Command line: [exonerate -m p2g --showtargetgff -q GPx8.fa -t GPx8.subseq.fa]
Hostname: [ws116037u]

C4 Alignment:
------------
         Query: SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Human 
        Target: JSZB01002610.1:subseq(330000,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 956
   Query range: 0 -> 209
  Target range: 54415 -> 58678

     1 : MetGluProLeuAlaAlaTyrProLeuLysCysSerGlyProArgAlaLysValPheAla :    20
         ||||||||||||  !||||||||||||!:!||||||||||||!:!|||||||||||||||
         MetGluProLeuIleAlaTyrProLeuArgCysSerGlyProLysAlaLysValPheAla
 54416 : ATGGAGCCTCTCATAGCTTACCCTTTAAGATGTTCAGGGCCCAAAGCAAAAGTATTTGCA : 54473

    21 : ValLeuLeuSerIleValLeuCysThrValThrLeuPheLeuLeuGlnLeuLysPheLeu :    40
         ||||||||||||!!:|||||||||||||||! !|||||||||||||||||||||||||||
         ValLeuLeuSerMetValLeuCysThrValMetLeuPheLeuLeuGlnLeuLysPheLeu
 54474 : GTTTTGCTGTCTATGGTTCTATGCACTGTGATGCTATTTCTTCTACAATTAAAATTCCTA : 54533

    41 : LysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArgThrVal :    60
         !:!|||:!!|||||||||||||||.!!|||||||||||||||||| ! ||||||||||||
         ArgProGlnIleAsnSerPheTyrThrPheGluValLysAspAlaHisGlyArgThrVal
 54534 : AGGCCTCAAATCAACAGCTTTTATACCTTTGAAGTGAAGGATGCACACGGAAGAACGGTT : 54593

    61 : SerLeuGluLysTyrLysGlyLys  >>>> Target Intron 1 >>>>  ValSerL :    71
         ||||||||||||!:!||||||!:!            548 bp           |||:!!|
         SerLeuGluLysPheLysGlyArg++                         ++ValAlaL
 54594 : TCTCTGGAAAAGTTTAAAGGCAGAgt.........................agGTTGCAC : 55174

    72 : euValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuGlyLeuLysG :    91
         ||||||||||||||||||||||||||||||||||||||||||||||||||!.!|||:!!|
         euValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeuAlaLeuGlnG
 55175 : TAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTAGCACTGCAGG : 55234

    92 : luLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheProCysAsnGlnP :   111
         |||||||||||||||||||||||! !||||||||||||||||||||||||||||||||||
         luLeuHisLysGluPheGlyProPheHisPheSerValLeuAlaPheProCysAsnGlnP
 55235 : AACTGCACAAAGAGTTTGGACCATTCCACTTCAGCGTCTTGGCTTTTCCATGCAATCAGT : 55294

   112 : heGlyGluSerGluProArgProSerLysGluValGluSerPheAlaArgLysAsnTyrG :   131
         ||||||||||||||||||||||||||||||||:!!! !||||||||||||!!.|||||||
         heGlyGluSerGluProArgProSerLysGluIleValSerPheAlaArgAsnAsnTyrG
 55295 : TTGGAGAATCGGAACCCCGCCCAAGCAAGGAAATAGTGTCTTTTGCAAGAAATAACTACG : 55354

   132 : lyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGlyGluProAlaP :   151
         |||||||||||||||||||||||||||||||||||||||||||||||!.!||||||||||
         lyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluAlaGluProAlaP
 55355 : GAGTaacattccccatcttccacaagaTTAAGATTCTAGGATCTGAAGCAGAACCTGCAT : 55414

   152 : heArgPheLeuVal{A}  >>>> Target Intron 2 >>>>  {sp}SerSerLysL :   160
         ||||||||||||||{|}           3088 bp           {||}||||||||||
         heArgPheLeuVal{A}++                         ++{sp}SerSerLysL
 55415 : TTAGATTTCTTGTT{G}gt.........................ag{AT}TCTTCGAAAA : 58529

   161 : ysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGlnValValLysP :   180
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||!!.!
         ysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGlnValValAsnS
 58530 : AGGAACCAAGGTGGAATTTTTGGAAATATCTGGTCAACCCTGAGGGTCAAGTTGTGAACT : 58589

   181 : heTrpLysProGluGluProIleGluValIleArgProAspIleAlaAlaLeuValArgG :   200
          !|||!:!||||||||||||:!!|||||||||||||||!!:||||||||||||:!!||||
         erTrpArgProGluGluProValGluValIleArgProGluIleAlaAlaLeuIleArgG
 58590 : CCTGGAGGCCAGAGGAACCCGTTGAAGTTATCAGGCCTGAGATAGCAGCTCTGATTAGAC : 58649

   201 : lnValIleIleLysLysLysGluAspLeu :   209
         ||:::||||||||||||||||||||||||
         lnMetIleIleLysLysLysGluAspLeu
 58650 : AAAtgatcataaaaaagaaagaggatcTA : 58678

vulgar: SPP00000041_2.0 0 209 . JSZB01002610.1:subseq(330000,100000) 54415 58678 + 956 M 68 204 5 0 2 I 0 544 3 0 2 M 87 261 S 0 1 5 0 2 I 0 3084 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	gene	54416	58678	956	+	.	gene_id 1 ; sequence SPP00000041_2.0 ; gene_orientation +
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	cds	54416	54619	.	+	.	
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	exon	54416	54619	.	+	.	insertions 0 ; deletions 0
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	splice5	54620	54621	.	+	.	intron_id 1 ; splice_site "GT"
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	intron	54620	55167	.	+	.	intron_id 1
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	splice3	55166	55167	.	+	.	intron_id 0 ; splice_site "AG"
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	cds	55168	55429	.	+	.	
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	exon	55168	55429	.	+	.	insertions 0 ; deletions 0
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	splice5	55430	55431	.	+	.	intron_id 2 ; splice_site "GT"
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	intron	55430	58517	.	+	.	intron_id 2
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	splice3	58516	58517	.	+	.	intron_id 1 ; splice_site "AG"
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	cds	58518	58678	.	+	.	
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	exon	58518	58678	.	+	.	insertions 0 ; deletions 0
JSZB01002610.1:subseq(330000,100000)	exonerate:protein2genome:local	similarity	54416	58678	956	+	.	alignment_id 1 ; Query SPP00000041_2.0 ; Align 54416 1 204 ; Align 55168 69 261 ; Align 58520 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis