAACCGCCCCTGGAACCATG : 65985 1027 : sGlyLeuPheSerPheProCysLysAsnGlyArgCysValProAsnTyrTyrLeuCysAs : 1046 |||| ...|||||||||||| !:!||| !!||||||||| !!! !|||! !||||| sGlySerLeuSerPheProCysAspSerGlyGlyCysValProTyrSerTyrArgCysAs 65984 : TGGctccctttcctttccctgtgaCAGTGGTGGATGTGTGCCCTATTCCTACCGCTGTGA : 65925 1047 : pGlyValAspAspCysHisAspAsnSerAspGluGlnLeuCysGlyThrLeu{A} >>> : 1064 ||||:!!:!!||||||:!!|||||||||||||||!!.! !|||||||||!!!{|} pGlyIleAsnAspCysTyrAspAsnSerAspGluHisGlnCysGlyThrPhe{A}++ 65924 : TGGAATCAATGACTGTTACGATAATAGCGACGAGCATCAGTGTGGCACATTC{A}gt... : 65868 1065 : > Target Intron 12 >>>> {sn}AsnThrCysSerSerSerAlaPheThrCysG : 1075 1149 bp {||}|||:!!|||:!!||||||||||||||||||| ++{sn}AsnSerCysAlaSerSerAlaPheThrCysG 65867 : .......................ag{AT}AATTCCTGTGCCTCTTCAGCATTCACCTGTG : 64689 1076 : lyHis<->GlyGluCysIleProAlaHisTrpArgCysAspLysArgAsnAspCysValA : 1094 ||||| |||! !|||||||||||| !|||!.!|||||||||!.!!!.||||||:!!| lyHisGlyGlyGlyCysIleProAlaSerTrpHisCysAspLysHisLysAspCysLeuA 64688 : GCCATGGAGGAGGGTGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGG : 64629 1095 : spGlySerAspGluHisAsnCysProThrHisAlaProAlaSerCysLeuAspThrGlnT : 1114 ||||||||||||||!!.||||||||||||!!.||||||.!!||||||! !! :!! ! ! spGlySerAspGluGlnAsnCysProThrGlnAlaProThrSerCysSerAlaSerTyrP 64628 : ATGGCAGTGATGAGCAGAACTGCCCCACCCAAGCACCCACTTCCTGCTCTGCATCCTACT : 64569 1115 : yrThrCysAspAsnHisGlnCysIleSerLysAsnTrpValCysAspThrAspAsnAspC : 1134 :!||||||||||||:!!!:!|||||| !!|||||||||:!!||||||||||||||||||| heThrCysAspAsnTyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAspC 64568 : TCACTTGTGATAATTACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGATT : 64509 1135 : ysGlyAspGlySerAspGluLysAsnCys{A} >>>> Target Intron 13 >>>> : 1144 ||! !||||||||||||||||||||||||{!} 1102 bp ysGluAspGlySerAspGluLysAsnCys{T}++ 64508 : GTGAAGATGGTTCTGATGAAAAGAACTGT{A}gt.......................... : 64476 1145 : {sn}SerThrGluThrCysGlnProSerGlnPheAsnCysProAsnHisArgCysIle : 1162 {..}! !||||||||||||! !||||||||||||:!!||||||:!!|||||||||||| ++{hr}PheThrGluThrCysLeuProSerGlnPheHisCysProAspHisArgCysIle 64475 : ag{CA}TTTACAGAGACATGCCTGCCTAGTCAGTTTCACTGCCCTGACCATCGATGTATT : 63323 1163 : AspLeuSerPheValCysAspGlyAspLysAspCysValAspGlySerAspGluValGly : 1182 |||||||||||||||||||||||||||:!!|||||||||||||||||||||||| !..! AspLeuSerPheValCysAspGlyAspGluAspCysValAspGlySerAspGluAsnAsn 63322 : GATCTATCTTTTGTCTGTGATGGGGATGAGGACTGTGTTGATGGATCTGATGAGAATAAT : 63263 1183 : Cys{V} >>>> Target Intron 14 >>>> {al}LeuAsnCysThrAlaSerGl : 1191 |||{|} 103 bp {||}:::||||||||||||||||| Cys{V}++ ++{al}IleAsnCysThrAlaSerGl 63262 : TGT{G}gt..........................ag{ta}attaattgtacAGCTTCTCA : 63133 1192 : nPheLysCysAlaSerGlyAspLysCysIleGlyValThrAsnArgCysAspGlyValPh : 1211 ||||||||||||||||! !|||:!!||||||.!!! !.!! !!!.!|||||||||||||| nPheLysCysAlaSerGluAspGlnCysIleSerAspAlaTyrHisCysAspGlyValPh 63132 : ATTCAAATGTGCCAGTGAAGATCAGTGTATTAGCGACGCATATCATTGTGATGGTGTTTT : 63073 1212 : eAspCysSerAspAsnSerAspGluAlaGlyCys{P} >>>> Target Intron 15 : 1223 |||||||!:!|||:!!||||||||| !! !|||{|} 1607 bp eAspCysAsnAspHisSerAspGluLysAspCys{P}++ 63072 : TGACTGTAATGACCATTCTGATGAGAAAGACTGT{C}gt..................... : 63034 1224 : >>>> {ro}ThrArgProProGlyMetCysHisSerAspGluPheGlnCysGlnGluA : 1240 {||}||||||||||||||||||||||||:!!|||||||||||||||||||||| ++{ro}ThrArgProProGlyMetCysHisAlaAspGluPheGlnCysGlnGluA 63033 : .....ag{CA}ACCAGGCCTCCTGGTATGTGCCATGCAGATGAATTTCAGTGTCAAGAAG : 61379 1241 : spGlyIleCysIleProAsnPheTrpGluCysAspGlyHisProAspCysLeuTyrGlyS : 1260 |||||:!!|||||||||... !|||||||||||||||||| !!||||||:!! !|||| spGlyValCysIleProGlySerTrpGluCysAspGlyHisSerAspCysIleLeuGlyS 61378 : ATGGTGTCTGCATTCCGGGGAGCTGGGAGTGTGATGGTCACTCAGACTGCATCCTTGGTT : 61319 1261 : erAspGluHisAsnAlaCysValProLysThrCysProSerSerTyrPheHisCysAspA : 1280 |||||||||||:!!!.!|||! !|||!:!||||||! ! !!|||:!!|||! !||||||| erAspGluHisHisGlyCysGlyProArgThrCysLeuProSerHisPheLeuCysAspA 61318 : CTGATGAGCACCATGGCTGTGGCCCCAGGACCTGCCTTCCATCTCATTTCCTCTGTGACA : 61259 1281 : snGlyAsnCysIleHisArgAlaTrpLeuCysAspArgAspAsnAspCysGlyAspMetS : 1300 ||||||||||||||||||||!.!|||||||||||| !!|||||||||||| !||||||| snGlyAsnCysIleHisArgGlyTrpLeuCysAspGlyAspAsnAspCysMetAspMetS 61258 : ATGGAAACTGCATTCACAGAGGGTGGCTCTGTGATGGGGACAATGACTGCATGGATATGA : 61199 1301 : erAspGluLysAspCysProThrGlnProPheArgCysProSerTrpGlnTrpGlnCysL : 1320 |||||||||||||||||||||||||||||||| !|||! !||| !!||||||!!.|||! erAspGluLysAspCysProThrGlnProPheTyrCysLeuSerGlyGlnTrpHisCysP 61198 : GTGATGAGAAGGACTGTCCCACTCAGCCCTTTTACTGCCTCAGTGGGCAATGGCATTGCC : 61139 1321 : euGlyHisAsnIleCysValAsnLeuSerValValCysAspGlyIlePheAspCysProA : 1340 !|||:!!!:!||||||||||||||||||!.!|||||||||||||||! !|||||||||| roGlyTyrSerIleCysValAsnLeuSerAlaValCysAspGlyIleSerAspCysProA 61138 : CCGGCTATAGCATCTGTGTGAATCTGAGTGCAGTGTGTGATGGCATCTCTGACTGCCCCA : 61079 1341 : snGlyThrAspGluSerProLeuCys{A} >>>> Target Intron 16 >>>> { : 1349 ||||||||||||||||||||!!!|||{|} 1145 bp { snGlyThrAspGluSerProPheCys{A}++ ++{ 61078 : ATGGGACAGATGAGTCCCCATTTTGC{A}gt..........................ag{ : 59906 1350 : sn}GlyAsnSerCysSerAspPheAsnGlyGlyCysThrHisGluCysValGlnGluPro : 1368 ||} !:!!||||||||||||! !|||!.!||||||||||||:!!|||:!!|||! !||| sn}GlnAspSerCysSerAspSerAsnAlaGlyCysThrHisGlnCysIleGlnGlyPro 59905 : AC}CAGGACAGCTGCTCAGATTCCAATGCTGGTTGTACTCACCAGTGTATTCAAGGACCC : 59850 1369 : PheGlyAlaLysCysLeuCysProLeuGlyPheLeuLeuAlaAsnAspSerLysThrCys : 1388 |||||||||:!!|||:!!||||||!!!|||!:!||||||||||||||||||||||||||| PheGlyAlaGlnCysValCysProPheGlyTyrLeuLeuAlaAsnAspSerLysThrCys 59849 : TTTGGGGCTCAATGTGTCTGTCCATTTGGATACCTGCTTGCCAATGATTCTAAGACCTGT : 59790 1389 : GluAspIleAspGluCysAspIleLeuGlySerCysSerGlnHisCysTyrAsnMetArg : 1408 ||||||||||||||||||||||||! !|||! !|||||||||||||||||||||! !||| GluAspIleAspGluCysAspIleProGlyPheCysSerGlnHisCysTyrAsnThrArg 59789 : GAAGATATAGATGAATGTGACATTCCAGGCTTTTGTAGCCAGCACTGTTACAATACGAGA : 59730 1409 : GlySerPheArgCysSerCysAspThrGlyTyrMetLeuGluSerAspGlyArgThrCys : 1428 |||||||||||||||!!!||||||! !! !|||||||||!!::!!||| !||||||||| GlySerPheArgCysTrpCysAspLysGluTyrMetLeuAspAlaAspGlnArgThrCys 59729 : GGTTCTTTCCGGTGCTGGTGTGACAAAGAATACATGTTAGACGCTGACCAGAGGACTTGC : 59670 1429 : LysValThr{A} >>>> Target Intron 17 >>>> {la}SerGluSerLeuLe : 1437 |||!.!|||{|} 1224 bp {||}|||||||||||||| LysAlaThr{A}++ ++{la}SerGluSerLeuLe 59669 : AAAGCTACA{G}gt..........................ag{CT}TCTGAAAGTCTGCT : 58419 1438 : uLeuLeuValAlaSerGlnAsnLysIleIleAlaAspSerValThrSerGlnValHisAs : 1457 ||||||||||||||||::!|||:!!|||:!!||||||!:!:!!|||||||||! !||||| uLeuLeuValAlaSerArgAsnGlnIleValAlaAspAsnIleThrSerGlnGlyHisAs 58418 : GCTCCTTGTGGCAAGCAGGAACCAAATTGTTGCTGACAATATCACTTCCCAGGGTCACAA : 58359 1458 : nIleTyrSerLeuValGluAsnGlySerTyrIleValAlaValAspPheAspSerIleSe : 1477 |:!! ! ||||||:!!:!!|||||||||:!!|||||||||:!!||||||||||||:!!|| nValGlnSerLeuIleGlnAsnGlySerHisIleValAlaIleAspPheAspSerValSe 58358 : TGTCCAATCACTCATACAGAATGGTTCTCACATCGTAGCTATTGACTTTGATTCTGTCAG : 58299 1478 : rGlyArgIlePheTrpSerAspAlaThrGlnGlyLysThrTrpSerAlaPheGlnAsnGl : 1497 ||||||||||||||||||||||!.!||||||||||||! !|||||||||.!!|||||||| rGlyArgIlePheTrpSerAspGlyThrGlnGlyLysIleTrpSerAlaLeuGlnAsnGl 58298 : CGGTCGCATCTTTTGGTCTGATGGAACTCAGGGTAAAATCTGGAGTGCGCTTCAAAATGG : 58239 1498 : yThrAspArgArgVal >>>> Target Intron 18 >>>> ValPheAspSerSe : 1507 |||||||!!!!:!||| 797 bp :!! !!||||||.! yThrAspSerLysVal++ ++IleValAspSerGl 58238 : AACAGACAGCAAAGTAgt..........................agATAGTTGACAGTGG : 57412 1508 : rIleIleLeuThrGluThrIleAlaIleAspTrpValGlyArgAsnLeuTyrTrpThrAs : 1527 !:!!! !:!!||||||!:!||||||:!!|||||||||||||||!!.|||||||||||||| yValThrMetThrGluSerIleAlaValAspTrpValGlyArgLysLeuTyrTrpThrAs 57411 : TGTCACCATGACTGAAAGTATTGCAGTAGATTGGGTAGGTCGCAAACTTTACTGGACAGA : 57352 1528 : pTyrAlaLeuGluThrIleGluValSerLysIleAspGlySerHisArgThrValLeuIl : 1547 ||||||||||||||||||||||||||||:!!:!:||||||!!!:!!|||||||||||||| pTyrAlaLeuGluThrIleGluValSerGluLeuAspGlyArgTyrArgThrValLeuIl 57351 : CTATGCTCTGGAAACAATTGAAGTCTCTGAACTGGATGGGAGGTACCGGACTGTGCTGAT : 57292 1548 : eSerLysAsnLeuThrAsnProArgGlyLeuAlaLeuAspProArgMet{As} >>>> : 1564 |||| |||:!!|||||||||||||||||||||||||||||||||!!:{!:} eSerValAsnValThrAsnProArgGlyLeuAlaLeuAspProArgIle{Se}++ 57291 : TAGTGTCAATGTAACAAATCCAAGAGGACTAGCATTAGATCCTAGAATT{Ag}gt..... : 57237 1565 : Target Intron 19 >>>> {n}GluHisLeuLeuPheTrpSerAspTrpGlyHisH : 1576 8567 bp {!}!!:||||||:!!||||||||||||||||||!.!| ++{r}AspHisLeuMetPheTrpSerAspTrpGlyArgH 57236 : .....................ag{T}GACCATCTGATGTTCTGGTCTGACTGGGGCCGTC : 48638 1577 : isProArgIleGluArgAlaSerMetAspGlySerMetArgThrValIleValGlnAspL : 1596 |||||!.!||||||||||||||||||||||||||| !|||||||||||||||||||||| isProHisIleGluArgAlaSerMetAspGlySerGluArgThrValIleValGlnAspL 48637 : ACCCTCATATCGAGCGAGCCAGCATGGATGGCAGTGAGCGCACTGTCATTGTCCAGGACA : 48578 1597 : ysIlePheTrpProCysGlyLeuThrIleAspTyrProAsnArgLeuLeuTyrPheMetA : 1616 |||||!:!|||||| !|||||||||||||||||| !!|||||||||:!!|||||||||| ysIleTyrTrpProAsnGlyLeuThrIleAspTyrAlaAsnArgLeuIleTyrPheMetA 48577 : AGATTTACTGGCCCAATGGCTTAACTATTGACTATGCCAACAGACTGATTTACTTTATGG : 48518 1617 : spSerTyrLeuAspTyrMetAspPheCysAspTyrAsnGlyHisHisArgArgGlnValI : 1636 ||:!!||||||||||||!!:|||!!.|||:!!|||:!!|||||||||||||||||||||| spAlaTyrLeuAspTyrIleAspLeuCysAsnTyrAspGlyHisHisArgArgGlnValI 48517 : ATGCCTACCTTGATTACATAGACTTGTGTAATTATGATGGACACCATCGGAGGCAGGTGA : 48458 1637 : leAlaSerAspLeu >>>> Target Intron 20 >>>> IleIleArgHisProT : 1646 |||||||||||||| 950 bp !!::!:|||||||||| leAlaSerAspLeu++ ++MetLeuArgHisProT 48457 : TAGCCAGTGATTTGgt..........................agATGCTGCGGCATCCCT : 47478 1647 : yrAlaLeuThrLeuPheGluAspSerValTyrTrpThrAspArgAlaThrArgArgValM : 1666 ||||||||||||||||||||||||||:!!|||||||||||| !||||||!.!||||||| yrAlaLeuThrLeuPheGluAspSerMetTyrTrpThrAspTyrAlaThrHisArgValM 47477 : ATGCCCTGACTCTCTTTGAGGATTCCATGTACTGGACTGACTATGCTACTCACCGTGTCA : 47418 1667 : etArgAlaAsnLysTrpHisGlyGlyAsnGlnSerValValMetTyrAsnIleGlnTrpP : 1686 ||!:!|||||||||||||||||||||||||||||||||:!!!!:||||||:!!!!. !| etGlnAlaAsnLysTrpHisGlyGlyAsnGlnSerValIleIleTyrAsnValHisGlnP 47417 : TGCAAGCCAACAAGTGGCACGGGGGAAACCAGTCAGTCATAATATATAATGTTCATCAGC : 47358 1687 : roLeuGlyIleValAlaValHisProSerLysGlnProAsn{S} >>>> Target In : 1700 |||||||||||||||||||||||||| !|||!!.||||||{|} 4626 roLeuGlyIleValAlaValHisProValLysHisProAsn{S}++ 47357 : CCCTTGGGATTGTTGCAGTTCATCCTGTGAAACACCCAAAC{T}gt.............. : 47313 1701 : tron 21 >>>> {er}ValAsnProCysAlaPheSerArgCysSerHisLeuCysLeu : 1714 bp {||}..!||| !!|||||||||||| !|||||||||||||||||| ++{er}ThrAsnSerCysAlaPheSerSerCysSerHisLeuCysLeu 47312 : ............ag{CC}ACAAACTCATGTGCCTTTTCGTCCTGCAGCCATCTATGCCTG : 42648 1715 : LeuSerSerGlnGlyProHisPheTyrSerCysValCysProSerGlyTrpSerLeuSer : 1734 ||||||!!!|||..!||| !! !||||||!.!|||||||||||||||||||||||| LeuSerThrGlnAsnProGlyArgCysSerCysAlaCysProSerGlyTrpSerLeuSer 42647 : CTTTCTACACAGAACCCTGGGCGTTGCTCCTGTGCTTGTCCTTCAGGGTGGAGTCTCTCT : 42588 1735 : ProAspLeuLeuAsnCysLeuArg{A} >>>> Target Intron 22 >>>> {sp : 1743 ! !|||! !:!!!.!|||! !|||{|} 4774 bp {|| HisAspSerValThrCysSerArg{A}++ ++{sp 42587 : CACGACTCTGTGACTTGCTCAAGA{G}gt..........................ag{at : 37786 1744 : }AspGlnProPheLeuIleThrValArgGlnHisIleIlePheGlyIleSerLeuAsnPr : 1763 }:::|||||||||||||||.!!||||||!!. !|||||||||||||||||||||||||| }GluGlnProPheLeuIleAlaValArgHisSerIleIlePheGlyIleSerLeuAsnPr 37785 : }gaacagCCTTTCTTAATAGCTGTAAGACACAGTATAATTTTTGGAATCTCCCTTAACCC : 37727 1764 : oGluValLysSerAsnAspAlaMetValProIleAlaGlyIleGlnAsnGlyLeuAspVa : 1783 |||||||:!!!!!||||||||||||:!!||||||!.!||||||! !||||||! !|||!. oGluValGluThrAsnAspAlaMetIleProIleValGlyIleLeuAsnGlyTyrAspAl 37726 : TGAGGTGGAGACCAATGATGCAATGATCCCCATAGTAGGAATACTGAATGGTTATGATGC : 37667 1784 : lGluPheAspAspAlaGluGlnTyrIleTyrTrpValGluAsnPro >>>> Target : 1799 !||||||||||||:!!||||||!:!||||||||||||||||||||| 93 aGluPheAspAspSerGluGlnPheIleTyrTrpValGluAsnPro++ 37666 : TGAATTTGATGACTCAGAGCAGTTCATCTATTGGGTTGAGAATCCAgt............ : 37617 1800 : Intron 23 >>>> GlyGluIleHisArgValLysThrAspGlyThrAsnArgThrVa : 1813 1 bp |||||||||||||||||||||||||||||||||||||||||||| ++GlyGluIleHisArgValLysThrAspGlyThrAsnArgThrVa 37616 : ..............aggGTGAAATTCACCGAGTGAAGACAGATGGCACCAACAGGACAGT : 36646 1814 : lPheAlaSerIleSerMetValGlyProSerMetAsnLeuAlaLeuAspTrpIleSerAr : 1833 |.!!!.! !!!!:|||! :!!||| !!||||||!:!|||:!!|||||||||||||||!: lLeuValProMetSerSerMetGlySerSerMetSerLeuSerLeuAspTrpIleSerLy 36645 : GCTTGTTCCTATGTCTAGTATGGGGTCTTCTATGAGCCTGTCCTTAGATTGGATATCAAA : 36586 1834 : gAsnLeuTyrSerThrAsnProArgThrGlnSerIleGlu >>>> Target Intron : 1847 !|||||||||! !||||||||| !!||||||||||||||| 4248 bp sAsnLeuTyrTyrThrAsnProGlyThrGlnSerIleGlu++ 36585 : AAACTTGTATTACACTAATCCTGGAACTCAGTCCATTGAGgt.................. : 36542 1848 : 24 >>>> ValLeuThrLeuHisGlyAspIleArgTyrArgLysThrLeuIleAlaAs : 1863 |||||||||||| ! ||||||:!!|||||||||||||||||||||.!!|| ++ValLeuThrLeuLysGlyAspValArgTyrArgLysThrLeuIleThrAs 36541 : ........agGTTTTGACACTAAAGGGAGATGTCAGATACAGAAAAACACTCATTACCAA : 32248 1864 : nAspGlyThrAlaLeuGlyValGlyPheProIleGlyIleThrValAspProAlaArg{G : 1883 |||||||||||||:!!|||||||||||||||:!!|||:!!||||||||||||!.!!.!{| nAspGlyThrAlaValGlyValGlyPheProValGlyValThrValAspProValHis{G 32247 : TGATGGGACTGCCGTTGGAGTTGGTTTTCCAGTTGGCGTAACTGTTGATCCTGTTCAT{G : 32188 1884 : l} >>>> Target Intron 25 >>>> {y}LysLeuTyrTrpSerAspGlnGlyT : 1892 |} 1934 bp {|}||||||||||||||||||||||||| l}++ ++{y}LysLeuTyrTrpSerAspGlnGlyT 32187 : G}gt..........................ag{G}AAATTGTACTGGTCAGACCAAGGAA : 30227 1893 : hrAspSerGlyValProAlaLysIleAlaSerAlaAsnMetAspGlyThrSerValLysT : 1912 ||||||||||||||||||||||||||||||||||||||||||||||||||||| !:!!| hrAspSerGlyValProAlaLysIleAlaSerAlaAsnMetAspGlyThrSerProGluT 30226 : CTGACAGTGGCGTTCCTGCTAAGATTGCAAGTGCTAACATGGATGGCACATCTCCAGAAA : 30167 1913 : hrLeuPheThrGlyAsnLeuGluHisLeuGluCysValThrLeuAspIleGluGluGlnL : 1932 ||||||||||||||||||||||||||||||||! !:!!|||||||||||||||||||||| hrLeuPheThrGlyAsnLeuGluHisLeuGluPheIleThrLeuAspIleGluGluGlnL 30166 : CTCTCTTCACTGGGAACCTTGAACACCTGGAGTTTATTACCCTTGATATCGAGGAGCAGA : 30107 1933 : ysLeuTyrTrpAlaValThrGlyArgGlyVal >>>> Target Intron 26 >>>> : 1943 ||||||||||||||||||||.!!||||||||| 2089 bp ysLeuTyrTrpAlaValThrSerArgGlyVal++ 30106 : AACTCTACTGGGCAGTCACCAGCAGGGGAGTGgt.......................... : 30072 1944 : IleGluArgGlyAsnValAspGlyThrAspArgMetIleLeuValHisGlnLeuSerH : 1962 ||||||!!!|||!:!||||||||||||..!|||||| !||||||:!!!::||||||| ++IleGluSerGlySerValAspGlyThrSerArgMetAlaLeuValAsnArgLeuSerH 30071 : agATTGAAAGTGGCAGTGTGGATGGTACAAGTCGAATGGCCCTGGTGAACCGCCTTTCCC : 27928 1963 : isProTrpGlyIleAlaValHisAspSerPheLeuTyrTyrThrAspGluGlnTyrGluV : 1982 ||||||||||||||||||||:!!! !||||||||||||||||||||||||!!.||||||! isProTrpGlyIleAlaValTyrGlySerPheLeuTyrTyrThrAspGluHisTyrGluA 27927 : ACCCCTGGGGAATTGCCGTCTATGGTTCCTTCCTTTATTACACTGATGAACACTATGAGG : 27868 1983 : alIleGluArgValAspLysAlaThrGlyAlaAsnLysIleValLeuArgAspAsnValP : 2002 .!||||||||||||||||||||||||||||||||||||:!:|||||||||||||||:!!| laIleGluArgValAspLysAlaThrGlyAlaAsnLysValValLeuArgAspAsnIleP 27867 : CCATTGAACGGGTTGACAAGGCCACCGGGGCCAATAAAGTGGTCTTGAGAGATAATATCC : 27808 2003 : roAsnLeuArgGlyLeuGlnValTyrHisArgArg{A} >>>> Target Intron 2 : 2014 |||||||||||||||||!:!||||||:!!||||||{|} 1080 bp roAsnLeuArgGlyLeuArgValTyrTyrArgArg{A}++ 27807 : CAAACCTAAGGGGACTTCGAGTTTATTACAGACGT{A}gt.................... : 27769 2015 : 7 >>>> {sn}AlaAlaGluSerSerAsnGlyCysSerAsnAsnMetAsnAlaCysGln : 2030 {||}:!!! !:!!||||||||||||||||||||||||:!!|||||||||||| ++{sn}SerAspLysSerSerAsnGlyCysSerAsnAsnValAsnAlaCysGln 27768 : ......ag{aC}TCTGACAAATCCTCAAATGGCTGTAGCAACAATGTGAATGCCTGTCAG : 26644 2031 : GlnIleCysLeuProValProGlyGlyLeuPheSerCysAlaCysAlaThrGlyPheLys : 2050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnIleCysLeuProValProGlyGlyLeuPheSerCysAlaCysAlaThrGlyPheLys 26643 : CAGATCTGCCTGCCTGTGCCAGGAGGACTGTTCTCATGCGCCTGTGCCACTGGATTTAAA : 26584 2051 : LeuAsnProAspAsnArgSerCysSerProTyrAsnSerPheIleValValSerMetLeu : 2070 ||||||! !|||||| !!!!|||||||||||||||||||||:!!||||||||||||||| LeuAsnHisAspAsnLeuThrCysSerProTyrAsnSerPheLeuValValSerMetLeu 26583 : CTCAATCATGATAATTTGACCTGCTCTCCATATAACTCCTTCCTTGTTGTTTCCATGCTG : 26524 2071 : SerAlaIleArgGlyPheSerLeuGluLeuSerAspHisSerGluThrMetValProVal : 2090 ||||||||||||||||||||||||||||||||||||||||||!!:.!!|||||||||||| SerAlaIleArgGlyPheSerLeuGluLeuSerAspHisSerAspAlaMetValProVal 26523 : TCTGCAATCAGAGGCTTTAGCTTGGAATTGTCAGATCATTCAGATGCCATGGTGCCAGTG : 26464 2091 : AlaGlyGln{G} >>>> Target Intron 28 >>>> {ly}ArgAsnAlaLeuHi : 2099 |||||||||{|} 2257 bp {||}||||||!.!||||| AlaGlyGln{G}++ ++{ly}ArgAsnValLeuHi 26463 : GCAGGTCAA{G}gt..........................ag{GA}CGAAATGTACTGCA : 24180 2100 : sValAspValAspValSerSerGlyPheIleTyrTrpCysAspPheSerSerSerValAl : 2119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ! sValAspValAspValSerSerGlyPheIleTyrTrpCysAspPheSerSerSerValPr 24179 : TGTGGATGTTGATGTATCTTCTGGCTTTATTTATTGGTGTGATTTTAGCAGCTCTGTGCC : 24120 2120 : aSerAspAsnAlaIleArgArgIleLysProAspGlySerSerLeuMetAsnIleValTh : 2139 !|||! !|||:!!|||||||||||||||||||||||||||:!!!!!! ||||||||||| oSerGlyAsnSerIleArgArgIleLysProAspGlySerAlaPheThrAsnIleValTh 24119 : ATCTGGTAACTCAATTCGTAGAATCAAACCAGATGGGTCTGCTTTTACAAATATTGTTAC : 24060 2140 : rHisGlyIleGlyGluAsnGlyValArgGlyIleAlaValAspTrpValAla{G} >>> : 2157 |:!!|||||||||:!!|||||||||||||||:!!||||||||||||||||||{!} rTyrGlyIleGlyGlnAsnGlyValArgGlyValAlaValAspTrpValAla{G}++ 24059 : ATATGGGATTGGACAAAATGGAGTCCGGGGTGTTGCAGTGGATTGGGTAGCA{G}gt... : 24003 2158 : > Target Intron 29 >>>> {ly}AsnLeuTyrPheThrAsnAlaPheValSerG : 2168 2186 bp { !}||||||||||||||||||||||||||||||| ++{lu}AsnLeuTyrPheThrAsnAlaPheValSerG 24002 : .......................ag{aa}aatctttattttaccaATGCTTTTGTGTCTG : 21787 2169 : luThrLeuIleGluValLeuArgIleAsnThrThrTyrArgArgValLeuLeuLysValT : 2188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luThrLeuIleGluValLeuArgIleAsnThrThrTyrArgArgValLeuLeuLysValT 21786 : AAACACTGATAGAAGTTCTGCGGATCAATACCACCTACCGTCGTGTTCTCCTTAAAGTCA : 21727 2189 : hrValAspMetProArgHisIleValValAspProLysAsnArgTyrLeuPheTrpAlaA : 2208 ||! !|||||||||||| !!||||||||||||||||||||||||||||||||||||.!!| hrGluAspMetProArgAspIleValValAspProLysAsnArgTyrLeuPheTrpThrA 21726 : CAGAGGATATGCCCAGGGATATTGTTGTAGATCCTAAGAACAGATACCTCTTCTGGACTG : 21667 2209 : spTyrGlyGlnArgProLysIleGluArgSerPheLeuAspCysThrAsnArgThrValL : 2228 |||||||||||! !|||||||||||||||||||||||||||||||||||||||||||||| spTyrGlyGlnThrProLysIleGluArgSerPheLeuAspCysThrAsnArgThrValL 21666 : ACTATGGGCAAACTCCCAAAATAGAACGCTCTTTTCTTGACTGTACCAATCGAACTGTGC : 21607 2229 : euValSerGluGlyIleValThrProArgGlyLeuAlaValAspArgSerAspGlyTyrV : 2248 ||||||||||| !|||:!!:!!||||||.!!|||||||||||| !|||..!||||||| euValSerGluTyrIleIleSerProArgSerLeuAlaValAspTyrSerSerGlyTyrV 21606 : TTGTATCAGAGTACATTATCTCACCACGGAGCTTGGCAGTGGACTATAGCAGTGGTTACG : 21547 2249 : alTyrTrpValAspAspSerLeuAspIleIleAlaArgIleArgIleAsnGlyGluAsnS : 2268 |||||||||||||||||! !||||||:!!||||||||||||||||||.!.|||:!!.!.| alTyrTrpValAspAspTyrLeuAspLeuIleAlaArgIleArgIleGluGlyLysGluS 21546 : TTTATTGGGTTGATGACTATTTAGATTTAATTGCAAGGATCCGTATTGAGGGAAAGGAAT : 21487 2269 : erGluValIleArgTyrGlySerArgTyrProThrProTyrGlyIleThrValPheGluA : 2288 ||||||||||||||!:!||||||||||||||||||||||||!.!||||||||||||! !| erGluValIleArgPheGlySerArgTyrProThrProTyrAlaIleThrValPheGlyA 21486 : CTGAAGTGATACGTTTTGGCAGTCGTTACCCAACTCCTTATGCCATCACTGTTTTTGGAA : 21427 2289 : snSerIleIleTrpValAspArgAsnLeuLysLysIlePheGlnAlaSerLysGluProG : 2308 ||||||||||||||!..||||||||||||||||||||||||||||||||||||||||||! snSerIleIleTrpAlaAspArgAsnLeuLysLysIlePheGlnAlaSerLysGluProG 21426 : ATTCTATCATATGGGCagacaggaatttaaaaaaaatcttccaagcTAGCAAGGAACCAG : 21367 2309 : luAsnThrGluProProThrValIleArgAspAsnIleAsnTrpLeuArgAspValThrI : 2328 !!.!|||||| !!|||! !|||!!:|||||||||||||||||||||||||||||||||| lyThrThrGluThrProArgValMetArgAspAsnIleAsnTrpLeuArgAspValThrI 21366 : GGACCACAGAGACACCAAGAGTGATGCGGGACAATATCAATTGGCTAAGAGATGTGACAA : 21307 2329 : lePheAspLysGlnValGlnProArgSerProAlaGluValAsnAsnAsnProCysLeuG : 2348 ||||||||:!!!!...!||||||||||||||||||||||||:!!:!!||||||||||||| lePheAspGlnHisThrGlnProArgSerProAlaGluValAspAspAsnProCysLeuG 21306 : TCTTTGACCAGCATACCCAGCCCCGGTCACCAGCAGAGGTTGATGACAACCCTTGCTTGG : 21247 2349 : luAsnAsnGlyGlyCysSerHisLeuCysPheAlaLeuProGlyLeuHisThrProLysC : 2368 ||||||||||||||||||||||||||||||||||||||||| !!! !||||||||||||| luAsnAsnGlyGlyCysSerHisLeuCysPheAlaLeuProArgSerHisThrProLysC 21246 : AAAATAATGGTGGATGCTCCCATCTCTGCTTTGCTCTGCCCAGATCACACACCCCAAAAT : 21187 2369 : ysAspCysAlaPheGlyThrLeuGlnSerAspGlyLysAsnCysAlaIleSerThrGluA : 2388 ||! !||||||||||||||||||:!!..!|||||||||!:!||||||||||||! !|||| ysGlyCysAlaPheGlyThrLeuGluAspAspGlyLysSerCysAlaIleSerIleGluA 21186 : GCGGCTGTGCCTTTGGGACCCTGGAAGATGATGGAAAAAGCTGTGCCATTTCGATAgaaa : 21127 2389 : snPheLeuIlePheAlaLeuSerAsnSerLeuArgSerLeuHisLeuAspProGluAsnH : 2408 ||||||||||||||...|||..!|||||||||||||||||||||||||||||||||:!!| snPheLeuIlePheThrLeuAspAsnSerLeuArgSerLeuHisLeuAspProGluAspH 21126 : atttcctcatctttacatTGGATAATTCCTTGAGAAGCTTGCACTTGGACCCTGAAGACC : 21067 2409 : isSerProProPheGlnThrIleAsnValGluArgThrValMetSerLeuAspTyrAspS : 2428 ||!!!! !|||||||||.!!|||!:!||||||||| !!.!|||:!!|||||||||!!:| isThrLeuProPheGlnAlaIleSerValGluArgTyrAlaMetAlaLeuAspTyrGluS 21066 : ATACCCTACCTTTCCAAGCGATAAGTGTGGAAAGATATGCCATGGCCCTGGACTATGAGA : 21007 2429 : erValSerAspArgIleTyrPheThrGlnAsnLeuAlaSerGlyValGlyGlnIleSerT : 2448 ||:!!.!!:!!|||||||||||||||||| !|||! !|||||| !||||||||||||| erIleGlyAsnArgIleTyrPheThrGlnLeuLeuAspSerGlyHisGlyGlnIleSerT 21006 : GCATAGGTAACAGAATCTACTTTACACAACTTTTAGACTCTGGACATGGCCAGATTTCCT : 20947 2449 : yrAlaThrLeuSerSerGlyIleHisThrProThrValIleAlaSer{G} >>>> Tar : 2464 || ! !|||!:!|||! !!!: !:!! !!|||||||||!.!|||{!} yrIleAspLeuAsnSerGluMetSerSerThrThrValIleValSer{A}++ 20946 : ACATCGACCTGAATTCAGAGATGAGTTCTACCACTGTCATTGTTTCA{G}gt........ : 20896 2465 : get Intron 30 >>>> {ly}IleGlyThrAlaAspGlyIleAlaPheAspTrpIle : 2476 177 bp {.!}:!!|||.!!||||||||||||||||||||||||||| ++{la}ValGlyAlaAlaAspGlyIleAlaPheAspTrpIle 20895 : ..................ag{CT}GTAGGGGCTGCTGATGGCATTGCCTTTGACTGGATC : 20686 2477 : ThrArgArgIleTyrTyrSerAspTyrLeuAsnGlnMetIleAsnSerMetAlaGluAsp : 2496 !.!|||||||||||||||||||||!:!:!!||||||! ||||||||||||||||||||| AsnArgArgIleTyrTyrSerAspPheIleAsnGlnThrIleAsnSerMetAlaGluAsp 20685 : AATAGAAGAATTTATTACAGTGACTTCATCAACCAAACAATTAACTCCATGGCTGAGGAT : 20626 2497 : GlySerAsnArgThrValIleAlaArgValProLysProArgAlaIleValLeuAspPro : 2516 ||||||:!!!.!||||||:!!|||!.!||| !!!!.|||||||||||||||||||||||| GlySerAspHisThrValLeuAlaHisValSerAsnProArgAlaIleValLeuAspPro 20625 : GGGTCAGATCACACTGTATTAGCTCATGTTTCAAACCCAAGAGCGATTGTGTTAGATCCT : 20566 2517 : CysGln{Gl} >>>> Target Intron 31 >>>> {y}TyrLeuTyrTrpAlaAs : 2525 ||||||{||} 377 bp {|}|||:!!||||||.!!|| CysGln{Gl}++ ++{y}TyrMetTyrTrpThrAs 20565 : TGCCAA{GG}gt..........................ag{G}TACATGTACTGGACCGA : 20162 2526 : pTrpAspThrHisAlaLysIleGluArgAlaThrLeuGlyGlyAsnPheArgValProIl : 2545 ||||..!|||:!!|||||||||||||||||||||:!!|||||||||||||||!.!||||| pTrpSerThrAsnAlaLysIleGluArgAlaThrMetGlyGlyAsnPheArgAlaProIl 20161 : TTGGAGTACTAATGCCAAAATTGAGAGAGCCACAATGGGAGGAAACTTCCGGGCACCCAT : 20102 2546 : eValAsnSerSerLeuValMetProSerGlyLeuThrLeuAspTyrGluGluAspLeuLe : 2565 |||||||.!!||||||||| !|||||||||||||||||||||:!!:!!||||||!!!|| eValAsnGlySerLeuValTrpProSerGlyLeuThrLeuAspHisGlnGluAspPheLe 20101 : TGTGAATGGCAGCCTGGTCTGGCCCAGTGGGCTCACTCTGGACCATCAGGAAGACTTTCT : 20042 2566 : uTyrTrpValAspAlaSer{Le} >>>> Target Intron 32 >>>> {u}GlnA : 2574 |||||||..!|||||||||{:!} 1153 bp {!}|||! uTyrTrpThrAspAlaSer{Me}++ ++{t}GlnL 20041 : CTACTGGACAGATGCCAGC{AT}gt..........................ag{G}CAGA : 18862 2575 : rgIleGluArgSerThrLeuThrGlyValAspArgGluValIleValAsnAlaAlaValH : 2594 :!|||||||||!!!||||||! !|||..!!!:|||||||||||||||!:!.!!.!! !!| ysIleGluArgCysThrLeuMetGlyThrGluArgGluValIleValSerThrThrPheH 18861 : AGATTGAACGCTGCACTCTAATGGGCACAGAGCGTGAGGTCATTGTCAGCACTACCTTTC : 18802 2595 : isAlaPheGlyLeuThrLeuTyrGlyGlnTyrIleTyrTrpThrAspLeuTyrThrGlnA : 2614 || !!|||! !||||||||||||! !|||||||||||||||||||||! !||||||:!!! isProPheAspLeuThrLeuTyrAspGlnTyrIleTyrTrpThrAspTrpTyrThrLysL 18801 : ATCCATTTGACTTGACTCTCTATGACCAGTATATTTACTGGACTGACTGGTACACAAAAA : 18742 2615 : rgIleTyrArgAlaAsnLysTyrAspGlySerGlyGlnIleAlaMetThrThrAsnLeuL : 2634 :!||||||||||||||||||||||||||||||||||||!!:||||||||| !!!:!!!!! ysIleTyrArgAlaAsnLysTyrAspGlySerGlyGlnMetAlaMetThrProSerPheS 18741 : AAATTTACCGAGCTAACAAATATGATGGGTCAGGTCAAATGGCAATGACTCCAAGTTTTT : 18682 2635 : euSerGlnProArgGlyIleAsnThrValValLysAsnGlnLysGlnGlnCysAsnAsnP : 2654 !|||!:!|||!:!|||||| !..!|||||||||:!!|||:!!|||||||||!:!|||| erSerArgProLysGlyIleCysValValValLysAspGlnGlnGlnGlnCysSerAsnP 18681 : CCTCCCGGCCTAAGGGTATCTGCGTTGTTGTGAAGGACCAGCAACAGCAGTGCAGCAATC : 18622 2655 : roCysGluGlnPheAsnGlyGlyCysSerHisIleCysAlaPro{G} >>>> Target : 2669 |||||.!.||||||||||||||||||||||||||||||.!! !!{|} 9 roCysAsnGlnPheAsnGlyGlyCysSerHisIleCysThrAla{G}++ 18621 : CTTGCAATCAGTTTAATGGTGGATGCAGCCATATTTGTACAGCA{G}gt........... : 18574 2670 : Intron 33 >>>> {ly}ProAsnGlyAlaGluCysGlnCysProHisGluGlyAsn : 2682 59 bp {||}|||||||||||||||||||||||||||||| !|||:!! ++{ly}ProAsnGlyAlaGluCysGlnCysProHisProGlyHis 18573 : ...............ag{GT}CCAAATGGTGCTGAGTGCCAGTGTCCCCATCCAGGCCAC : 17579 2683 : TrpTyrLeuAlaAsnAsnArgLysHisCysIleValAspAsnGlyGluArgCysGlyAla : 2702 ||||||||||||||||||!.!||||||||||||||||||!:!||| !||||||! !::! TrpTyrLeuAlaAsnAsnAsnLysHisCysIleValAspSerGlyThrArgCysAspSer 17578 : TGGTATCTGGCCAACAACAATAAGCACTGCATTGTGGACAGTGGAACACGGTGTGATAGT : 17519 2703 : SerSerPheThrCysSerAsnGlyArgCysIleSerGluGluTrpLysCysAspAsnAsp : 2722 |||!.!|||||||||! !!:!|||!.!||||||||||||:!!! ! !||||||:!!:!! SerLysPheThrCysPheSerGlyHisCysIleSerGluGlnLeuLeuCysAspHisAsn 17518 : TCCAAATTCACCTGCTTCAGCGGGCACTGCATCTCGGAGCAGTTGCTGTGTGACCATAAC : 17459 2723 : AsnAspCysGlyAspGlySerAspGluMetGluSerValCys{A} >>>> Target I : 2737 :!!||||||||||||||||||||||||:!: !! !||||||{|} 923 AspAspCysGlyAspGlySerAspGluLeuThrIleValCys{A}++ 17458 : GATGACTGTGGTGATGGCAGTGATGAGCTTACAATTGTCTGT{G}gt............. : 17411 2738 : ntron 34 >>>> {la}LeuHisThrCysSerProThrAlaPheThrCysAlaAsnGl : 2751 bp {||}||||||||||||..! !!||||||||||||||||||:!!|| ++{la}LeuHisThrCysGlnSerThrAlaPheThrCysAlaAspGl 17410 : .............ag{CG}CTTCACACCTGCCAGTCGACTGCCTTCACCTGTGCCGATGG : 16449 2752 : yArgCysValGlnTyrSerTyrArgCysAspTyrTyrAsnAspCysGlyAspGlySerAs : 2771 |||||||:!!! !||| !!||||||||||||:!!||||||||||||! !||||||||||| yArgCysIleProTyrArgTyrArgCysAspHisTyrAsnAspCysValAspGlySerAs 16448 : GCGATGCATCCCGTATCGTTACCGCTGTGATCACTATAACGACTGTGTTGATGGTAGCGA : 16389 2772 : pGluAlaGlyCysLeuPheArgAspCysAsnAlaThrThrGluPheMetCysAsnAsnAr : 2791 ||||||||||||||||||||||!!:||||||||||||.!!||||||! |||..!||||| pGluAlaGlyCysLeuPheArgGluCysAsnAlaThrAlaGluPheThrCysGlyAsnAr 16388 : CGAGGCAGGGTGCCTGTTCAGGGAGTGCAACGCCACCGCGGAGTTTACCTGCGGTAACAG : 16329 2792 : gArgCysIleProArgGluPheIleCysAsnGlyValAspAsnCysHisAspAsnAsnTh : 2811 |!:!|||||||||! !.!..!!:!!|||:!!||||||:!!|||||||||||||||||||| gLysCysIleProLeuHisLeuValCysAspGlyValAsnAsnCysHisAspAsnAsnTh 16328 : AAAGTGCATCCCTCTTCACCTTGTCTGCGACGGTGTAAACAACTGCCATGATAATAATAC : 16269 2812 : rSerAspGluLysAsnCys{P} >>>> Target Intron 35 >>>> {ro}AspA : 2820 |||||||||||||||||||{|} 4772 bp {||}|||| rSerAspGluLysAsnCys{P}++ ++{ro}AspA 16268 : TTCAGATGAGAAAAACTGC{C}gt..........................ag{CT}GATC : 11470 2821 : rgThrCysGlnSerGlyTyrThrLysCysHisAsnSerAsnIleCysIleProArgValT : 2840 ||||||||!!. !!||| ! ! !||||||! !.!!!!||||||||||||! !|||:!!| rgThrCysHisProGlyGlnIleLysCysLeuThrThrAsnIleCysIleHisArgLeuT 11469 : GCACTTGCCACCCTGGACAGATCAAATGTCTGACTACAAATATTTGTATTCATCGTCTTT : 11410 2841 : yrLeuCysAspGlyAspAsnAspCysGlyAspAsnSerAspGluAsnProThrTyrCys{ : 2860 ||||||||||||||||||||||||||||||||!..|||||||||||||||! !!:!|||{ yrLeuCysAspGlyAspAsnAspCysGlyAspThrSerAspGluAsnProIlePheCys{ 11409 : ACTTGTGTGATGGAGACAATGACTGTGGAGATACGAGCGATGAAAACCCCATTTTCTGC{ : 11350 2861 : T} >>>> Target Intron 36 >>>> {hr}ThrHisThrCysSerSerSerGlu : 2868 :} 1347 bp {!!}|||!!. !!||||||..!|||||| S}++ ++{er}ThrGlnProCysSerAspSerGlu 11349 : T}gt..........................ag{cC}ACTCAACCATGCAGTGACAGTGAG : 9979 2869 : PheGlnCysAlaSerGlyArgCysIleProGlnHisTrpTyrCysAspGlnGluThrAsp : 2888 |||!!.|||.!!||||||||||||||||||:!!...|||||||||||||||!!:! !||| PheHisCysThrSerGlyArgCysIleProGluArgTrpTyrCysAspGlnAspArgAsp 9978 : TTCCACTGCACATCTGGACGCTGTATTCCTGAAAGATGGTACTGTGATCAAGACAGAGAT : 9919 2889 : CysPheAspAlaSerAspGluProAlaSerCys{G} >>>> Target Intron 37 : 2900 ||| !|||!.!|||||||||||| !!!!|||{!} 3434 bp CysAspAspGlySerAspGluProAsnThrCys{V}++ 9918 : TGTGATGATGGCTCTGATGAACCTAACACTTGT{G}gt...................... : 9880 2901 : >>>> {ly}HisSerGluArgThrCysLeuAlaAspGluPheLysCysAspGlyGlyAr : 2917 { !}:!! !!!:! ! !||||||::!|||||||||:!!|||||| !||||| ++{al}TyrHisAspProGluCysLeuSerAspGluPheGlnCysAspThrGlyAr 9879 : ....ag{tg}TATCATGATCCAGAATGCTTAAGTGATGAGTTCCAGTGTGACACTGGGCG : 6398 2918 : gCysIleProSerGluTrpIleCysAspGlyAspAsnAspCysGlyAspMetSerAspGl : 2937 |||||||! !!.!! !|||||||||||||||||||||||||||||||||||||||||||| gCysIleGlnLysAlaTrpIleCysAspGlyAspAsnAspCysGlyAspMetSerAspGl 6397 : GTGCATCCAAAAAGCATGGATCTGTGATGGTGATAATGACTGTGGGGACATGAGTGATGA : 6338 2938 : uAspLysArgHisGlnCys{G} >>>> Target Intron 38 >>>> {ln}AsnG : 2946 ||||:!!||||||!!.|||{:} 1416 bp {!!}!:!! uAspGluArgHisHisCys{G}++ ++{lu}SerH 6337 : GGATGAAAGGCACCACTGT{G}gt..........................ag{AG}AGTC : 4895 2947 : lnAsnCysSerAspSerGluPheLeuCysValAsnAspArgProProAspArgArgCysI : 2966 !.!.!||||||..!! !||||||!!!|||||||||..! !||||||..!|||||||||| isThrCysSerSerLeuGluPhePheCysValAsnSerAlaProProSerArgArgCysI 4894 : ACACCTGCTCAAGTTTGGAATTTTTCTGTGTAAACAGCGCGCCTCCATCCAGGAGGTGCA : 4835 2967 : leProGlnSerTrpValCysAspGlyAspValAspCysThrAspGlyTyrAspGluAsnG : 2986 |||||||||||||||||||||||||||||!.!||||||.!!||||||||||||||| !!| leProGlnSerTrpValCysAspGlyAspAlaAspCysAlaAspGlyTyrAspGluTyrG 4834 : TCCCCCAATCTTGGGTCTGTGATGGTGATGCAGATTGTGCCGATGGCTATGATGAGTATC : 4775 2987 : lnAsnCysThrArgArgThrCysSerGluAsnGluPheThrCysGlyTyrGlyLeuCysI : 3006 |||||||||||||||||:!!||||||||||||!!:|||||||||..! !!|||||||||: lnAsnCysThrArgArgSerCysSerGluAsnAspPheThrCysAsnAsnGlyLeuCysV 4774 : AAAATTGCACCAGGAGATCTTGCTCTGAAAATGATTTCACCTGTAATAATGGACTGTGTG : 4715 3007 : leProLysIlePheArg : 3011 !!|||::: !:!||| alProArgTrpTyrArg 4714 : TCCCACGCTGGTACAGG : 4698 vulgar: SPP00002932_2.0 346 3011 . JSZB01003496.1:subseq(0,100000) 96282 4697 - 11350 M 44 132 S 0 1 5 0 2 I 0 1583 3 0 2 S 1 2 M 56 168 5 0 2 I 0 1649 3 0 2 M 74 222 S 0 2 5 0 2 I 0 1031 3 0 2 S 1 1 M 68 204 S 0 2 5 0 2 I 0 2184 3 0 2 S 1 1 M 67 201 S 0 1 5 0 2 I 0 2347 3 0 2 S 1 2 M 46 138 S 0 1 5 0 2 I 0 4254 3 0 2 S 1 2 M 67 201 S 0 1 5 0 2 I 0 8921 3 0 2 S 1 2 M 63 189 S 0 2 5 0 2 I 0 2258 3 0 2 S 1 1 M 41 123 S 0 2 5 0 2 I 0 877 3 0 2 S 1 1 M 43 129 S 0 1 5 0 2 I 0 2744 3 0 2 S 1 2 M 45 135 S 0 1 5 0 2 I 0 368 3 0 2 S 1 2 M 93 279 S 0 1 5 0 2 I 0 1145 3 0 2 S 1 2 M 12 36 G 0 3 M 67 201 S 0 1 5 0 2 I 0 1098 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 99 3 0 2 S 1 2 M 38 114 S 0 1 5 0 2 I 0 1603 3 0 2 S 1 2 M 125 375 S 0 1 5 0 2 I 0 1141 3 0 2 S 1 2 M 82 246 S 0 1 5 0 2 I 0 1220 3 0 2 S 1 2 M 70 210 5 0 2 I 0 793 3 0 2 M 61 183 S 0 2 5 0 2 I 0 8563 3 0 2 S 1 1 M 76 228 5 0 2 I 0 946 3 0 2 M 59 177 S 0 1 5 0 2 I 0 4622 3 0 2 S 1 2 M 42 126 S 0 1 5 0 2 I 0 4770 3 0 2 S 1 2 M 55 165 5 0 2 I 0 927 3 0 2 M 48 144 5 0 2 I 0 4244 3 0 2 M 36 108 S 0 2 5 0 2 I 0 1930 3 0 2 S 1 1 M 59 177 5 0 2 I 0 2085 3 0 2 M 71 213 S 0 1 5 0 2 I 0 1076 3 0 2 S 1 2 M 79 237 S 0 1 5 0 2 I 0 2253 3 0 2 S 1 2 M 62 186 S 0 1 5 0 2 I 0 2182 3 0 2 S 1 2 M 306 918 S 0 1 5 0 2 I 0 173 3 0 2 S 1 2 M 54 162 S 0 2 5 0 2 I 0 373 3 0 2 S 1 1 M 52 156 S 0 2 5 0 2 I 0 1149 3 0 2 S 1 1 M 96 288 S 0 1 5 0 2 I 0 955 3 0 2 S 1 2 M 67 201 S 0 1 5 0 2 I 0 919 3 0 2 S 1 2 M 80 240 S 0 1 5 0 2 I 0 4768 3 0 2 S 1 2 M 41 123 S 0 1 5 0 2 I 0 1343 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 3430 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 1412 3 0 2 S 1 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 4698 96282 11350 - . gene_id 1 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 96150 96282 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 96150 96282 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 96148 96149 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 94563 96149 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 94563 94564 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 94393 94562 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 94393 94562 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 94391 94392 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 92740 94392 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 92740 92741 . - . intron_id 1 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 92516 92739 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 92516 92739 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 92514 92515 . - . intron_id 3 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 91481 92515 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 91481 91482 . - . intron_id 2 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 91274 91480 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 91274 91480 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 91272 91273 . - . intron_id 4 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 89086 91273 . - . intron_id 4 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 89086 89087 . - . intron_id 3 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 88883 89085 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 88883 89085 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 88881 88882 . - . intron_id 5 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 86532 88882 . - . intron_id 5 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 86532 86533 . - . intron_id 4 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 86391 86531 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 86391 86531 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 86389 86390 . - . intron_id 6 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 82133 86390 . - . intron_id 6 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 82133 82134 . - . intron_id 5 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 81929 82132 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 81929 82132 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 81927 81928 . - . intron_id 7 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 73004 81928 . - . intron_id 7 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 73004 73005 . - . intron_id 6 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 72811 73003 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 72811 73003 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 72809 72810 . - . intron_id 8 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 70549 72810 . - . intron_id 8 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 70549 70550 . - . intron_id 7 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 70423 70548 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 70423 70548 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 70421 70422 . - . intron_id 9 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 69542 70422 . - . intron_id 9 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 69542 69543 . - . intron_id 8 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 69411 69541 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 69411 69541 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 69409 69410 . - . intron_id 10 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 66663 69410 . - . intron_id 10 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 66663 66664 . - . intron_id 9 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 66525 66662 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 66525 66662 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 66523 66524 . - . intron_id 11 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 66153 66524 . - . intron_id 11 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 66153 66154 . - . intron_id 10 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 65871 66152 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 65871 66152 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 65869 65870 . - . intron_id 12 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 64722 65870 . - . intron_id 12 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 64722 64723 . - . intron_id 11 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64721 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64721 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 13 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 63377 64478 . - . intron_id 13 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 63377 63378 . - . intron_id 12 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 63257 63376 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 63257 63376 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 63255 63256 . - . intron_id 14 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 63154 63256 . - . intron_id 14 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 63154 63155 . - . intron_id 13 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 63037 63153 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 63037 63153 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 63035 63036 . - . intron_id 15 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 61430 63036 . - . intron_id 15 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 61430 61431 . - . intron_id 14 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 61052 61429 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 61052 61429 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 61050 61051 . - . intron_id 16 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 59907 61051 . - . intron_id 16 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 59907 59908 . - . intron_id 15 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 59658 59906 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 59658 59906 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 59656 59657 . - . intron_id 17 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 58434 59657 . - . intron_id 17 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 58434 58435 . - . intron_id 16 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 58222 58433 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 58222 58433 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 58220 58221 . - . intron_id 18 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 57425 58221 . - . intron_id 18 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 57425 57426 . - . intron_id 17 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 57240 57424 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 57240 57424 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 57238 57239 . - . intron_id 19 ; splice_site "gt" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 48673 57239 . - . intron_id 19 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 48673 48674 . - . intron_id 18 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 48444 48672 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 48444 48672 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 48442 48443 . - . intron_id 20 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 47494 48443 . - . intron_id 20 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 47494 47495 . - . intron_id 19 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 47316 47493 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 47316 47493 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 47314 47315 . - . intron_id 21 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 42690 47315 . - . intron_id 21 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 42690 42691 . - . intron_id 20 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 42561 42689 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 42561 42689 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 42559 42560 . - . intron_id 22 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 37787 42560 . - . intron_id 22 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 37787 37788 . - . intron_id 21 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 37620 37786 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 37620 37786 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 37618 37619 . - . intron_id 23 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 36689 37619 . - . intron_id 23 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 36689 36690 . - . intron_id 22 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 36545 36688 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 36545 36688 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 36543 36544 . - . intron_id 24 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 32297 36544 . - . intron_id 24 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 32297 32298 . - . intron_id 23 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 32187 32296 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 32187 32296 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 32185 32186 . - . intron_id 25 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 30253 32186 . - . intron_id 25 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 30253 30254 . - . intron_id 24 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 30075 30252 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 30075 30252 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 30073 30074 . - . intron_id 26 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 27986 30074 . - . intron_id 26 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 27986 27987 . - . intron_id 25 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 27772 27985 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 27772 27985 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 27770 27771 . - . intron_id 27 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 26692 27771 . - . intron_id 27 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 26692 26693 . - . intron_id 26 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 26452 26691 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 26452 26691 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 26450 26451 . - . intron_id 28 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 24195 26451 . - . intron_id 28 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 24195 24196 . - . intron_id 27 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 24006 24194 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 24006 24194 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 24004 24005 . - . intron_id 29 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 21820 24005 . - . intron_id 29 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 21820 21821 . - . intron_id 28 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 20899 21819 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 20899 21819 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 20897 20898 . - . intron_id 30 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 20722 20898 . - . intron_id 30 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 20722 20723 . - . intron_id 29 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 20556 20721 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 20556 20721 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 20554 20555 . - . intron_id 31 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 20179 20555 . - . intron_id 31 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 20179 20180 . - . intron_id 30 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 20020 20178 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 20020 20178 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 20018 20019 . - . intron_id 32 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 18867 20019 . - . intron_id 32 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 18867 18868 . - . intron_id 31 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 18577 18866 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 18577 18866 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 18575 18576 . - . intron_id 33 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 17618 18576 . - . intron_id 33 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 17618 17619 . - . intron_id 32 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 17414 17617 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 17414 17617 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 17412 17413 . - . intron_id 34 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16491 17413 . - . intron_id 34 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16491 16492 . - . intron_id 33 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16248 16490 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16248 16490 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 16246 16247 . - . intron_id 35 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 11476 16247 . - . intron_id 35 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 11476 11477 . - . intron_id 34 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 11350 11475 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 11350 11475 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 11348 11349 . - . intron_id 36 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 10003 11349 . - . intron_id 36 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 10003 10004 . - . intron_id 35 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 9883 10002 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 9883 10002 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 9881 9882 . - . intron_id 37 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 6449 9882 . - . intron_id 37 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 6449 6450 . - . intron_id 36 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 6317 6448 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 6317 6448 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 6315 6316 . - . intron_id 38 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 4901 6316 . - . intron_id 38 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 4901 4902 . - . intron_id 37 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 4698 4900 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 4698 4900 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 4698 96282 11350 - . alignment_id 1 ; Query SPP00002932_2.0 ; Align 96283 347 132 ; Align 94561 392 168 ; Align 92740 448 222 ; Align 91480 523 204 ; Align 89085 592 201 ; Align 86530 660 138 ; Align 82131 707 201 ; Align 73002 775 189 ; Align 70548 839 123 ; Align 69541 881 129 ; Align 66661 925 135 ; Align 66151 971 279 ; Align 64720 1065 36 ; Align 64681 1077 201 ; Align 63375 1145 117 ; Align 63152 1185 114 ; Align 61428 1224 375 ; Align 59905 1350 246 ; Align 58432 1433 210 ; Align 57425 1503 183 ; Align 48672 1565 228 ; Align 47494 1641 177 ; Align 42688 1701 126 ; Align 37785 1744 165 ; Align 36689 1799 144 ; Align 32297 1847 108 ; Align 30252 1884 177 ; Align 27986 1943 213 ; Align 26690 2015 237 ; Align 24193 2095 186 ; Align 21818 2158 918 ; Align 20720 2465 162 ; Align 20178 2520 156 ; Align 18866 2573 288 ; Align 17616 2670 201 ; Align 16489 2738 240 ; Align 11474 2819 123 ; Align 10001 2861 117 ; Align 6447 2901 129 ; Align 4899 2945 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 574 Query range: 3204 -> 3551 Target range: 58398 -> 9874 3205 : AsnArgTyrTyrLeuArgAsnLeuThrIleAspGlyTyrPheTyrSerLeuIleLeuGlu : 3224 |||!:! ! ! ! !|||:!!||| !.!.|||:!! ! !..!! !:!!:!!:!! AsnGlnIleValAlaAspAsnIleThrSerGlnGlyHisAsnValGlnSerLeuIleGln 58398 : AACCAAATTGTTGCTGACAATATCACTTCCCAGGGTCACAATGTCCAATCACTCATACAG : 58341 3225 : GlyLeuAspAsnValValAlaLeuAspPheAspArgValGluLysArgLeuTyrTrpIle : 3244 ..! !..!:!!:!!||||||:!!||||||||| !|||... |||:!!!:!||| ! AsnGlySerHisIleValAlaIleAspPheAspSerValSerGlyArgIlePheTrpSer 58340 : AATGGTTCTCACATCGTAGCTATTGACTTTGATTCTGTCAGCGGTCGCATCTTTTGGTCT : 58281 3245 : AspThrGlnArgGlnValIleGluArgMetPheLeuAsnLysThrAsnLysGluThr > : 3264 ||| ! !:! !||| !!!! !.!!! !||| !|||:!!!..:!!..! AspGlyThrGlnGlyLysIleTrpSerAlaLeuGlnAsnGlyThrAspSerLysVal++ 58280 : GATGGAACTCAGGGTAAAATCTGGAGTGCGCTTCAAAATGGAACAGACAGCAAAGTAgt. : 58219 3265 : >>> Target Intron 1 >>>> IleIleAsnHisArgLeuProAlaAlaGluSerL : 3275 797 bp |||:!!:!! ! !!:!! !! !.!!||||||: ++IleValAspSerGlyValThrMetThrGluSerI 58218 : ........................agATAGTTGACAGTGGTGTCACCATGACTGAAAGTA : 57391 3276 : euAlaValAspTrpValSerArgLysLeuTyrTrpLeuAspAlaArgLeuAspGlyLeuP : 3295 !!|||||||||||||||.!!||||||||||||||| !||| ! !|||!!: !:!! leAlaValAspTrpValGlyArgLysLeuTyrTrpThrAspTyrAlaLeuGluThrIleG 57390 : TTGCAGTAGATTGGGTAGGTCGCAAACTTTACTGGACAGACTATGCTCTGGAAACAATTG : 57331 3296 : heValSerAspLeuAsnGlyGlyHisArgArgMetLeuAlaGlnHisCysValAspAlaA : 3315 ||||||!!:|||:!!||| !!:!!|||! !:!!||| !... ! !||| ! luValSerGluLeuAspGlyArgTyrArgThrValLeuIleSerValAsnValThrAsnP 57330 : AAGTCTCTGAACTGGATGGGAGGTACCGGACTGTGCTGATTAGTGTCAATGTAACAAATC : 57271 3316 : snAsnThrPheCysPheAsp<->AsnPro{Ar} >>>> Target Intron 2 >>>> : 3324 !.. !.!....!!.||| !.. !{||} 8546 bp roArgGlyLeuAlaLeuAspProArgIle{Ar}++ 57270 : CAAGAGGACTAGCATTAGATCCTAGAATT{Ag}gt......................... : 57237 3325 : {g}GlyLeuAlaLeuHisProGlnTyrGlyTyrLeuTyrTrpAlaAspTrpGlyHisA : 3343 {|} !||| !! ! !! !... !! ! :!!!:!|||:!!|||||||||!.!! -+{g}***LeuLeuCysPheHisSerAspHisLeuMetPheTrpSerAspTrpGlyArgH 57236 : tg{G}TAACTACTTTGTTTTCACAGTGACCATCTGATGTTCTGGTCTGACTGGGGCCGTC : 48638 3344 : rgAlaTyrIleGlyArgValGlyMetAspGlyThrAsnLysSerValIleIleSerThrL : 3363 .! !!:!!|||! !|||!.!.!!|||||||||!:!.!.:::!!!||||||:!!..! !| isProHisIleGluArgAlaSerMetAspGlySerGluArgThrValIleValGlnAspL 48637 : ACCCTCATATCGAGCGAGCCAGCATGGATGGCAGTGAGCGCACTGTCATTGTCCAGGACA : 48578 3364 : ysLeuGluTrpProAsnGlyIleThrIleAspTyrThrAsnAspLeuLeuTyrTrpAlaA : 3383 ||:!! ! ||||||||||||:!!||||||||||||.!!||| |||:!!|||!:: !| ysIleTyrTrpProAsnGlyLeuThrIleAspTyrAlaAsnArgLeuIleTyrPheMetA 48577 : AGATTTACTGGCCCAATGGCTTAACTATTGACTATGCCAACAGACTGATTTACTTTATGG : 48518 3384 : spAlaHisLeuGlyTyrIleGluTyrSerAspLeuGluGlyHisHisArgHisThrValT : 3403 |||||:!!|||! !||||||!!:! !!!:!!! !!!:||||||||||||... !||| spAlaTyrLeuAspTyrIleAspLeuCysAsnTyrAspGlyHisHisArgArgGlnValI 48517 : ATGCCTACCTTGATTACATAGACTTGTGTAATTATGATGGACACCATCGGAGGCAGGTGA : 48458 3404 : yrAspGlyAlaLeu >>>> Target Intron 3 >>>> ProHisProPheAlaIl : 3413 ! !.!!! !||| 956 bp ! !||||||!:!|||:! leAlaSerAspLeu++ -+ArgHisProTyrAlaLe 48457 : TAGCCAGTGATTTGgt.........................tgCGGCATCCCTATGCCCT : 47472 3414 : eThrIlePheGluAspThrIleTyrTrpThrAspTrpAsnThrArgThrValGluLysGl : 3433 :|||:!!|||||||||:!!!!:||||||||||||!:: !|||!.! !||| !:!!!. uThrLeuPheGluAspSerMetTyrTrpThrAspTyrAlaThrHisArgValMetGlnAl 47471 : GACTCTCTTTGAGGATTCCATGTACTGGACTGACTATGCTACTCACCGTGTCATGCAAGC : 47412 3434 : yAsnLysTyrAspGlySerAsnArgGlnThrLeuValAsnThrThrHisArgProPheAs : 3453 !||||||!:: !!|||.!!|||!:!..!..!:!!:!! !!!.!..!|||!:!|||.!!! aAsnLysTrpHisGlyGlyAsnGlnSerValIleIleTyrAsnValHisGlnProLeuGl 47411 : CAACAAGTGGCACGGGGGAAACCAGTCAGTCATAATATATAATGTTCATCAGCCCCTTGG : 47352 3454 : pIleHisValTyrHisPro >>>> Target Intron 4 >>>> TyrArgGlnPro : 3463 ||| !!.! !|||||| 28685 bp !!!:!|||! ! yIleValAlaValHisPro++ ++AspGlnGlnGln 47351 : GATTGTTGCAGTTCATCCTgt.........................agGACCAGCAACAG : 18637 3464 : IleValSerAsnProCysGlyThrAsnAsnGlyGlyCysSerHisLeuCysLeuIle{L} : 3483 !||||||||||||..! ! !||||||||||||||||||:!!||| ! !{ } GlnCysSerAsnProCysAsnGlnPheAsnGlyGlyCysSerHisIleCysThrAla{G} 18636 : CAGTGCAGCAATCCTTGCAATCAGTTTAATGGTGGATGCAGCCATATTTGTACAGCA{G} : 18577 3484 : >>>> Target Intron 5 >>>> {ys}ProGlyGlyLysGlyPheThrCysGlu : 3492 959 bp { }|||..!||| !|||:!! ++ ++{ly}ProAsnGlyAla------GluCysGln 18576 : gt.........................ag{GT}CCAAATGGTGCT------GAGTGCCAG : 17597 3493 : CysProAspAspPheArgThrLeuGlnLeuSerGlySerThrTyrCysMet >>>> Ta : 3510 |||||| !! !!.! !! !! ! !!:!..!!:!! !:!!|||!!: CysProHisProGlyHisTrpTyrLeuAlaAsnAsnAsnLysHisCysIle++ 17596 : TGTCCCCATCCAGGCCACTGGTATCTGGCCAACAACAATAAGCACTGCATTgt....... : 17541 3511 : rget Intron 6 >>>> ProMet-----CysSerSerThrGlnPheLeuCysAlaAs : 3521 7541 bp |||:!:#####||||||..!!:!:!!|||! !|||.!!:: ++ProLeu#####CysSerAspSerGluPheHisCysThrSe 17540 : ..................agcCACTCAACCATGCAGTGACAGTGAGTTCCACTGCACATC : 9964 3522 : nAsnGluLysCysIleProIleTrpTrpLysCysAspGlyGlnLysAspCysSerAspGl : 3541 !... :::||||||||| ! ! ||| ! |||||| !.!.!:!||||||..!||||| rGly---ArgCysIleProGluArgTrpTyrCysAspGlnAspArgAspCysAspAspGl 9963 : TGGA---CGCTGTATTCCTGAAAGATGGTACTGTGATCAAGACAGAGATTGTGATGATGG : 9907 3542 : ySerAspGluLeuAlaLeuCysProGlnArg : 3551 ||||||||||! ! ! !||| !:!!||| ySerAspGluProAsnThrCysGlyLysArg 9906 : CTCTGATGAACCTAACACTTGTGGTAAGAGA : 9875 vulgar: SPP00002932_2.0 3204 3551 . JSZB01003496.1:subseq(0,100000) 58398 9874 - 574 M 59 177 5 0 2 I 0 793 3 0 2 M 58 174 G 0 3 M 2 6 S 0 2 5 0 2 I 0 8542 3 0 2 S 1 1 M 83 249 5 0 2 I 0 952 3 0 2 M 52 156 5 0 2 I 0 28681 3 0 2 M 23 69 S 0 1 5 0 2 I 0 955 3 0 2 S 1 2 M 4 12 G 2 0 M 20 60 5 0 2 I 0 7537 3 0 2 M 2 6 F 0 5 M 11 33 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 9875 58398 574 - . gene_id 2 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 58222 58398 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 58222 58398 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 58220 58221 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 57425 58221 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 57425 57426 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 57240 57424 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 57240 57424 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 57238 57239 . - . intron_id 2 ; splice_site "gt" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 48694 57239 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 48694 48695 . - . intron_id 1 ; splice_site "TG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 48444 48693 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 48444 48693 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 48442 48443 . - . intron_id 3 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 47488 48443 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 47488 47489 . - . intron_id 2 ; splice_site "TG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 47332 47487 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 47332 47487 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 47330 47331 . - . intron_id 4 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 18647 47331 . - . intron_id 4 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 18647 18648 . - . intron_id 3 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 18577 18646 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 18577 18646 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 18575 18576 . - . intron_id 5 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 17618 18576 . - . intron_id 5 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 17618 17619 . - . intron_id 4 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 17544 17617 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 17544 17617 . - . insertions 0 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 17542 17543 . - . intron_id 6 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 10003 17543 . - . intron_id 6 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 10003 10004 . - . intron_id 5 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 9875 10002 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 9875 10002 . - . insertions 0 ; deletions 1 ; frameshifts 5 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 9875 58398 574 - . alignment_id 2 ; Query SPP00002932_2.0 ; Align 58399 3205 177 ; Align 57425 3264 174 ; Align 57248 3322 6 ; Align 48693 3325 249 ; Align 47488 3408 156 ; Align 18647 3460 69 ; Align 17616 3484 12 ; Align 17604 3490 60 ; Align 10003 3510 6 ; Align 9992 3512 33 ; Align 9959 3524 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 435 Query range: 3590 -> 3860 Target range: 64722 -> 4697 3591 : AsnHisHisCysAspSerAsnGluTrpGlnCysAlaAsn<->LysArgCysIleProGlu : 3609 :!!:!! !|||! !|||:::! !!:: |||!.!:!! ! !!|||||||||! AspAsnSerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAla 64722 : GATAATTCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCC : 64665 3610 : SerTrpGlnCysAspThrPheAsnAspCysGluAspAsnSerAspGluAspSerSerHis : 3629 ||||||!!.||||||! ! !!!.|||||| !|||..!|||||||||.!.!:!!!!! ! SerTrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysPro 64664 : AGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCC : 64605 3630 : Cys<->AlaSerArgThrCysArgProGlyGlnPheArgCysAlaAsnGlyArgCysIle : 3648 ! ||| !!! !:!!||| ! !!..! ! |||! !|||! !||| !||||||||| ThrGlnAlaProThrSerCysSerAlaSerTyrPheThrCysAspAsnTyrArgCysIle 64604 : ACCCAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAATTACCGGTGTATC : 64545 3649 : ProGlnAlaTrpLysCysAspValAspAsnAspCysGlyAspHisSerAspGluProIle : 3668 |||:!! !||| ||||||..!||||||||||||! !||| !||||||||| ProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGlu------ 64544 : CCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAA------ : 64488 3669 : GluGluCys{M} >>>> Target Intron 1 >>>> {et}SerSerAlaHisLeu : 3677 :!!.!.|||{!} 47982 bp {!:}|||:!! !||| ! LysAsnCys{I}++ --{le}SerAlaLeuHisThr 64487 : AAGAACTGT{A}gt.........................cc{TC}TCAGCGCTTCACACC : 16482 3678 : CysAspAsnPheThrGluPheSerCysLysThrAsnTyrArgCysIleProLysTrpAla : 3697 |||.!.::: |||! |||!!!||| .!!:!! |||||||||||| ! ! ! CysGlnSer---ThrAlaPheThrCys---AlaAspGlyArgCysIleProTyrArgTyr 16481 : TGCCAGTCG---ACTGCCTTCACCTGT---GCCGATGGGCGATGCATCCCGTATCGTTAC : 16428 3698 : ValCysAsnGlyValAspAspCysArgAspAsnSerAspGluGlnGlyCysGluGluArg : 3717 !|||:!! ! !:!!|||||| !|||..!||||||||| !|||||| ! ||| ArgCysAspHisTyrAsnAspCysValAspGlySerAspGluAlaGlyCysLeuPheArg 16427 : CGCTGTGATCACTATAACGACTGTGTTGATGGTAGCGACGAGGCAGGGTGCCTGTTCAGG : 16368 3718 : ThrCysHisProValGlyAspPheArgCysLysAsnHisHisCysIleProLeuArgTrp : 3737 !|||:!! !!..!!.!!!:|||! !||| |||... ! ||||||||||||!.! GluCysAsnAlaThrAlaGluPheThrCysGlyAsnArgLysCysIleProLeuHisLeu 16367 : GAGTGCAACGCCACCGCGGAGTTTACCTGCGGTAACAGAAAGTGCATCCCTCTTCACCTT : 16308 3738 : GlnCysAspGlyGlnAsnAspCysGlyAspAsn<-><->SerAspGluGluAsnCys{A} : 3755 ||||||||| !|||:!!||| !|||||| |||||||||:!!||||||{ } ValCysAspGlyValAsnAsnCysHisAspAsnAsnThrSerAspGluLysAsnCys{P} 16307 : GTCTGCGACGGTGTAAACAACTGCCATGATAATAATACTTCAGATGAGAAAAACTGC{C} : 16248 3756 : >>>> Target Intron 2 >>>> {la}ProArgGluCysThrGluSerGluPhe : 3764 6245 bp {!!} !!!:! !|||!:!!!:||||||||| ++ ++{ro}ThrGlnProCysSerAspSerGluPhe 16247 : gt.........................ag{cC}ACTCAACCATGCAGTGACAGTGAGTTC : 9976 3765 : ArgCysValAsnGlnGlnCysIleProSerArgTrpIleCysAspHisTyrAsnAspCys : 3784 !.!|||..!::! !!::|||||||||..!|||||| !||||||!!. !!!..|||||| HisCysThrSerGlyArgCysIleProGluArgTrpTyrCysAspGlnAspArgAspCys 9975 : CACTGCACATCTGGACGCTGTATTCCTGAAAGATGGTACTGTGATCAAGACAGAGATTGT : 9916 3785 : GlyAspAsnSerAspGlu<->ArgAspCysGluMetArgThrCysHisProGluTyr{Ph : 3803 ! !|||..!||||||||| !.! !|||! ! !|||..! !! ! |||||| ! {.! AspAspGlySerAspGluProAsnThrCysGlyLysArgValSerLysProGluLys{Le 9915 : GATGATGGCTCTGATGAACCTAACACTTGTGGTAAGAGAGTAAGCAAGCCCGAAAAG{CT : 9856 3804 : } >>>> Target Intron 3 >>>> {e}GlnCysThrSerGlyHisCysValHis : 3812 } 4997 bp {!} ! ! !!||| !!...|||:!!! ! }-+ ++{u}AlaProProSerArgArgCysIlePro 9855 : }tt.........................ag{C}GCGCCTCCATCCAGGAGGTGCATCCCC : 4832 3813 : SerGluLeuLysCysAspGlySerAlaAspCysLeuAspAlaSerAspGluAlaAspCys : 3832 ..!...! ! |||||||||..!||||||||| !|||!.!! !|||||| !.!. ! GlnSerTrpValCysAspGlyAspAlaAspCysAlaAspGlyTyrAspGluTyrGlnAsn 4831 : CAATCTTGGGTCTGTGATGGTGATGCAGATTGTGCCGATGGCTATGATGAGTATCAAAAT : 4772 3833 : ProThrArgPheProAspGlyAlaTyrCysGlnAlaThrMetPheGluCysLysAsnHis : 3852 !|||||| !! !|||...! !!.! ||| |||!!.||| CysThrArg------------ArgSerCysSerGluAsnAspPheThrCysAsnAsnGly 4771 : TGCACCAGG------------AGATCTTGCTCTGAAAATGATTTCACCTGTAATAATGGA : 4724 3853 : ValCysIleProProTyrTrpLys : 3860 :!!|||:!!|||! !!::!::!:! LeuCysValProArgTrpTyrArg 4723 : CTGTGTGTCCCACGCTGGTACAGG : 4698 vulgar: SPP00002932_2.0 3590 3860 . JSZB01003496.1:subseq(0,100000) 64722 4697 - 435 M 13 39 G 0 3 M 27 81 G 0 3 M 36 108 G 2 0 M 3 9 S 0 1 5 0 2 I 0 47978 3 0 2 S 1 2 M 8 24 G 1 0 M 5 15 G 1 0 M 61 183 G 0 6 M 6 18 S 0 1 5 0 2 I 0 6241 3 0 2 S 1 2 M 35 105 G 0 3 M 12 36 S 0 2 5 0 2 I 0 4993 3 0 2 S 1 1 M 32 96 G 4 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 4698 64722 435 - . gene_id 3 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64722 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64722 . - . insertions 6 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16497 64478 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16497 16498 . - . intron_id 0 ; splice_site "CC" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16248 16496 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16248 16496 . - . insertions 6 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 16246 16247 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 10003 16247 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 10003 10004 . - . intron_id 1 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 9855 10002 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 9855 10002 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 9853 9854 . - . intron_id 3 ; splice_site "TT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 4858 9854 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 4858 4859 . - . intron_id 2 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 4698 4857 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 4698 4857 . - . insertions 0 ; deletions 4 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 4698 64722 435 - . alignment_id 3 ; Query SPP00002932_2.0 ; Align 64723 3591 39 ; Align 64681 3604 81 ; Align 64597 3631 108 ; Align 64489 3669 9 ; Align 16495 3673 24 ; Align 16471 3682 15 ; Align 16456 3688 183 ; Align 16267 3749 18 ; Align 10001 3756 105 ; Align 9893 3791 36 ; Align 4857 3804 96 ; Align 4761 3840 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 434 Query range: 25 -> 254 Target range: 64719 -> 6332 26 : GlnGluCysAspSerAlaHisPheArgCysGly<->SerGlyHisCysIleProAlaAsp : 44 .!....|||! !|||:!! |||! !|||||| .!!||| ||||||||||||..! AsnSerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAlaSer 64719 : AATTCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGC : 64662 45 : TrpArgCysAspGlyThrLysAspCysSerAspAspAlaAspGluIleGlyCys<-><-> : 63 |||!.!|||||| ! !|||||||||! !|||! !::!|||||| ..!||| TrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysProThr 64661 : TGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCCACC : 64602 64 : <->AlaValValThrCysGlnGlnGlyTyrPheLysCysGlnSerGluGlyGlnCysIle : 81 ||| !..!:!!|||... !..!||||||! |||.!.!:! ! !:!|||||| GlnAlaProThrSerCysSerAlaSerTyrPheThrCysAspAsnTyr---ArgCysIle 64601 : CAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAATTAC---CGGTGTATC : 64545 82 : ProAsnSerTrpValCysAspGlnAspGlnAspCysAspAspGlySerAspGluArgGln : 101 |||!!.!:!|||:!!|||||| !|||.!.||||||!!:|||||||||||||||!:!.!. ProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGluLysAsn 64544 : CCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAGAAC : 64485 102 : Asp{C} >>>> Target Intron 1 >>>> {ys}SerGlnSerThrCysSerSer : 110 !{ } 1102 bp { }! ! !..!|||||| ! !! Cys{T}++ ++{hr}PheThrGluThrCysLeuPro 64484 : TGT{A}gt.........................ag{CA}TTTACAGAGACATGCCTGCCT : 63356 111 : HisGlnIleThrCysSerAsnGlyGlnCysIleProSerGluTyrArgCysAspHisVal : 130 !|||.!! !||| !!:!! !!:!|||||| ! !...!:! !|||||| ! ! SerGlnPheHisCysProAspHisArgCysIleAspLeuSerPheValCysAspGlyAsp 63355 : AGTCAGTTTCACTGCCCTGACCATCGATGTATTGATCTATCTTTTGTCTGTGATGGGGAT : 63296 131 : ArgAspCysProAspGlyAlaAspGluAsnAspCys{G} >>>> Target Intron : 143 ..!|||||| !||||||:!!|||||||||:!!|||{ } 46766 bp GluAspCysValAspGlySerAspGluAsnAsnCys{A}++ 63295 : GAGGACTGTGTTGATGGATCTGATGAGAATAATTGT{G}gt................... : 63254 144 : 2 >>>> {ln}TyrProThrCysGluGln<-><->LeuThrCysAspAsnGlyAlaCys : 157 { !} !! !||||||:!!..! !!!||||||! !:!!||| !||| ++{la}LeuHisThrCysGlnSerThrAlaPheThrCysAlaAspGlyArgCys 63253 : ......ag{CG}CTTCACACCTGCCAGTCGACTGCCTTCACCTGTGCCGATGGGCGATGC : 16443 158 : TyrAsnThrSerGlnLysCysAspTrpLysValAspCysArgAspSerSerAspGluIle : 177 ! ! !! ! :::|||||| ! !|||||| !|||.!!||||||||| ! IleProTyrArgTyrArgCysAspHisTyrAsnAspCysValAspGlySerAspGluAla 16442 : ATCCCGTATCGTTACCGCTGTGATCACTATAACGACTGTGTTGATGGTAGCGACGAGGCA : 16383 178 : AsnCys<-><->ThrGluIleCysLeuHisAsnGluPheSerCysGlyAsnGlyGluCys : 195 ...||| ! !||| ! ! ! ! ||||||!!!||||||||| !!:!!||| GlyCysLeuPheArgGluCysAsnAlaThrAlaGluPheThrCysGlyAsnArgLysCys 16382 : GGGTGCCTGTTCAGGGAGTGCAACGCCACCGCGGAGTTTACCTGCGGTAACAGAAAGTGC : 16323 196 : IleProArgAlaTyrValCysAspHisAspAsnAspCysGlnAspGlySerAspGluHis : 215 ||||||! ! ! !||||||||| !! |||:!!|||!!.||| !:!:!! IleProLeuHisLeuValCysAspGlyValAsnAsnCysHisAsp---AsnAsnThrSer 16322 : ATCCCTCTTCACCTTGTCTGCGACGGTGTAAACAACTGCCATGAT---AATAATACTTCA : 16266 216 : {A} >>>> Target Intron 3 >>>> {la}CysAsnTyrProThrCysGlyGly : 224 {!} 9814 bp {.!}! !:!! !!||| !||| !.!! {V}-+ ++{al}TyrHisAspProGluCysLeuSer 16265 : {G}at.........................ag{tg}TATCATGATCCAGAATGCTTAAGT : 6425 225 : TyrGlnPheThrCysProSerGlyArgCysIleTyrGlnAsnTrpValCysAspGlyGlu : 244 !!:!!||| !||| !!!!|||||||||||| ! :!! |||:!!|||||||||!!: AspGluPheGlnCysAspThrGlyArgCysIleGlnLysAlaTrpIleCysAspGlyAsp 6424 : GATGAGTTCCAGTGTGACACTGGGCGGTGCATCCAAAAAGCATGGATCTGTGATGGTGAT : 6365 245 : AspAspCysLysAspAsnGlyAspGluAsp : 254 :!!|||||| !|||! .!!||||||||| AsnAspCysGlyAspMetSerAspGluAsp 6364 : AATGACTGTGGGGACATGAGTGATGAGGAT : 6333 vulgar: SPP00002932_2.0 25 254 . JSZB01003496.1:subseq(0,100000) 64719 6332 - 434 M 11 33 G 0 3 M 26 78 G 0 9 M 15 45 G 1 0 M 24 72 S 0 1 5 0 2 I 0 1098 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 46762 3 0 2 S 1 2 M 6 18 G 0 6 M 30 90 G 0 6 M 31 93 G 1 0 M 4 12 S 0 1 5 0 2 I 0 9810 3 0 2 S 1 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 6333 64719 434 - . gene_id 4 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64719 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64719 . - . insertions 12 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 63377 64478 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 63377 63378 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 63257 63376 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 63257 63376 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 63255 63256 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16491 63256 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16491 16492 . - . intron_id 1 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16263 16490 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16263 16490 . - . insertions 12 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 16261 16262 . - . intron_id 3 ; splice_site "AT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 6449 16262 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 6449 6450 . - . intron_id 2 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 6333 6448 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 6333 6448 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 6333 64719 434 - . alignment_id 4 ; Query SPP00002932_2.0 ; Align 64720 26 33 ; Align 64684 37 78 ; Align 64597 63 45 ; Align 64552 79 72 ; Align 63375 104 117 ; Align 16489 144 18 ; Align 16465 150 90 ; Align 16369 180 93 ; Align 16276 212 12 ; Align 6447 217 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 429 Query range: 2737 -> 2991 Target range: 65994 -> 9874 2738 : LeuHisThrCysSerProThrAlaPheThrCysAlaAsnGlyArgCysValGlnTyrSer : 2757 |||.!. !!|||.!. :::||| ||| !!:!||| !!||||||! |||||| LeuGluProCysGlySerLeuSerPheProCysAspSerGlyGlyCysValProTyrSer 65994 : CTGGAACCATGTGGctccctttcctttccctgtgaCAGTGGTGGATGTGTGCCCTATTCC : 65937 2758 : TyrArgCysAspTyrTyrAsnAspCysGlyAspGlySerAspGluAlaGlyCys<->Leu : 2776 |||||||||||| !||||||||| !|||..!||||||||| ! !||| ! TyrArgCysAspGlyIleAsnAspCysTyrAspAsnSerAspGluHisGlnCysGlyThr 65936 : TACCGCTGTGATGGAATCAATGACTGTTACGATAATAGCGACGAGCATCAGTGTGGCACA : 65877 2777 : Phe{A} >>>> Target Intron 1 >>>> {rg}AspCysAsnAlaThrThrGlu : 2785 |||{!} 1149 bp {.!}:!!! ! !|||:!!:!!! ! Phe{A}++ ++{sn}AsnSerCysAlaSerSerAla 65876 : TTC{A}gt.........................ag{AT}AATTCCTGTGCCTCTTCAGCA : 64701 2786 : PheMetCys<->AsnAsnArgArgCysIleProArgGluPheIleCysAsnGlyValAsp : 2804 |||! ||| :!!... !! !!||||||||| !...!:: !|||:!! ! ! ! PheThrCysGlyHisGlyGlyGlyCysIleProAlaSerTrpHisCysAspLysHisLys 64700 : TTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAA : 64641 2805 : AsnCysHisAspAsnAsnThrSerAspGluLysAsnCysProAspArg<-><-><->Thr : 2821 :!!||| |||..! |||||||||:!!||||||||| !!:! :!! AspCysLeuAspGly------SerAspGluGlnAsnCysProThrGlnAlaProThrSer 64640 : GATTGTTTGGATGGC------AGTGATGAGCAGAACTGCCCCACCCAAGCACCCACTTCC : 64587 2822 : CysGlnSerGlyTyrThrLysCysHisAsnSerAsnIleCysIleProArgValTyrLeu : 2841 |||...:!!..!||| !! ||| !!|||! !... |||||||||!:! !!::||| CysSerAlaSerTyrPheThrCysAspAsnTyrArg---CysIleProLysAsnTrpLeu 64586 : TGCTCTGCATCCTACTTCACTTGTGATAATTACCGG---TGTATCCCAAAGAACTGGCTC : 64530 2842 : CysAspGlyAspAsnAspCysGlyAspAsnSerAspGluAsnProThrTyrCys{T} > : 2860 |||||| !||||||||||||! !|||..!|||||||||!!. !!|||{|} CysAspThrAspAsnAspCysGluAspGlySerAspGluLys------AsnCys{T}++ 64529 : TGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAG------AACTGT{A}gt. : 64476 2861 : >>> Target Intron 2 >>>> {hr}ThrHisThrCysSerSerSerGluPheGln : 2870 47988 bp {||} !|||||||||..!|||!!!! ||| ++{hr}LeuHisThrCysGlnSerThrAlaPheThr 64475 : ........................ag{CG}CTTCACACCTGCCAGTCGACTGCCTTCACC : 16461 2871 : CysAlaSerGlyArgCysIleProGlnHisTrpTyrCysAspGlnGluThrAspCysPhe : 2890 ||||||..!||||||||||||||| ! !.!!:: !||||||!!. ! !.!|||||| !! CysAlaAspGlyArgCysIleProTyrArgTyrArgCysAspHisTyrAsnAspCysVal 16460 : TGTGCCGATGGGCGATGCATCCCGTATCGTTACCGCTGTGATCACTATAACGACTGTGTT : 16401 2891 : AspAlaSerAspGluProAlaSerCysGlyHisSerGluArgThrCysLeuAlaAspGlu : 2910 |||!.!||||||||| |||.!!||| ! !!!!||| !!!.!..! !||| ||| AspGlySerAspGlu---AlaGlyCysLeuPheArgGluCysAsnAlaThrAla---Glu 16400 : GATGGTAGCGACGAG---GCAGGGTGCCTGTTCAGGGAGTGCAACGCCACCGCG---GAG : 16347 2911 : PheLysCysAspGlyGlyArgCysIleProSerGluTrpIleCysAspGlyAspAsnAsp : 2930 |||! |||! !..! !!!:!||||||||| !.!. :!!|||||||||! |||:!! PheThrCysGlyAsnArgLysCysIleProLeuHisLeuValCysAspGlyValAsnAsn 16346 : TTTACCTGCGGTAACAGAAAGTGCATCCCTCTTCACCTTGTCTGCGACGGTGTAAACAAC : 16287 2931 : CysGlyAspMetSerAspGluAspLysArgHisGlnCys{G} >>>> Target Intr : 2944 ||| !|||! !:! !..!|||:!!!:!:!! |||{!} 6245 bp CysHisAspAsnAsnThrSerAspGluLysAsn---Cys{P}++ 16286 : TGCCATGATAATAATACTTCAGATGAGAAAAAC---TGC{C}gt................ : 16245 2945 : on 3 >>>> {ln}AsnGlnAsnCysSerAspSerGluPheLeuCysValAsnAspArg : 2959 { }!.!||| ||||||||||||||||||! !|||..!::!! ||| ++{ro}ThrGlnProCysSerAspSerGluPheHisCysThrSerGlyArg 16244 : .........ag{cC}ACTCAACCATGCAGTGACAGTGAGTTCCACTGCACATCTGGACGC : 9958 2960 : ProProAspArgArgCysIleProGlnSerTrpValCysAspGlyAspValAspCysThr : 2979 |||||||||:!!!!!||| !|||||| !||| !|||||| ! ---------------CysIleProGluArgTrpTyrCysAspGlnAspArgAspCysAsp 9957 : ---------------TGTATTCCTGAAAGATGGTACTGTGATCAAGACAGAGATTGTGAT : 9913 2980 : AspGlyTyrAspGluAsnGlnAsnCysThrArgArg : 2991 ||||||! !|||||| !.!.!.!||| !!:!||| AspGlySerAspGluProAsnThrCysGlyLysArg 9912 : GATGGCTCTGATGAACCTAACACTTGTGGTAAGAGA : 9875 vulgar: SPP00002932_2.0 2737 2991 . JSZB01003496.1:subseq(0,100000) 65994 9874 - 429 M 38 114 G 0 3 M 2 6 S 0 1 5 0 2 I 0 1145 3 0 2 S 1 2 M 10 30 G 0 3 M 21 63 G 2 0 M 9 27 G 0 9 M 13 39 G 1 0 M 21 63 G 2 0 M 2 6 S 0 1 5 0 2 I 0 47984 3 0 2 S 1 2 M 35 105 G 1 0 M 12 36 G 1 0 M 32 96 G 1 0 M 1 3 S 0 1 5 0 2 I 0 6241 3 0 2 S 1 2 M 15 45 G 5 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 9875 65994 429 - . gene_id 5 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 65871 65994 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 65871 65994 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 65869 65870 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 64722 65870 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 64722 64723 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64721 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64721 . - . insertions 12 ; deletions 5 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16491 64478 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16491 16492 . - . intron_id 1 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16248 16490 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16248 16490 . - . insertions 0 ; deletions 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 16246 16247 . - . intron_id 3 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 10003 16247 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 10003 10004 . - . intron_id 2 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 9875 10002 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 9875 10002 . - . insertions 0 ; deletions 5 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 9875 65994 429 - . alignment_id 5 ; Query SPP00002932_2.0 ; Align 65995 2738 114 ; Align 65878 2776 6 ; Align 64720 2779 30 ; Align 64687 2789 63 ; Align 64624 2812 27 ; Align 64588 2821 39 ; Align 64549 2835 63 ; Align 64486 2858 6 ; Align 16489 2861 105 ; Align 16384 2897 36 ; Align 16348 2910 96 ; Align 16252 2943 3 ; Align 10001 2945 45 ; Align 9956 2965 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 408 Query range: 1468 -> 1698 Target range: 94455 -> 88886 1469 : ValAlaValAspPheAspSerIleSerGlyArgIlePheTrpSerAspAlaThrGlnGly : 1488 |||!.!||||||||| !!! ! ! ! !|||:!!||||||!!!|||.!!..!|||! ! ValGlyValAspPheHisTyrArgLeuGlnArgValPheTrpThrAspThrValGlnAsp 94455 : GTGGGTGTGGACTTTCACTATCGCCTACAGAGAGTCTTTTGGACTGACACTGTGCAAGAT : 94398 1489 : Lys >>>> Target Intron 1 >>>> ThrTrpSerAlaPheGlnAsnGlyThrA : 1499 ||| 1653 bp ..!!::|||!.! ! |||||| !: Lys++ ++ValPheSerValAspIleAsnGlyLeuA 94397 : AAGgt.........................aggTCTTTTCAGTTGATATTAATGGTTTAA : 92712 1500 : spArgArgValValPheAspSerSerIleIleLeuThrGluThrIleAlaIleAspTrpV : 1519 !!! !!:!! !|||.!!:!! !|||:!! ! ! !!|||!.!:!:|||:!:||||||: snIleGlnGluValLeuAsnValSerValAspAspProGluAsnLeuAlaValAspTrpI 92711 : ATATCCAAGAAGTTCTCAATGTTTCTGTTGATGATCCAGAAAATCTGGCTGTGGACTGGA : 92652 1520 : alGlyArgAsnLeuTyrTrpThrAspTyrAlaLeuGluThrIleGluValSerLysIleA : 1539 !!..!!.!!!.|||||| !..!!!: ! !:!!.!. !||||||||| !!!.:!:| leAsnAsnLysLeuTyrLeuValGluThrLysValAsnArgIleGluValValAsnLeuA 92651 : TTAATAATAAACTTTATCTGGTGGAGACCAAGGTCAACCGCATAGAAGTGGTCAATTTGG : 92592 1540 : spGlySerHisArgThrValLeuIleSerLysAsnLeuThrAsnProArgGlyLeuAlaL : 1559 ||||||||:!!|||..!:!!||||||!!!:!!|||||| !:!!|||||||||:!!|||| spGlySerAsnArgValIleLeuIleThrGluAsnLeuGlyHisProArgGlyIleAlaL 92591 : ATGGAAGCAACCGTGTTATCCTTATAACAGAAAACTTAGGGCATCCTAGAGGAATTGCCC : 92532 1560 : euAspProArgMet{As} >>>> Target Intron 2 >>>> {n}GluHisLeuL : 1568 ||||||||! !:!:{..} 1035 bp {!} .... euAspProThrLeu{Gl}++ ++{y}TyrLeuPheP 92531 : TGGACCCAACTCTT{GG}gt.........................ag{t}tatttatttt : 91470 1569 : euPhe<->TrpSerAspTrpGlyHisHisProArgIleGluArgAlaSerMetAspGlyS : 1587 .. |||!!!..! ..! .!.|||!:!:!:|||||||||! !|||||||||! heSerAspTrpArgSerLeuSerGlyGluProLysValGluArgAlaPheMetAspGlyT 91469 : tctcagattgGAGGAGCCTTTCTGGGGAACCTAAGGTGGAAAGGGCTTTCATGGATGGCA : 91410 1588 : erMetArgThrValIleValGlnAspLysIlePheTrpProCysGlyLeuThrIleAspT : 1607 !!! |||! !! !:!:|||:!! |||:!: ||||||..!|||:!!|||:!!||| hrAsnArgLysGluLeuValLysThrLysLeuGlyTrpProAlaGlyIleThrLeuAspM 91409 : CCAACCGTAAGGAGTTGGTAAAAACAAAGCTGGGATGGCCCGCTGGGATAACTCTCGACA : 91350 1608 : yrProAsnArgLeuLeuTyrPheMetAspSerTyrLeuAspTyrMetAspPheCysAspT : 1627 !:::!:!! !:!!|||!:::!:|||!!! !!!!:!!|||!!:!!: ! !| etValSerLysArgValTyrTrpValAspCysArgPheAsnTyrIleGluThrValThrT 91349 : TGGTATCAAAGCGTGTTTACTGGGTTGACTGCCGTTTTAATTACATTGAGACTGTAACTT : 91290 1628 : yrAsnGlyHisHis{Ar} >>>> Target Intron 3 >>>> {g}ArgGlnValI : 1636 ||:!!||| !!!.{||} 2188 bp {|}!:! !|||| yrAspGlyIleGln{Ar}++ ++{g}LysThrValI 91289 : ATGATGGAATTCAA{AG}gt.........................ag{G}AAGACAGTAA : 89075 1637 : leAlaSerAspLeuIleIleArgHisProTyrAlaLeuThrLeuPheGluAspSerValT : 1656 || !.!!! !! !:!!|||! !||||||!:!!.!:!!!:!|||||||||:!! !:!!! leHisGlyGlySerLeuIleProHisProPheGlyIleSerLeuPheGluAsnHisIleP 89074 : TTCATGGAGGCTCACTTATTCCTCATCCCTTTGGAATAAGCTTGTTTGAAAATCACATAT : 89015 1657 : yrTrpThrAspArgAlaThrArgArgValMetArgAlaAsnLysTrpHisGlyGlyAsnG : 1676 :!!::|||||| !!.!!! !! ! !||||||!:!|||||||||!:: ! ! ! !!:!! hePheThrAspTrpThrLysMetAlaValMetLysAlaAsnLysPheLysGluThrSerP 89014 : TCTTTACTGATTGGACAAAGATGGCAGTAATGAAGGCAAACAAGTTCAAGGAGACCAGCC : 88955 1677 : lnSerValValMetTyrAsnIleGlnTrpProLeuGlyIleValAlaValHisProSerL : 1696 !..!||| ! ! ::! !! ! !!|||!!!|||:!:!.!!.! !||| !! !! roGluValTyrTyrGlnSerSerLeuArgProPheGlyValAlaValTyrHisSerLeuA 88954 : CAGAAGTGTACTACCAGTCTTCCCTGAGGCCCTTTGGAGTGGCTGTTTATCATTCTCTCA : 88895 1697 : ysGlnPro : 1698 :!|||||| rgGlnPro 88894 : GGCAGCCC : 88887 vulgar: SPP00002932_2.0 1468 1698 . JSZB01003496.1:subseq(0,100000) 94455 88886 - 408 M 21 63 5 0 2 I 0 1649 3 0 2 M 74 222 S 0 2 5 0 2 I 0 1031 3 0 2 S 1 1 M 5 15 G 0 3 M 62 186 S 0 2 5 0 2 I 0 2184 3 0 2 S 1 1 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 88887 94455 408 - . gene_id 6 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 94393 94455 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 94393 94455 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 94391 94392 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 92740 94392 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 92740 92741 . - . intron_id 0 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 92516 92739 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 92516 92739 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 92514 92515 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 91481 92515 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 91481 91482 . - . intron_id 1 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 91274 91480 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 91274 91480 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 91272 91273 . - . intron_id 3 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 89086 91273 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 89086 89087 . - . intron_id 2 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 88887 89085 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 88887 89085 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 88887 94455 408 - . alignment_id 6 ; Query SPP00002932_2.0 ; Align 94456 1469 63 ; Align 92740 1490 222 ; Align 91480 1565 15 ; Align 91462 1570 186 ; Align 89085 1633 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 370 Query range: 3255 -> 3482 Target range: 92724 -> 86478 3256 : LeuAsnLysThrAsnLysGluThrIleIleAsnHisArgLeuProAlaAlaGluSerLeu : 3275 :!!||| !|||! :!! !:!!:!!||| ! !:!! !! ! !!|||!:!||| IleAsnGlyLeuAsnIleGlnGluValLeuAsnValSerValAspAspProGluAsnLeu 92724 : ATTAATGGTTTAAATATCCAAGAAGTTCTCAATGTTTCTGTTGATGATCCAGAAAATCTG : 92667 3276 : AlaValAspTrpValSerArgLysLeuTyrTrpLeuAspAlaArgLeuAspGlyLeuPhe : 3295 ||||||||||||:!!!:!!.!||||||||| !:!!!!:.!!!:!:!!:!! !!:!! AlaValAspTrpIleAsnAsnLysLeuTyrLeuValGluThrLysValAsnArgIleGlu 92666 : GCTGTGGACTGGATTAATAATAAACTTTATCTGGTGGAGACCAAGGTCAACCGCATAGAA : 92607 3296 : ValSerAspLeuAsnGlyGlyHisArgArgMetLeuAlaGlnHisCysValAspAlaAsn : 3315 ||| !:!!|||:!!|||.!!:!!||| !!!:||| ! !.!. !:!!! ! ! ValValAsnLeuAspGlySerAsnArgValIleLeuIleThrGluAsnLeuGlyHisPro 92606 : GTGGTCAATTTGGATGGAAGCAACCGTGTTATCCTTATAACAGAAAACTTAGGGCATCCT : 92547 3316 : AsnThrPheCysPheAspAsnProArgGlyLeuAlaLeuHis >>>> Target Intr : 3330 !.. !.!!..!.!.||| !!! !|||! !!.!:!!||| 1020 bp ArgGlyIleAlaLeuAspProThrLeuGly***ValIleHis-- 92546 : AGAGGAATTGCCCTGGACCCAACTCTTGGGTAAGTGATACATaa................ : 92500 3331 : on 1 >>>> ProGlnTyrGlyTyrLeuTyrTrpAlaAspTrpGlyHisArgAlaTyrI : 3346 ::: ||| !..! ..! ..! !! ! : +-SerTyrLeuPhePheSerAspTrpArgSerLeuSerGlyGluProLysV 92499 : .........atagttatttatttttctcagattgGAGGAGCCTTTCTGGGGAACCTAAGG : 91434 3347 : leGlyArgValGlyMetAspGlyThrAsnLysSerValIleIleSerThrLysLeuGluT : 3366 !:! !|||!.! !|||||||||||||||:::!.!! !:!::!!!.!|||||||||! !| alGluArgAlaPheMetAspGlyThrAsnArgLysGluLeuValLysThrLysLeuGlyT 91433 : TGGAAAGGGCTTTCATGGATGGCACCAACCGTAAGGAGTTGGTAAAAACAAAGCTGGGAT : 91374 3367 : rpProAsnGlyIleThrIleAspTyrThrAsnAspLeuLeuTyrTrpAlaAspAlaHisL : 3386 ||||| !|||||||||:!!||| ..!::: ! ! !:!!||||||!.!|||..!!.!! rpProAlaGlyIleThrLeuAspMetValSerLysArgValTyrTrpValAspCysArgP 91373 : GGCCCGCTGGGATAACTCTCGACATGGTATCAAAGCGTGTTTACTGGGTTGACTGCCGTT : 91314 3387 : euGlyTyrIleGluTyrSerAspLeuGluGlyHisHis{Ar} >>>> Target Intr : 3399 !!..!||||||||| ! ! !! !!!:||| !!!.{||} 2188 bp heAsnTyrIleGluThrValThrTyrAspGlyIleGln{Ar}++ 91313 : TTAATTACATTGAGACTGTAACTTATGATGGAATTCAA{AG}gt................ : 91271 3400 : on 2 >>>> {g}HisThrValTyrAspGlyAla<-><->LeuProHisProPheAlaI : 3413 {|} ! |||||| ! !!|||!.! :!!||||||||||||!.!| ++{g}LysThrValIleHisGlyGlySerLeuIleProHisProPheGlyI 91270 : .........ag{G}AAGACAGTAATTCATGGAGGCTCACTTATTCCTCATCCCTTTGGAA : 89039 3414 : leThrIlePheGluAspThrIleTyrTrpThrAspTrpAsnThrArgThrValGluLysG : 3433 ||!:!:!:||||||:!! !|||!:!!::|||||||||!..! !! !.!!||| !|||! leSerLeuPheGluAsnHisIlePhePheThrAspTrpThrLysMetAlaValMetLysA 89038 : TAAGCTTGTTTGAAAATCACATATTCTTTACTGATTGGACAAAGATGGCAGTAATGAAGG : 88979 3434 : lyAsnLysTyrAspGlySerAsnArgGlnThrLeuValAsnThrThrHisArgProPheA : 3453 .!||||||!:! ! ! !!!!!:!! !:!!..!! ! !.!.:!!:!!! |||||||||! laAsnLysPheLysGluThrSerProGluValTyrTyrGlnSerSerLeuArgProPheG 88978 : CAAACAAGTTCAAGGAGACCAGCCCAGAAGTGTACTACCAGTCTTCCCTGAGGCCCTTTG : 88919 3454 : spIleHisValTyrHisProTyrArgGlnProIle{V} >>>> Target Intron 3 : 3465 :!: !||||||||| !! !||||||||| !{|} 2351 bp lyValAlaValTyrHisSerLeuArgGlnProTyr{V}++ 88918 : GAGTGGCTGTTTATCATTCTCTCAGGCAGCCCTAT{G}gt.................... : 88880 3466 : >>>> {al}SerAsnProCysGlyThrAsnAsnGlyGlyCysSerHisLeuCysLeuI : 3482 {||}!:!|||||||||||| !:!!||||||||||||..!!!.:!!|||:!!: ++{al}AsnAsnProCysGlyAspAspAsnGlyGlyCysGluGlnValCysIleL 88879 : .....ag{TT}AACAACCCATGTGGAGATGACAATGGTGGCTGTGAACAGGTCTGCATCC : 86481 3483 : le : 3482 !! eu 86480 : TC : 86479 vulgar: SPP00002932_2.0 3255 3482 . JSZB01003496.1:subseq(0,100000) 92724 86478 - 370 M 74 222 5 0 2 I 0 1016 3 0 2 M 69 207 S 0 2 5 0 2 I 0 2184 3 0 2 S 1 1 M 7 21 G 0 6 M 58 174 S 0 1 5 0 2 I 0 2347 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 86479 92724 370 - . gene_id 7 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 92503 92724 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 92503 92724 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 92501 92502 . - . intron_id 1 ; splice_site "AA" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 91483 92502 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 91483 91484 . - . intron_id 0 ; splice_site "at" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 91274 91482 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 91274 91482 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 91272 91273 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 89086 91273 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 89086 89087 . - . intron_id 1 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 88883 89085 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 88883 89085 . - . insertions 6 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 88881 88882 . - . intron_id 3 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 86532 88882 . - . intron_id 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 86532 86533 . - . intron_id 2 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 86479 86531 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 86479 86531 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 86479 92724 370 - . alignment_id 7 ; Query SPP00002932_2.0 ; Align 92725 3256 222 ; Align 91483 3330 207 ; Align 89085 3400 21 ; Align 89058 3407 174 ; Align 86530 3466 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 363 Query range: 3630 -> 3878 Target range: 64725 -> 16248 3631 : AlaSerArgThrCysArgProGlyGlnPheArgCysAlaAsn<->GlyArgCysIlePro : 3649 !.!..!!.!:!!||| ! !!..! !|||! !|||!.!:!! ||| !!||||||||| ValAspAsnSerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIlePro 64725 : GTAGATAATTCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCT : 64668 3650 : GlnAlaTrpLysCysAspValAspAsnAspCysGlyAspHisSerAspGluProIleGlu : 3669 ::!||| ! |||||| ! !!!!.|||||| !||| !||||||||| :!! AlaSerTrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGlu------Gln 64667 : GCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAG------CAG : 64614 3670 : GluCysMetSerSerAlaHisLeuCysAspAsnPheThrGluPheSerCysLysThrAsn : 3689 .!.||| !!!..!|||! ! !! ! !::! :!! ! |||!!!||| !||| AsnCysProThrGlnAlaProThrSerCysSerAlaSerTyrPheThrCys---AspAsn 64613 : AACTGCCCCACCCAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGT---GATAAT : 64557 3690 : TyrArgCysIleProLysTrpAlaValCysAsnGlyValAspAspCysArgAspAsnSer : 3709 |||||||||||||||||| !:!!|||:!! !! !:!!||||||..!|||..!||| TyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySer 64556 : TACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCT : 64497 3710 : AspGluGlnGlyCys{G} >>>> Target Intron 1 >>>> {lu}GluArgThr : 3718 ||||||:!!..!|||{ } 3049 bp { !} ||| !! AspGluLysAsnCys{T}++ ++{hr}ThrArgPro 64496 : GATGAAAAGAACTGT{A}gt.........................ag{CA}ACCAGGCCT : 61421 3719 : <-><->CysHisProValGlyAspPheArgCysLysAsnHisHis<->CysIleProLeu : 3735 !! !!.!! !!!:|||!:!|||:!!.!. !! ! ||||||||| ! ProGlyMetCysHisAlaAspGluPheGlnCysGlnGluAspGlyValCysIleProGly 61420 : CCTGGTATGTGCCATGCAGATGAATTTCAGTGTCAAGAAGATGGTGTCTGCATTCCGGGG : 61361 3736 : ArgTrpGlnCysAspGlyGlnAsnAspCysGlyAspAsnSerAspGluGluAsn<->Cys : 3754 !!!|||:!!|||||||||!!.:::|||||| ! !..!|||||||||.!.:!! ||| SerTrpGluCysAspGlyHisSerAspCysIleLeuGlySerAspGluHisHisGlyCys 61360 : AGCTGGGAGTGTGATGGTCACTCAGACTGCATCCTTGGTTCTGATGAGCACCATGGCTGT : 61301 3755 : AlaProArgGluCysThrGluSerGluPheArgCysValAsnGlnGlnCysIleProSer : 3774 !.!|||||| ||| ! !|||.!.|||! !|||! !||| !.!.||||||! !!!! GlyProArgThrCysLeuProSerHisPheLeuCysAspAsnGlyAsnCysIleHisArg 61300 : GGCCCCAGGACCTGCCTTCCATCTCATTTCCTCTGTGACAATGGAAACTGCATTCACAGA : 61241 3775 : ArgTrpIleCysAspHisTyrAsnAspCysGlyAspAsnSerAspGluArgAspCysGlu : 3794 !!|||:!!|||||| !!||||||||| !|||! |||||||||!:!|||||| GlyTrpLeuCysAspGlyAspAsnAspCysMetAspMetSerAspGluLysAspCysPro 61240 : GGGTGGCTCTGTGATGGGGACAATGACTGCATGGATATGAGTGATGAGAAGGACTGTCCC : 61181 3795 : {M} >>>> Target Intron 2 >>>> {et}<->ArgThrCysHisProGluTyr : 3802 {!} 44687 bp { !} !.!||||||!!. !! ! {T}-+ ++{hr}LeuHisThrCysGlnSerThrAla 61180 : {A}ct.........................ag{CG}CTTCACACCTGCCAGTCGACTGCC : 16467 3803 : PheGlnCysThrSerGlyHisCysValHisSerGluLeuLysCysAspGlySerAlaAsp : 3822 ||| |||.!!..!|||!..|||:!!! ! !...! !:::|||||| !! ! !||| PheThrCysAlaAspGlyArgCysIleProTyrArgTyrArgCysAspHisTyrAsnAsp 16466 : TTCACCTGTGCCGATGGGCGATGCATCCCGTATCGTTACCGCTGTGATCACTATAACGAC : 16407 3823 : CysLeuAspAlaSerAspGluAlaAspCysProThrArgPheProAspGlyAlaTyrCys : 3842 |||:!!|||!.!||||||||||||! |||! ! !||| !:!!!.! CysValAspGlySerAspGluAlaGlyCysLeuPheArgGluCysAsnAla--------- 16406 : TGTGTTGATGGTAGCGACGAGGCAGGGTGCCTGTTCAGGGAGTGCAACGCC--------- : 16353 3843 : GlnAlaThrMetPheGluCysLysAsnHisValCysIleProProTyrTrpLysCysAsp : 3862 .!!.!! !||| ||| |||... !|||||||||! !:!! |||||| ---ThrAlaGluPheThrCysGlyAsnArgLysCysIleProLeuHisLeuValCysAsp 16352 : ---ACCGCGGAGTTTACCTGCGGTAACAGAAAGTGCATCCCTCTTCACCTTGTCTGCGAC : 16299 3863 : GlyAspAspAspCysGlyAspGlySerAspGluGluLeuHisLeuCys : 3878 |||! :!!:!!||| !|||..!!:! !..!!!: ! ! !||| GlyValAsnAsnCysHisAspAsnAsnThrSerAspGluLysAsnCys 16298 : GGTGTAAACAACTGCCATGATAATAATACTTCAGATGAGAAAAACTGC : 16249 vulgar: SPP00002932_2.0 3630 3878 . JSZB01003496.1:subseq(0,100000) 64725 16248 - 363 M 14 42 G 0 3 M 22 66 G 2 0 M 18 54 G 1 0 M 27 81 S 0 1 5 0 2 I 0 3045 3 0 2 S 1 2 M 3 9 G 0 6 M 13 39 G 0 3 M 22 66 G 0 3 M 41 123 S 0 1 5 0 2 I 0 44683 3 0 2 S 1 2 G 0 3 M 44 132 G 4 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 16249 64725 363 - . gene_id 8 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64725 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64725 . - . insertions 3 ; deletions 3 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 61430 64478 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 61430 61431 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 61178 61429 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 61178 61429 . - . insertions 12 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 61176 61177 . - . intron_id 2 ; splice_site "CT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16491 61177 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16491 16492 . - . intron_id 1 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16249 16490 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16249 16490 . - . insertions 3 ; deletions 4 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 16249 64725 363 - . alignment_id 8 ; Query SPP00002932_2.0 ; Align 64726 3631 42 ; Align 64681 3645 66 ; Align 64615 3669 54 ; Align 64561 3688 81 ; Align 61428 3716 9 ; Align 61413 3719 39 ; Align 61371 3732 66 ; Align 61302 3754 123 ; Align 16486 3796 132 ; Align 16354 3844 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 312 Query range: 3667 -> 3825 Target range: 74309 -> 16275 3668 : IleGluGluCysMetSerSer{A} >>>> Target Intron 1 >>>> {la}His : 3676 :!!...|||||||||||||||{!} 9566 bp { !}:!! ValArgGluCysMetSerSer{A}++ ++{sp}Asn 74309 : GTTCGTGAGTGCATGAGCTCA{G}gt.........................ag{AT}AAT : 64719 3677 : LeuCysAspAsnPheThrGluPheSerCysLysThrAsnTyrArgCysIleProLysTrp : 3696 ! !|||! !::! :!!! !|||!!!||| !... !!||||||||| ! SerCysAlaSer---SerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAlaSer 64718 : TCCTGTGCCTCT---TCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGC : 64662 3697 : AlaValCysAsnGlyValAspAspCysArgAspAsnSerAspGluGlnGlyCys<-><-> : 3715 ! !|||:!! ! ! ! |||||| !|||..!||||||||||||..!||| TrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysProThr 64661 : TGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCCACC : 64602 3716 : GluGluArgThrCysHisProValGlyAspPheArgCysLysAsnHisHisCysIlePro : 3734 :!!! !! !|||! ! ! !!!.!..! !!|||! !||| ! |||:!!!..||||||||| GlnAlaProThrSerCysSerAlaSerTyrPheThrCysAspAsnTyrArgCysIlePro 64601 : CAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAATTACCGGTGTATCCCA : 64542 3735 : LeuArgTrpGlnCysAspGlyGlnAsnAspCysGlyAspAsnSerAspGluGluAsnCys : 3754 !!.!|||! |||||| !.!.|||||||||! !|||..!|||||||||:!!|||||| LysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGluLysAsnCys 64541 : AAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAGAACTGT : 64482 3755 : {A} >>>> Target Intron 2 >>>> {la}ProArgGluCysThrGluSerGlu : 3763 {.} 47988 bp {!!}! !!.! ||| !..!!!!! {T}++ ++{hr}LeuHisThrCysGlnSerThrAla 64481 : {A}gt.........................ag{CG}CTTCACACCTGCCAGTCGACTGCC : 16467 3764 : PheArgCysValAsnGlnGlnCysIleProSerArgTrpIleCysAspHisTyrAsnAsp : 3783 |||! !|||!.!:!! !!:!|||||||||! !|||!:: !|||||||||||||||||| PheThrCysAlaAspGlyArgCysIleProTyrArgTyrArgCysAspHisTyrAsnAsp 16466 : TTCACCTGTGCCGATGGGCGATGCATCCCGTATCGTTACCGCTGTGATCACTATAACGAC : 16407 3784 : CysGlyAspAsnSerAspGluArgAspCysGluMetArgThrCysHis<->ProGluTyr : 3802 |||! !|||..!||||||||| !! ||| !.!.||| !|||:!! !!! ! ! CysValAspGlySerAspGluAlaGlyCysLeuPheArgGluCysAsnAlaThrAlaGlu 16406 : TGTGTTGATGGTAGCGACGAGGCAGGGTGCCTGTTCAGGGAGTGCAACGCCACCGCGGAG : 16347 3803 : PheGlnCysThrSerGlyHisCysValHisSerGluLeuLysCysAspGlySerAlaAsp : 3822 ||| ||| !!:! !! ! |||:!!! ! !.!.||| ||||||||| ! !:!! PheThrCysGlyAsnArgLysCysIleProLeuHisLeuValCysAspGlyValAsnAsn 16346 : TTTACCTGCGGTAACAGAAAGTGCATCCCTCTTCACCTTGTCTGCGACGGTGTAAACAAC : 16287 3823 : CysLeuAsp : 3825 |||! !||| CysHisAsp 16286 : TGCCATGAT : 16276 vulgar: SPP00002932_2.0 3667 3825 . JSZB01003496.1:subseq(0,100000) 74309 16275 - 312 M 7 21 S 0 1 5 0 2 I 0 9562 3 0 2 S 1 2 M 5 15 G 1 0 M 33 99 G 0 6 M 40 120 S 0 1 5 0 2 I 0 47984 3 0 2 S 1 2 M 44 132 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 16276 74309 312 - . gene_id 9 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 74288 74309 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 74288 74309 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 74286 74287 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 64722 74287 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 64722 64723 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64479 64721 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64479 64721 . - . insertions 6 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 64477 64478 . - . intron_id 2 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 16491 64478 . - . intron_id 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 16491 16492 . - . intron_id 1 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 16276 16490 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 16276 16490 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 16276 74309 312 - . alignment_id 9 ; Query SPP00002932_2.0 ; Align 74310 3668 21 ; Align 64720 3676 15 ; Align 64705 3682 99 ; Align 64600 3715 120 ; Align 16489 3756 132 ; Align 16354 3800 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 290 Query range: 4140 -> 4267 Target range: 57409 -> 48458 4141 : ValMetGlnProAspGlyIleAlaValAspTrpValGlyArgHisIleTyrTrpSerAsp : 4160 |||! ..! !!!!:.!!|||||||||||||||||||||||| ! :!!||||||!!!||| ValThrMetThrGluSerIleAlaValAspTrpValGlyArgLysLeuTyrTrpThrAsp 57409 : GTCACCATGACTGAAAGTATTGCAGTAGATTGGGTAGGTCGCAAACTTTACTGGACAGAC : 57352 4161 : ValLysAsnLysArgIleGluValAlaLysLeuAspGlyArgTyrArgLysTrpLeuIle : 4180 ! :!!! !|||||||||:!!:!!||||||||||||||||||! !|||||| TyrAlaLeuGluThrIleGluValSerGluLeuAspGlyArgTyrArgThrValLeuIle 57351 : TATGCTCTGGAAACAATTGAAGTCTCTGAACTGGATGGGAGGTACCGGACTGTGCTGATT : 57292 4181 : SerThrAspLeuAspGlnProAlaAlaIleAlaValAsnProLysLeu{Gl} >>>> T : 4197 |||..!:!!:!! .!.||| !!.!:!!|||:!!:!!|||!:!:!!{.!} SerValAsnValThrAsnProArgGlyLeuAlaLeuAspProArgIle{Se}++ 57291 : AGTGTCAATGTAACAAATCCAAGAGGACTAGCATTAGATCCTAGAATT{Ag}gt...... : 57237 4198 : arget Intron 1 >>>> {y}<-><->LeuMetPheTrpThrAspTrpGlyLysGlu : 4207 8567 bp {!} ||||||||||||:!!|||||||||:::.!. ++{r}AspHisLeuMetPheTrpSerAspTrpGlyArgHis 57236 : ...................ag{T}GACCATCTGATGTTCTGGTCTGACTGGGGCCGTCAC : 48638 4208 : ProLysIleGluSerAlaTrpMetAsnGlyGluAspArgAsnIleLeuValPheGluAsp : 4227 ||| ! |||||| !!||| ! |||:!!|||...!!:|||!.!:!!:!!||| !!: ! ProHisIleGluArgAlaSerMetAspGlySerGluArgThrValIleValGlnAspLys 48637 : CCTCATATCGAGCGAGCCAGCATGGATGGCAGTGAGCGCACTGTCATTGTCCAGGACAAG : 48578 4228 : LeuGlyTrpProThrGlyLeuSerIleAspTyrLeuAsnAsnAspArgIleTyrTrpSer : 4247 :!! !||||||!.!||||||!!!||||||||| !|||!.. ! !||||||!::! ! IleTyrTrpProAsnGlyLeuThrIleAspTyrAlaAsnArg---LeuIleTyrPheMet 48577 : ATTTACTGGCCCAATGGCTTAACTATTGACTATGCCAACAGA---CTGATTTACTTTATG : 48521 4248 : AspPheLysGluAspValIleGluThrIleLysTyrAspGlyThrAspArgArgValIle : 4267 ||| ! ! ||| !|||!!: ! !!!.||||||||| ! !!|||||| !:!: AspAlaTyrLeuAspTyrIleAspLeuCysAsnTyrAspGlyHisHisArgArgGlnVal 48520 : GATGCCTACCTTGATTACATAGACTTGTGTAATTATGATGGACACCATCGGAGGCAGGTG : 48461 vulgar: SPP00002932_2.0 4140 4267 . JSZB01003496.1:subseq(0,100000) 57409 48458 - 290 M 56 168 S 0 2 5 0 2 I 0 8563 3 0 2 S 1 1 G 0 6 M 44 132 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 48459 57409 290 - . gene_id 10 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 57240 57409 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 57240 57409 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 57238 57239 . - . intron_id 1 ; splice_site "gt" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 48673 57239 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 48673 48674 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 48459 48672 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 48459 48672 . - . insertions 6 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 48459 57409 290 - . alignment_id 10 ; Query SPP00002932_2.0 ; Align 57410 4141 168 ; Align 48666 4198 132 ; Align 48534 4243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 835 -> 941 Target range: 91488 -> 88970 836 : PheAlaGlyTyrLeuPhePheThrAspTrp<-><-><->PheArgProAlaLysIleMet : 852 ||| ...||||||||||||:::|||||| ! ! !! ! !!|||:!: PheTyrSerTyrLeuPhePheSerAspTrpArgSerLeuSerGlyGluProLysValGlu 91488 : ttttatagttatttatttttctcagattgGAGGAGCCTTTCTGGGGAACCTAAGGTGGAA : 91431 853 : ArgAlaTrpSerAspGlySerHisLeuLeuProValIleAsnThrThrLeuGlyTrpPro : 872 ||||||!::! !||||||!!!:!!! ! ! !:!!:!!!!.|||! !|||||||||||| ArgAlaPheMetAspGlyThrAsnArgLysGluLeuValLysThrLysLeuGlyTrpPro 91430 : AGGGCTTTCATGGATGGCACCAACCGTAAGGAGTTGGTAAAAACAAAGCTGGGATGGCCC : 91371 873 : AsnGlyLeuAlaIleAspTrpAlaAlaSerArgLeuTyrTrpValAspAlaTyrPheAsp : 892 !|||:!!.!!:!!||| !!.!:!!!.!|||:!!||||||||||||..! !|||:!! AlaGlyIleThrLeuAspMetValSerLysArgValTyrTrpValAspCysArgPheAsn 91370 : GCTGGGATAACTCTCGACATGGTATCAAAGCGTGTTTACTGGGTTGACTGCCGTTTTAAT : 91311 893 : LysIleGluHisSerThrPheAspGlyLeuAsp{Ar} >>>> Target Intron 1 : 904 ! |||||| ! !|||!:!||||||:!!.!.{||} 2188 bp TyrIleGluThrValThrTyrAspGlyIleGln{Ar}++ 91310 : TACATTGAGACTGTAACTTATGATGGAATTCAA{AG}gt..................... : 91271 905 : >>>> {g}ArgArgLeuGlyHisIleGluGlnMet<->ThrHisProPheGlyLeuAla : 920 {|}!:!! !:!! !||| !! ..!:!: !!||||||||||||:!!::! ++{g}LysThrValIleHisGlyGlySerLeuIleProHisProPheGlyIleSer 91270 : ....ag{G}AAGACAGTAATTCATGGAGGCTCACTTATTCCTCATCCCTTTGGAATAAGC : 89036 921 : IlePheGlyGluHisLeuPhePheThrAspTrpArgLeuGlyAlaIleIleArgValArg : 940 :!:|||! !.!.|||:!!|||||||||||||||! ! ! !|||:!!!!:!:!!.!!.! LeuPheGluAsnHisIlePhePheThrAspTrpThrLysMetAlaValMetLysAlaAsn 89035 : TTGTTTGAAAATCACATATTCTTTACTGATTGGACAAAGATGGCAGTAATGAAGGCAAAC : 88976 941 : Lys : 941 ||| Lys 88975 : AAG : 88971 vulgar: SPP00002932_2.0 835 941 . JSZB01003496.1:subseq(0,100000) 91488 88970 - 215 M 10 30 G 0 9 M 58 174 S 0 2 5 0 2 I 0 2184 3 0 2 S 1 1 M 9 27 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 88971 91488 215 - . gene_id 11 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 91274 91488 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 91274 91488 . - . insertions 9 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 91272 91273 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 89086 91273 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 89086 89087 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 88971 89085 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 88971 89085 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 88971 91488 215 - . alignment_id 11 ; Query SPP00002932_2.0 ; Align 91489 836 30 ; Align 91450 846 174 ; Align 89085 905 27 ; Align 89055 914 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 2459 -> 2589 Target range: 72992 -> 48455 2460 : ValIleAlaSerGlyIleGlyThrAlaAspGlyIleAlaPheAspTrpIleThrArgArg : 2479 :!!! !|||..! !!:!: !!:!!.!!!:.!!:!:.!!||||||||||||:!!!:!!.! LeuThrAlaAspArgValGlnSerValGluSerLeuThrPheAspTrpIleSerLysAsn 72992 : CTCACAGCTGACAGGGTGCAAAGTGTTGAAAGTTTGACTTTTGATTGGATTTCAAAGAAT : 72935 2480 : IleTyrTyrSerAspTyrLeuAsnGlnMetIleAsnSerMet<->AlaGluAspGlySer : 2498 :!!|||!::!!!||| ! ! !!:!!! :!!!:! !!!: !! ||| !||| LeuTyrTrpThrAspAlaSerTyrLysSerValSerValIleArgLeuValAspLysSer 72934 : CTTTATTGGACGGATGCGTCTTACAAAAGTGTCAGTGTCATAAGGCTAGTTGATAAATCG : 72875 2499 : AsnArgThrValIleAlaArgValProLysProArgAlaIleValLeuAspProCysGln : 2518 !..||| !:!!:!! !!.!:!! !!!.|||||||||||||||:!! !!||| ! ArgArgGluIleValGlnAsnLeuAsnAsnProArgAlaIleValValHisProIleAla 72874 : AGACGTGAAATAGTCCAGAATTTAAATAATCCACGAGCAATCGTAGTTCATCCTATTGCT : 72815 2519 : {Gl} >>>> Target Intron 1 >>>> {y}<-><->TyrLeuTyrTrpAlaAsp : 2525 {||} 24138 bp {|} :!!!:!|||:!!||| {Gl}++ ++{y}AspHisLeuMetPheTrpSerAsp 72814 : {GG}gt.........................ag{T}GACCATCTGATGTTCTGGTCTGAC : 48650 2526 : TrpAspThrHisAlaLysIleGluArgAlaThrLeuGlyGlyAsnPheArgValProIle : 2545 |||! ! !||| !! ! ||||||||||||!:!:!!! !|||!:! |||..! !||| TrpGlyArgHisProHisIleGluArgAlaSerMetAspGlySerGluArgThrValIle 48649 : TGGGGCCGTCACCCTCATATCGAGCGAGCCAGCATGGATGGCAGTGAGCGCACTGTCATT : 48590 2546 : ValAsnSerSerLeuValMetProSerGlyLeuThrLeuAspTyrGluGluAspLeuLeu : 2565 |||.!...!!.!:!! ! !|||!:!|||||||||:!!||||||! .!. |||:!! ValGlnAspLysIleTyrTrpProAsnGlyLeuThrIleAspTyrAlaAsnArgLeuIle 48589 : GTCCAGGACAAGATTTACTGGCCCAATGGCTTAACTATTGACTATGCCAACAGACTGATT : 48530 2566 : TyrTrpValAspAlaSerLeuGlnArgIleGluArgSerThrLeuThrGlyValAspArg : 2585 |||!:::!!||||||! !|||.!. !|||!!: !!!!!.!! ! !||| ! !!||| TyrPheMetAspAlaTyrLeuAspTyrIleAspLeuCysAsnTyrAspGlyHisHisArg 48529 : TACTTTATGGATGCCTACCTTGATTACATAGACTTGTGTAATTATGATGGACACCATCGG : 48470 2586 : GluValIleVal : 2589 ..! !:!::!! ArgGlnValIle 48469 : AGGCAGGTGATA : 48456 vulgar: SPP00002932_2.0 2459 2589 . JSZB01003496.1:subseq(0,100000) 72992 48455 - 197 M 34 102 G 0 3 M 25 75 S 0 2 5 0 2 I 0 24134 3 0 2 S 1 1 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 48456 72992 197 - . gene_id 12 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 72811 72992 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 72811 72992 . - . insertions 3 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 72809 72810 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 48673 72810 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 48673 48674 . - . intron_id 0 ; splice_site "AG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 48456 48672 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 48456 48672 . - . insertions 6 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 48456 72992 197 - . alignment_id 12 ; Query SPP00002932_2.0 ; Align 72993 2460 102 ; Align 72888 2494 75 ; Align 48666 2520 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 3731 -> 3793 Target range: 64674 -> 64479 3732 : CysIleProLeuArgTrpGlnCysAspGlyGlnAsnAspCysGlyAspAsnSerAspGlu : 3751 ||||||||| !!!!|||!!.|||||| !!!.!!.|||||| !|||..!||||||||| CysIleProAlaSerTrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGlu 64674 : TGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAG : 64617 3752 : GluAsnCys<-><-><->AlaProArgGluCysThrGluSerGluPheArgCysValAsn : 3768 :!!|||||| ||||||! !...|||:!!! !||| ! |||! !|||! !||| GlnAsnCysProThrGlnAlaProThrSerCysSerAlaSerTyrPheThrCysAspAsn 64616 : CAGAACTGCCCCACCCAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAAT : 64557 3769 : GlnGlnCysIleProSerArgTrpIleCysAspHisTyrAsnAspCysGlyAspAsnSer : 3788 ! !:!|||||||||!.!!.!|||:!!|||||| !!|||||||||! !|||..!||| TyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySer 64556 : TACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCT : 64497 3789 : AspGluArgAspCys : 3793 ||||||!:!:!!||| AspGluLysAsnCys 64496 : GATGAAAAGAACTGT : 64480 vulgar: SPP00002932_2.0 3731 3793 . JSZB01003496.1:subseq(0,100000) 64674 64479 - 190 M 23 69 G 0 9 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64480 64674 190 - . gene_id 13 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64480 64674 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64480 64674 . - . insertions 9 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64480 64674 190 - . alignment_id 13 ; Query SPP00002932_2.0 ; Align 64675 3732 69 ; Align 64597 3755 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 189 Query range: 65 -> 142 Target range: 64716 -> 64479 66 : ThrCysGlnGlnGlyTyrPheLysCysGlnSerGluGlyGlnCysIleProAsnSerTrp : 85 :!!||| .....! |||! ||| !! !||| !||||||||| !|||||| SerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAlaSerTrp 64716 : TCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGCTGG : 64659 86 : ValCysAspGlnAspGlnAspCysAspAspGlySerAspGluArgGlnAspCysSerGln : 105 !||||||:!! !!:!!|||||| |||||||||||||||!:!.!. ! !!!!||| HisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysProThrGln 64658 : CACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCCACCCAA : 64599 106 : <-><->SerThrCysSerSerHisGlnIleThrCysSerAsnGlyGlnCysIleProSer : 123 !!!:!!||||||:!! ! ! .!!||||||..!||| !!:!|||||||||!.! AlaProThrSerCysSerAlaSerTyrPheThrCysAspAsnTyrArgCysIleProLys 64598 : GCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAATTACCGGTGTATCCCAAAG : 64539 124 : GluTyrArgCysAspHisValArgAspCysProAspGlyAlaAspGluAsnAspCys : 142 .!.!::! !|||||| ! !!.!|||||| !||||||:!!||||||!!.:!!||| AsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGluLysAsnCys 64538 : AACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAGAACTGT : 64480 vulgar: SPP00002932_2.0 65 142 . JSZB01003496.1:subseq(0,100000) 64716 64479 - 189 M 40 120 G 0 6 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64480 64716 189 - . gene_id 14 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64480 64716 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64480 64716 . - . insertions 6 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64480 64716 189 - . alignment_id 14 ; Query SPP00002932_2.0 ; Align 64717 66 120 ; Align 64591 106 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 1107 -> 1183 Target range: 64716 -> 64479 1108 : SerCysLeuAspThrGlnTyrThrCysAspAsn<->HisGlnCysIleSerLysAsnTrp : 1126 |||||| !..!:!! !!:!||||||! !:!! !|||||| !! !:!||| SerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAlaSerTrp 64716 : TCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGCTGG : 64659 1127 : ValCysAspThrAspAsnAspCysGlyAspGlySerAspGluLysAsnCys<-><->Asn : 1144 !||||||! ! !!!!.|||||| !|||||||||||||||:!!|||||| .!. HisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysProThrGln 64658 : CACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCCACCCAA : 64599 1145 : SerThrGluThrCysGlnProSerGlnPheAsnCysProAsnHisArgCysIleAspLeu : 1164 :!! !! :!!|||... !!||| ! |||!.!||| !|||:!!||||||||| ! AlaProThrSerCysSerAlaSerTyrPheThrCysAspAsnTyrArgCysIleProLys 64598 : GCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAATTACCGGTGTATCCCAAAG : 64539 1165 : SerPheValCysAspGlyAspLysAspCysValAspGlySerAspGluValGlyCys : 1183 !:!!:::!!|||||| !|||!!.||||||! !||||||||||||||| !..!||| AsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGluLysAsnCys 64538 : AACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAGAACTGT : 64480 vulgar: SPP00002932_2.0 1107 1183 . JSZB01003496.1:subseq(0,100000) 64716 64479 - 185 M 11 33 G 0 3 M 25 75 G 0 6 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64480 64716 185 - . gene_id 15 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64480 64716 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64480 64716 . - . insertions 9 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64480 64716 185 - . alignment_id 15 ; Query SPP00002932_2.0 ; Align 64717 1108 33 ; Align 64681 1119 75 ; Align 64600 1144 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 2963 -> 3068 Target range: 61253 -> 17414 2964 : ArgCysIleProGlnSerTrpValCysAspGlyAspValAspCysThrAspGlyTyrAsp : 2983 !.!||||||! !::!.!!|||:!!|||||||||||| !||||||! !||| ! !||| AsnCysIleHisArgGlyTrpLeuCysAspGlyAspAsnAspCysMetAspMetSerAsp 61253 : AACTGCATTCACAGAGGGTGGCTCTGTGATGGGGACAATGACTGCATGGATATGAGTGAT : 61196 2984 : GluAsnGlnAsnCysThrArgArg<->ThrCysSerGluAsnGluPheThrCys<->Gly : 3001 |||!!..!. ! !|||!:!! ! !||| !......:!!!:: !||| ||| GluLysAspCysProThrGlnProPheTyrCysLeuSerGlyGlnTrpHisCysProGly 61195 : GAGAAGGACTGTCCCACTCAGCCCTTTTACTGCCTCAGTGGGCAATGGCATTGCCCCGGC : 61136 3002 : TyrGlyLeuCysIleProLysIlePheArgCysAspArgHisAsnAspCysGlyAspTyr : 3021 |||.!!:!!|||:!: ! !! ! !|||||| !! !::!|||||| !:!! TyrSerIleCysValAsnLeuSerAlaValCysAspGlyIleSerAspCysProAsnGly 61135 : TATAGCATCTGTGTGAATCTGAGTGCAGTGTGTGATGGCATCTCTGACTGCCCCAATGGG : 61076 3022 : SerAspGluArgGlyCysLeu{T} >>>> Target Intron 1 >>>> {yr}Gln : 3030 !!!|||||| ! !! !! !{ } 43518 bp { } ! ThrAspGluSerProPheCys{A}++ -+{rg}Thr 61075 : ACAGATGAGTCCCCATTTTGC{A}gt.........................tg{GA}ACA : 17531 3031 : ThrCysGlnGlnAsnGlnPheThrCysGlnAsnGlyArgCysIleSerLysThrPheVal : 3050 !|||.!....::!:!!||||||||| !:!|||!.!|||||||||:!! !!!.:!! ArgCysAspSerSerLysPheThrCysPheSerGlyHisCysIleSerGluGlnLeuLeu 17530 : CGGTGTGATAGTTCCAAATTCACCTGCTTCAGCGGGCACTGCATCTCGGAGCAGTTGCTG : 17471 3051 : CysAspGluAspAsnAspCysGlyAspGlySerAspGluLeuMetHisLeuCys : 3068 ||||||.!.:!!:!!|||||||||||||||||||||||||||! !:!!||| CysAspHisAsnAspAspCysGlyAspGlySerAspGluLeuThrIleValCys 17470 : TGTGACCATAACGATGACTGTGGTGATGGCAGTGATGAGCTTACAATTGTCTGT : 17415 vulgar: SPP00002932_2.0 2963 3068 . JSZB01003496.1:subseq(0,100000) 61253 17414 - 185 M 28 84 G 0 3 M 9 27 G 0 3 M 28 84 S 0 1 5 0 2 I 0 43514 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 17415 61253 185 - . gene_id 16 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 61052 61253 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 61052 61253 . - . insertions 6 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 61050 61051 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 17534 61051 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 17534 17535 . - . intron_id 0 ; splice_site "TG" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 17415 17533 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 17415 17533 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 17415 61253 185 - . alignment_id 16 ; Query SPP00002932_2.0 ; Align 61254 2964 84 ; Align 61167 2992 27 ; Align 61137 3001 84 ; Align 17532 3030 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 3806 -> 3874 Target range: 64683 -> 64485 3807 : SerGlyHisCysValHisSerGluLeuLysCysAspGlySerAlaAspCysLeuAspAla : 3826 .!!||| |||:!!! !:!!...! ! ! |||||| ! ! !||||||||||||!.! GlyGlyGlyCysIleProAlaSerTrpHisCysAspLysHisLysAspCysLeuAspGly 64683 : GGAGGAGGGTGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGC : 64626 3827 : SerAspGluAlaAspCysProThrArgPheProAspGlyAlaTyrCysGlnAlaThrMet : 3846 ||||||||| !:!!|||||||||!:! ||| !..! |||...|||:!! SerAspGluGlnAsnCysProThrGlnAlaProThrSer------CysSerAlaSerTyr 64625 : AGTGATGAGCAGAACTGCCCCACCCAAGCACCCACTTCC------TGCTCTGCATCCTAC : 64572 3847 : PheGluCysLysAsnHisValCysIleProProTyrTrpLysCysAspGlyAspAspAsp : 3866 ||| ||| ! |||:!! !||||||||| ! !!||| |||||| !|||:!!||| PheThrCysAspAsnTyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAsp 64571 : TTCACTTGTGATAATTACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGAT : 64512 3867 : CysGlyAspGlySerAspGluGlu : 3874 |||! !|||||||||||||||:!! CysGluAspGlySerAspGluLys 64511 : TGTGAAGATGGTTCTGATGAAAAG : 64486 vulgar: SPP00002932_2.0 3806 3874 . JSZB01003496.1:subseq(0,100000) 64683 64485 - 181 M 33 99 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64486 64683 181 - . gene_id 17 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64486 64683 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64486 64683 . - . insertions 0 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64486 64683 181 - . alignment_id 17 ; Query SPP00002932_2.0 ; Align 64684 3807 99 ; Align 64585 3842 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 312 -> 383 Target range: 59886 -> 59676 313 : SerAlaLeuAsnCysGlnTyrGlnCysHisGluThrProTyrGlyGlyAlaCysPheCys : 332 ||| ! !..!||| :!!|||||| !:!! !|||!:!|||!.! !||| !!||| SerAsnAlaGlyCysThrHisGlnCysIleGlnGlyProPheGlyAlaGlnCysValCys 59886 : TCCAATGCTGGTTGTACTCACCAGTGTATTCAAGGACCCTTTGGGGCTCAATGTGTCTGT : 59829 333 : ProProGlyTyrIleIleAsnHisAsnAspSerArgThrCysValGluPheAspAspCys : 352 ||| !||||||:!::!! !|||||||||!:!||||||! !!!:.!.|||!!:||| ProPheGlyTyrLeuLeu---AlaAsnAspSerLysThrCysGluAspIleAspGluCys 59828 : CCATTTGGATACCTGCTT---GCCAATGATTCTAAGACCTGTGAAGATATAGATGAATGT : 59772 353 : GlnIleTrpGlyIleCysAspGlnLysCysGluSerArgProGlyArgHisLeuCysHis : 372 .!.||| |||.!!|||..!||| ! ||| ! !:!! ! !||| ! !! !||| AspIleProGlyPheCysSerGlnHisCysTyrAsnThrArgGlySerPheArgCysTrp 59771 : GACATTCCAGGCTTTTGTAGCCAGCACTGTTACAATACGAGAGGTTCTTTCCGGTGCTGG : 59712 373 : CysGluGluGlyTyrIleLeuGluArgGlyGln : 383 |||!!::!!! !|||!!:|||!!: !! !||| CysAspLysGluTyrMetLeuAspAlaAspGln 59711 : TGTGACAAAGAATACATGTTAGACGCTGACCAG : 59677 vulgar: SPP00002932_2.0 312 383 . JSZB01003496.1:subseq(0,100000) 59886 59676 - 163 M 26 78 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 59677 59886 163 - . gene_id 18 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 59677 59886 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 59677 59886 . - . insertions 0 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 59677 59886 163 - . alignment_id 18 ; Query SPP00002932_2.0 ; Align 59887 313 78 ; Align 59809 340 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 2147 -> 2265 Target range: 92673 -> 91281 2148 : ArgGlyIleAlaValAspTrpValAlaGlyAsnLeuTyrPheThrAsnAlaPheValSer : 2167 ..!..!:!:||||||||||||:!! !..!!!.||||||.!...!.!..!! |||!:! GluAsnLeuAlaValAspTrpIleAsnAsnLysLeuTyrLeuValGluThrLysValAsn 92673 : GAAAATCTGGCTGTGGACTGGATTAATAATAAACTTTATCTGGTGGAGACCAAGGTCAAC : 92616 2168 : GluThrLeuIleGluValLeuArgIleAsnThrThrTyrArgArgValLeuLeuLysVal : 2187 ... |||||||||:!!!.!:!::!! !!:! !!||| !:!!|||:!!! !! ! Arg------IleGluValValAsnLeuAspGlySerAsnArgValIleLeuIleThrGlu 92615 : CGC------ATAGAAGTGGTCAATTTGGATGGAAGCAACCGTGTTATCCTTATAACAGAA : 92562 2188 : ThrValAspMetProArgHisIleValValAspProLysAsn{Ar} >>>> Target : 2202 !.!:!!! |||||| |||!.!:!!||||||! !{ !} 103 AsnLeuGlyHisProArgGlyIleAlaLeuAspProThrLeu{Gl}++ 92561 : AACTTAGGGCATCCTAGAGGAATTGCCCTGGACCCAACTCTT{GG}gt............ : 92513 2203 : Intron 1 >>>> {g}TyrLeuPheTrpAlaAspTyr<-><-><->GlyGlnArgPro : 2213 5 bp {!}|||||||||::::::|||::: ..! !..!||| ++{y}TyrLeuPhePheSerAspTrpArgSerLeuSerGlyGluPro 92512 : .............ag{t}tatttatttttctcagattgGAGGAGCCTTTCTGGGGAACCT : 91440 2214 : LysIleGluArgSerPheLeuAspCysThrAsnArgThrValLeuValSerGluGlyIle : 2233 |||:!:||||||:!!|||:!!||| !!|||||||||! !! !||||||!.! ! !:!: LysValGluArgAlaPheMetAspGlyThrAsnArgLysGluLeuValLysThrLysLeu 91439 : AAGGTGGAAAGGGCTTTCATGGATGGCACCAACCGTAAGGAGTTGGTAAAAACAAAGCTG : 91380 2234 : ValThrProArgGlyLeuAlaValAspArgSerAspGlyTyrValTyrTrpValAspAsp : 2253 ! ! !||| !|||:!!.!!:!!|||! ! !... ! !||||||||||||||| ! GlyTrpProAlaGlyIleThrLeuAspMetValSerLysArgValTyrTrpValAspCys 91379 : GGATGGCCCGCTGGGATAACTCTCGACATGGTATCAAAGCGTGTTTACTGGGTTGACTGC : 91320 2254 : SerLeuAspIleIleAlaArgIleArgIleAsnGly : 2265 !!!!!:!! !|||! !! !:!!! ! !:!!||| ArgPheAsnTyrIleGluThrValThrTyrAspGly 91319 : CGTTTTAATTACATTGAGACTGTAACTTATGATGGA : 91282 vulgar: SPP00002932_2.0 2147 2265 . JSZB01003496.1:subseq(0,100000) 92673 91281 - 149 M 21 63 G 2 0 M 31 93 S 0 2 5 0 2 I 0 1031 3 0 2 S 1 1 M 7 21 G 0 9 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 91282 92673 149 - . gene_id 19 ; sequence SPP00002932_2.0 ; gene_orientation + JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 92516 92673 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 92516 92673 . - . insertions 0 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice5 92514 92515 . - . intron_id 1 ; splice_site "GT" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local intron 91481 92515 . - . intron_id 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local splice3 91481 91482 . - . intron_id 0 ; splice_site "ag" JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 91282 91480 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 91282 91480 . - . insertions 9 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 91282 92673 149 - . alignment_id 19 ; Query SPP00002932_2.0 ; Align 92674 2148 63 ; Align 92611 2171 93 ; Align 91480 2203 21 ; Align 91450 2210 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 153 -> 218 Target range: 64683 -> 64476 154 : AsnGlyAlaCysTyrAsnThrSerGlnLysCysAspTrpLysValAspCysArgAspSer : 173 ...|||!.!||| ! !.!!||| ! ! |||||| ! ! !|||||| !|||.!! GlyGlyGlyCysIleProAlaSerTrpHisCysAspLysHisLysAspCysLeuAspGly 64683 : GGAGGAGGGTGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGC : 64626 174 : SerAspGluIleAsnCys<-><-><-><->ThrGluIleCysLeuHisAsnGluPheSer : 189 ||||||||| |||||| !! !|||! ! ::! ! |||!!! SerAspGluGlnAsnCysProThrGlnAlaProThrSerCysSerAlaSerTyrPheThr 64625 : AGTGATGAGCAGAACTGCCCCACCCAAGCACCCACTTCCTGCTCTGCATCCTACTTCACT : 64566 190 : CysGlyAsnGlyGluCysIleProArgAlaTyrValCysAspHisAspAsnAspCysGln : 209 |||! !||| !..!|||||||||!:! !!:::!!|||||| ||||||||||||:!! CysAspAsnTyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAspCysGlu 64565 : TGTGATAATTACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAA : 64506 210 : AspGlySerAspGluHisAlaCysAsn : 218 ||||||||||||||| ! !|||!:! AspGlySerAspGluLysAsnCysSer 64505 : GATGGTTCTGATGAAAAGAACTGTAGT : 64477 vulgar: SPP00002932_2.0 153 218 . JSZB01003496.1:subseq(0,100000) 64683 64476 - 143 M 26 78 G 0 12 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64477 64683 143 - . gene_id 20 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64477 64683 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64477 64683 . - . insertions 12 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64477 64683 143 - . alignment_id 20 ; Query SPP00002932_2.0 ; Align 64684 154 78 ; Align 64594 180 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 3853 -> 3915 Target range: 64674 -> 64488 3854 : CysIleProProTyrTrpLysCysAspGlyAspAspAspCysGlyAspGlySerAspGlu : 3873 ||||||||| !! !||| ! |||||| ! !! ! |||||| !||||||||||||||| CysIleProAlaSerTrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGlu 64674 : TGCATCCCTGCCAGCTGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAG : 64617 3874 : GluLeuHisLeuCysLeuAspValProCysAsnSerProAsnArgPheArgCysAspAsn : 3893 :!! ! !! ! !! !! ! !!! ! !||| !!::! !|||! !||||||||| GlnAsnCysProThrGlnAlaProThrSerCysSerAlaSerTyrPheThrCysAspAsn 64616 : CAGAACTGCCCCACCCAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGTGATAAT : 64557 3894 : AsnArgCysIleTyrSerHisGluValCysAsnGlyValAspAspCysGlyAspGlyThr : 3913 !!||||||||| !.!:!! !:!!|||:!! !! !:!!||||||! !||||||:!! TyrArgCysIleProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySer 64556 : TACCGGTGTATCCCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCT : 64497 3914 : AspGlu : 3915 |||||| AspGlu 64496 : GATGAA : 64489 vulgar: SPP00002932_2.0 3853 3915 . JSZB01003496.1:subseq(0,100000) 64674 64488 - 140 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64489 64674 140 - . gene_id 21 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64489 64674 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64489 64674 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64489 64674 140 - . alignment_id 21 ; Query SPP00002932_2.0 ; Align 64675 3854 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 3602 -> 3653 Target range: 4847 -> 4697 3603 : AsnLysArgCysIleProGluSerTrpGlnCysAspThrPheAsnAspCysGluAspAsnSe : 3623 ::!!:!||||||||||||:!!|||||| |||||| ! ! ||||||! |||..!! SerArgArgCysIleProGlnSerTrpValCysAspGlyAspAlaAspCysAlaAspGlyTy 4847 : TCCAGGAGGTGCATCCCCCAATCTTGGGTCTGTGATGGTGATGCAGATTGTGCCGATGGCTA : 4787 3624 : rAspGluAspSerSerHisCysAlaSerArgThrCysArgProGlyGlnPheArgCysAlaA : 3644 !|||||| ! !..!:!!|||.!!!!!|||:!!||| ! !..!.!.|||! !||| !| rAspGlu---TyrGlnAsnCysThrArgArgSerCysSerGluAsnAspPheThrCysAsnA 4786 : TGATGAG---TATCAAAATTGCACCAGGAGATCTTGCTCTGAAAATGATTTCACCTGTAATA : 4727 3645 : snGlyArgCysIleProGlnAlaTrpLys : 3653 |||||! !|||:!!|||!:: !!::!:! snGlyLeuCysValProArgTrpTyrArg 4726 : ATGGACTGTGTGTCCCACGCTGGTACAGG : 4698 vulgar: SPP00002932_2.0 3602 3653 . JSZB01003496.1:subseq(0,100000) 4847 4697 - 125 M 23 69 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 4698 4847 125 - . gene_id 22 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 4698 4847 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 4698 4847 . - . insertions 0 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 4698 4847 125 - . alignment_id 22 ; Query SPP00002932_2.0 ; Align 4848 3603 69 ; Align 4779 3627 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 4140 -> 4197 Target range: 92685 -> 92514 4141 : ValMetGlnProAspGlyIleAlaValAspTrpValGlyArgHisIleTyrTrpSerAsp : 4160 ||| .!.|||!!:..!:!:||||||||||||:!!..!!.! ! :!!||| ! !!!: ValAspAspProGluAsnLeuAlaValAspTrpIleAsnAsnLysLeuTyrLeuValGlu 92685 : GTTGATGATCCAGAAAATCTGGCTGTGGACTGGATTAATAATAAACTTTATCTGGTGGAG : 92628 4161 : ValLysAsnLysArgIleGluValAlaLysLeuAspGlyArgTyrArgLysTrpLeuIle : 4180 ..!||| !!!.||||||||||||!.!!!.|||||||||!!! !!||| |||||| ThrLysValAsnArgIleGluValValAsnLeuAspGlySerAsnArgValIleLeuIle 92627 : ACCAAGGTCAACCGCATAGAAGTGGTCAATTTGGATGGAAGCAACCGTGTTATCCTTATA : 92568 4181 : SerThrAspLeuAspGlnProAlaAlaIleAlaValAsnProLysLeuGly : 4197 !!! !:!!|||! !!.||| !!.!||||||:!!:!!|||! |||||| ThrGluAsnLeuGlyHisProArgGlyIleAlaLeuAspProThrLeuGly 92567 : ACAGAAAACTTAGGGCATCCTAGAGGAATTGCCCTGGACCCAACTCTTGGG : 92515 vulgar: SPP00002932_2.0 4140 4197 . JSZB01003496.1:subseq(0,100000) 92685 92514 - 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 92515 92685 123 - . gene_id 23 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 92515 92685 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 92515 92685 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 92515 92685 123 - . alignment_id 23 ; Query SPP00002932_2.0 ; Align 92686 4141 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 2905 -> 2957 Target range: 61409 -> 61256 2906 : CysLeuAlaAspGluPheLysCys<->AspGlyGlyArgCysIleProSerGluTrpIle : 2924 |||! !||||||||||||:!!||| !!:! !||| !|||||||||.!!...||| CysHisAlaAspGluPheGlnCysGlnGluAspGlyValCysIleProGlySerTrpGlu 61409 : TGCCATGCAGATGAATTTCAGTGTCAAGAAGATGGTGTCTGCATTCCGGGGAGCTGGGAG : 61352 2925 : CysAspGlyAspAsnAspCysGlyAspMetSerAspGluAspLysArgHisGlnCysGln : 2944 ||||||||| !!:::|||||| !!: !! !...|||:!!!.!||| ||| CysAspGlyHisSerAspCys------IleLeuGlySerAspGluHisHisGlyCysGly 61351 : TGTGATGGTCACTCAGACTGC------ATCCTTGGTTCTGATGAGCACCATGGCTGTGGC : 61298 2945 : AsnGlnAsnCysSerAspSerGluPheLeuCysValAsn : 2957 !::!!.!||| ! |||.!.|||||||||! !||| ProArgThrCysLeuProSerHisPheLeuCysAspAsn 61297 : CCCAGGACCTGCCTTCCATCTCATTTCCTCTGTGACAAT : 61257 vulgar: SPP00002932_2.0 2905 2957 . JSZB01003496.1:subseq(0,100000) 61409 61256 - 110 M 8 24 G 0 3 M 18 54 G 2 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 61257 61409 110 - . gene_id 24 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 61257 61409 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 61257 61409 . - . insertions 3 ; deletions 2 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 61257 61409 110 - . alignment_id 24 ; Query SPP00002932_2.0 ; Align 61410 2906 24 ; Align 61383 2914 54 ; Align 61329 2934 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 2740 -> 2797 Target range: 17525 -> 17354 2741 : CysSerProThrAlaPheThrCysAlaAsnGlyArgCysValGlnTyrSerTyrArgCys : 2760 |||..! !:!! !||||||||| !!:!|||!.!|||:!!..! ! ..!! ! !||| CysAspSerSerLysPheThrCysPheSerGlyHisCysIleSerGluGlnLeuLeuCys 17525 : TGTGATAGTTCCAAATTCACCTGCTTCAGCGGGCACTGCATCTCGGAGCAGTTGCTGTGT : 17468 2761 : AspTyrTyrAsnAspCysGlyAspGlySerAspGluAlaGlyCysLeuPheArgAspCys : 2780 |||:!! !!:!!|||||||||||||||||||||||| ! ! !:!!! ! !!!!:! AspHisAsnAspAspCysGlyAspGlySerAspGluLeuThrIleValCysGlyGluSer 17467 : GACCATAACGATGACTGTGGTGATGGCAGTGATGAGCTTACAATTGTCTGTGGTGAGTCG : 17408 2781 : AsnAlaThrThrGluPheMetCysAsnAsnArgArgCysIleProArgGlu : 2797 :!! ! ! !|||.!.||| ::! |||!:! .!! !! !||| AspPheCys***GluLeuMetThrSerLeuArgGlnValPheGlyThrGlu 17407 : GACTTTTGTTAGGAGCTGATGACGTCTTTACGCCAAGTGTTTGGTACAGAA : 17355 vulgar: SPP00002932_2.0 2740 2797 . JSZB01003496.1:subseq(0,100000) 17525 17354 - 106 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 17355 17525 106 - . gene_id 25 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 17355 17525 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 17355 17525 . - . insertions 0 ; deletions 0 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 17355 17525 106 - . alignment_id 25 ; Query SPP00002932_2.0 ; Align 17526 2741 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002932_2.0 # Protein # low density lipoprotein receptor-related protein 2 (LRP2) # Human Target: JSZB01003496.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD3938, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 1146 -> 1222 Target range: 64719 -> 64479 1147 : GluThrCysGlnProSerGlnPheAsnCysProAsn<->HisArgCysIleAspLeuSer : 1165 .!.:!!||| !!||| !|||!.!||| !:!! !!|||||| ! !||| AsnSerCysAlaSerSerAlaPheThrCysGlyHisGlyGlyGlyCysIleProAlaSer 64719 : AATTCCTGTGCCTCTTCAGCATTCACCTGTGGCCATGGAGGAGGGTGCATCCCTGCCAGC : 64662 1166 : PheValCysAspGlyAspLysAspCysValAspGlySerAspGluValGlyCys<-><-> : 1184 !:: !|||||| ! !!|||||||||:!!||||||||||||||| !..!||| TrpHisCysAspLysHisLysAspCysLeuAspGlySerAspGluGlnAsnCysProThr 64661 : TGGCACTGTGACAAGCACAAAGATTGTTTGGATGGCAGTGATGAGCAGAACTGCCCCACC : 64602 1185 : <-><->ValLeuAsnCysThrAlaSerGlnPheLysCysAlaSerGlyAspLysCysIle : 1201 ! !::!|||:!!|||||| ! |||! ||| ..!..! !!::!|||||| GlnAlaProThrSerCysSerAlaSerTyrPheThrCys---AspAsnTyrArgCysIle 64601 : CAAGCACCCACTTCCTGCTCTGCATCCTACTTCACTTGT---GATAATTACCGGTGTATC : 64545 1202 : GlyValThrAsnArgCysAspGlyValPheAspCysSerAspAsnSerAspGluAlaGly : 1221 ! !!.! ! !|||||| !! ! !||||||..!|||..!||||||||| !..! ProLysAsnTrpLeuCysAspThrAspAsnAspCysGluAspGlySerAspGluLysAsn 64544 : CCAAAGAACTGGCTCTGTGACACAGATAATGATTGTGAAGATGGTTCTGATGAAAAGAAC : 64485 1222 : Cys : 1222 ||| Cys 64484 : TGT : 64480 vulgar: SPP00002932_2.0 1146 1222 . JSZB01003496.1:subseq(0,100000) 64719 64479 - 105 M 12 36 G 0 3 M 25 75 G 0 12 M 11 33 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local gene 64480 64719 105 - . gene_id 26 ; sequence SPP00002932_2.0 ; gene_orientation . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local cds 64480 64719 . - . JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local exon 64480 64719 . - . insertions 15 ; deletions 1 JSZB01003496.1:subseq(0,100000) exonerate:protein2genome:local similarity 64480 64719 105 - . alignment_id 26 ; Query SPP00002932_2.0 ; Align 64720 1147 36 ; Align 64681 1159 75 ; Align 64594 1184 33 ; Align 64561 1196 81 # --- END OF GFF DUMP --- # -- completed exonerate analysis