_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-75
 Query name: gi|961726607|ref|XP_014923639.1| PREDICTED: glutathione peroxidase 2 [Acinonyx jubatus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/698560979/tempfiles/temptarget.fasta
 Chromosome: JSZB01005938.1:subseq_20000,100000_ Strand: +
 Positions:
 -Exon 1  50515        50736
 -Exon 2  53039        53386

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||/|||||||||| ||||||||||||||||||||||||||||||||||||/|||||||||||| <   2302bp   > ||||||||||
Target  MAYIAKSFYDLSAVSLDGEKVDFNAFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLLVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcaggacgggaggtagtcgcggcagaggtctgaaacgtaccagcctctcacccgcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctagcctctttccgtgggatctacacgaggtgtgcgcacaccgcccgccggatatcgcggttcctccatatg                actgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        |||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||//|||||||
Target  SLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKR
        acacgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcagaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggagactcctgtacatag
        tcgtcctgtacgtctttcagtggttgcattccccggcgccccttcatccgcctacctgcggccatgcgctggcttgggggccacccccccttctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatct
              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 235 ; UGA-SECIS: 685

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01005938.1:subseq_20000,100000_ Strand = + Positions = 53622 - 53686
 Found by:  Infernal (score=26.6) Covels (score=22.6)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -21.6

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...)))))))...
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC-UG-----UAUGGGUGGUGUCCGAG----AAGUGUGAAGAGC
                         ****           ^^^                       ****