------- SECIS element -- id:1 -- grade:A ---- Chromosome = JSZB01061009.1:subseq_4000,100000_ Strand = + Positions = 52772 - 52845 Found by: Infernal (score=29.37) Covels (score=37.11) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -12.66 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..({({((((......([[{(((((({(({(...............)}))}))))))}]])----...))))})}).. target UCCCCUCCGGCACCCAUGACGGUCUGCCUGGAAACCAGCCUGCUGGUGGGACAGACCCGAG----AACCCGGCGUGCA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JSZB01061009.1:subseq_4000,100000_ Strand = - Positions = 30971 - 30897 Found by: Infernal (score=11.21) Covels (score=5.73) Stem2 length = 8 Apical loop length = 11 Insertion in stem2 = 1, 0 Free Energy = -18.06 ..(((((((..........((((((((((((.(((...............)))))))))))))))..........))))))).. model uucggucaugcg---UuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc .((({((((((........([[((({(((((.(.......--------....))))))})))]])......-.))))))}))). target AUCCCCUUGUCAAGGAUCAUGAAGGUUUUCCAGUUACGCC--------AGCUCGGAAGCCCUGAGGAAGCA-GGGCAGGUGGGC **** ****