Command line: [exonerate -m p2g --showtargetgff -q GPx7.fa -t GPx7.subseq.fa]
Hostname: [ws116037u]

C4 Alignment:
------------
         Query: SPP00000040_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Human 
        Target: JSZB01029812.1:subseq(0,75000) Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 891
   Query range: 0 -> 187
  Target range: 64287 -> 57015

     1 : MetValAlaAlaThrValAlaAlaAlaTrpLeuLeuLeuTrpAlaAlaAlaCysAlaGln :    20
         :!::!!!.!|||.!!:!!!.!||||||||||||||||||! !|||!.!||||||||||||
         ValMetValAlaAlaLeuValAlaAlaTrpLeuLeuLeuSerAlaValAlaCysAlaGln
 64287 : GTCATGGTGGCTGCACTGGTGGCGGCGTGGCTGCTCCTGTCGGCTGTGGCCTGCGCGCAG : 64230

    21 : GlnGluGlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeu :    40
         !:!|||!:!|||||||||||||||||||||||||||||||||||||||||||||||||||
         ArgGluArgAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuValSerLeu
 64229 : CGGGAGCGGGACTTCTACGACTTCAAGGCGGTGAACATCCGGGGCAAGCTGGTGTCGCTG : 64170

    41 : GluLysTyrArgGlySer  >>>> Target Intron 1 >>>>  ValSerLeuValV :    51
         ||||||||||||||||||           5408 bp           |||||||||||||
         GluLysTyrArgGlySer++                         ++ValSerLeuValV
 64169 : GAGAAGTACCGCGGGTCGgt.........................agGTTTCCCTGGTGG : 58729

    52 : alAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuG :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuG
 58728 : TGAACGTGGCTAGTGAGTGCGGCTTCACAGACCAGCACTACCGGGCCTTGCAGCAGCTCC : 58669

    72 : lnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyG :    91
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lnArgAspLeuGlyProHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyG
 58668 : AGCGGGACCTGGGGCCCCACCACTTCAATGTACTTGCCTTCCCCTGCAACCAGTTTGGCC : 58609

    92 : lnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValS :   111
         ||||||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||
         lnGlnGluProAspSerAsnLysGluIleGluSerPheAlaArgHisThrTyrSerValS
 58608 : AGCAGGAGCCTGACAGCAATAAGGAGATTGAGAGCTTCGCCCGCCACACCTACAGTGTCT : 58549

   112 : erPheProMetPheSerLysIleAlaValThrGlyThrGlyAlaHisProAlaPheLysT :   131
         ||||||||||||||||||||:!!||||||! !||||||||||||||||||||||||||||
         erPheProMetPheSerLysValAlaValIleGlyThrGlyAlaHisProAlaPheLysT
 58548 : CTTTCCCCATGTTTAGCAAGGTTGCAGTCATCGGCACTGGTGCCCACCCTGCCTTCAAGT : 58489

   132 : yrLeuAla{G}  >>>> Target Intron 2 >>>>  {ln}ThrSerGlyLysGluP :   140
         |||||.!!{|}           1303 bp           {||}||||||||||||||||
         yrLeuThr{G}++                         ++{ln}ThrSerGlyLysGluP
 58488 : ATCTGACA{C}gt.........................ag{aG}ACTTCTGGGAAGGAGC : 57159

   141 : roThrTrpAsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpA :   160
         |||||||||||||||||||||||||||||.!!||||||||||||||||||||||||||||
         roThrTrpAsnPheTrpLysTyrLeuValThrProAspGlyLysValValGlyAlaTrpA
 57158 : CCACATGGAACTTCTGGAAGTACCTAGTGACCCCAGATGGAAAAGTAGTAGGGGCTTGGG : 57099

   161 : spProThrValSerValGluGluValArgProGlnIleThrAlaLeuValArgLysLeuI :   180
         || !!||||||||||||||||||:!!||||||||||||||||||||||||||||||||||
         spSerThrValSerValGluGluIleArgProGlnIleThrAlaLeuValArgLysLeuI
 57098 : ACTCAACCGTGTCAGTAGAGGAGATCAGGCCCCAGATCACAGCGCTTGTGAGGAAGCTCA : 57039

   181 : leLeuLeuLysArgGluAspLeu :   187
         |||||  !|||||||||||||||
         leLeuLysLysArgGluAspLeu
 57038 : TCCTGAAGAAGCGGGAAGACTTA : 57016

vulgar: SPP00000040_2.0 0 187 . JSZB01029812.1:subseq(0,75000) 64287 57015 - 891 M 46 138 5 0 2 I 0 5404 3 0 2 M 87 261 S 0 1 5 0 2 I 0 1299 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	gene	57016	64287	891	-	.	gene_id 1 ; sequence SPP00000040_2.0 ; gene_orientation +
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	cds	64150	64287	.	-	.	
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	exon	64150	64287	.	-	.	insertions 0 ; deletions 0
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	splice5	64148	64149	.	-	.	intron_id 1 ; splice_site "GT"
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	intron	58742	64149	.	-	.	intron_id 1
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	splice3	58742	58743	.	-	.	intron_id 0 ; splice_site "AG"
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	cds	58480	58741	.	-	.	
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	exon	58480	58741	.	-	.	insertions 0 ; deletions 0
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	splice5	58478	58479	.	-	.	intron_id 2 ; splice_site "GT"
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	intron	57177	58479	.	-	.	intron_id 2
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	splice3	57177	57178	.	-	.	intron_id 1 ; splice_site "ag"
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	cds	57016	57176	.	-	.	
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	exon	57016	57176	.	-	.	insertions 0 ; deletions 0
JSZB01029812.1:subseq(0,75000)	exonerate:protein2genome:local	similarity	57016	64287	891	-	.	alignment_id 1 ; Query SPP00000040_2.0 ; Align 64288 1 138 ; Align 58742 47 261 ; Align 57175 135 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis