------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01005938.1:subseq_20000,100000_ Strand = + Positions = 53622 - 53686
 Found by:  Infernal (score=26.6) Covels (score=22.6)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -21.6

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...)))))))...
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC-UG-----UAUGGGUGGUGUCCGAG----AAGUGUGAAGAGC
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JSZB01005938.1:subseq_20000,100000_ Strand = - Positions = 87727 - 87651
 Found by:  Infernal (score=11.01) Covels (score=5.45)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 1
 Free Energy = -4.43

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         (((((({((.......{[[{{((((((((...................))))))).)}}]]}..--....))}))))))
 target  GGAGUUUAGCAGUAAAUGAAAACUUUGUGACAAAAGACGACCACAAAGUACAAAGUUAAGACUA--CAUUUUUAACUUC
                         ****           ^^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JSZB01005938.1:subseq_20000,100000_ Strand = - Positions = 54538 - 54442
 Found by:  Infernal (score=10.7)
 Stem2 length = 10   Apical loop length = 24   Insertion in stem2 = 1, 0
 Free Energy = -13.21

         ..(((((((................((((((((((.((((..........................))))))))))))))..........)))))))..
 model   uucggucaugcg---------UuaAUGAcGgccug-gcccgAAAcCcuuuuuggggu---------gggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({{(................{[[(((((({.(((((........................)))))}))))))]]}......-.-.)}}))))..
 target  UUUGGCAGACAUCAUUCCCUGAGAAUGAUGGUGCUCGGCCUUGGUGGUCGUGGAGCUUUGUGAGUAGGCCUGCACUGGAUGAAGAA-U-CUGAGCCACU
                                  ****                                               ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = JSZB01005938.1:subseq_20000,100000_ Strand = - Positions = 87588 - 87512
 Found by:  Infernal (score=10.2) Covels (score=10.35)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -5.29

         ..(((((((.........(((((((((((((((.................))))))).))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         .({(({(((.........([[{(((((((((.------..............))))).))))}]])......-.-.)))}))}).
 target  UGUCUUAUGACAGUAUCAUGACAUCAUGAAGA------UAGCACUGUUGUGGCUUUAUUGGUUGAAGCUGAU-U-CCAUUAGUCU
                           ****                                        ****