Command line: [exonerate -m p2g --showtargetgff -q GPx2.fa -t GPx2.subseq.fa]
Hostname: [ws101066u]

C4 Alignment:
------------
         Query: SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Human 
        Target: JSZB01005938.1:subseq(20000,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 974
   Query range: 0 -> 190
  Target range: 50514 -> 53386

     1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys :    20
         ||||||!:!||||||||||||||||||||||||||||||:!!||||||||||||||||||
         MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaValSerLeuAspGlyGluLys
 50515 : ATGGCTTACATTGCAAAGTCCTTCTATGACCTTAGTGCTGTCAGCCTGGATGGGGAGAAG : 50572

    21 : ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnk :    40
         ||||||||||||.!!||||||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnAlaPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***
 50573 : GTAGATTTCAATGCATTCCGAGGCCGGGCAGTGCTGATTGAGAATGTGGCCTCGCTCTGA : 50632

    41 : GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg
 50633 : GGCACAACCACCCGGGACTTCACCCAGCTCAACGAGCTGCAATGTCGATTTCCCAGGCGC : 50692

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intr :    75
         |||:!!||||||||||||||||||||||||||||||||||||           2302 bp
         LeuLeuValLeuGlyPheProCysAsnGlnPheGlyHisGln++                
 50693 : CTGCTGGTTCTTGGCTTCCCTTGCAACCAATTTGGACATCAGgt................ : 50739

    76 : on 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    |||||||||||||||||||||||||||||||||||||||:!!|||||||
                  ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysHisValArgP
 50740 : .........agGAAAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGCATGTCCGCC : 53087

    92 : roGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA :   111
         |||||||||||!:!||||||||||||||||||||||||||||||||||||||||||||||
         roGlyGlyGlyPheGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA
 53088 : CTGGGGGTGGATTCCAGCCTACCTTTACTCTTGTCCAAAAGTGTGAGGTGAATGGTCAGA : 53147

   112 : snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP :   131
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP
 53148 : ACGAACATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCCTATGATGACCCAT : 53207

   132 : heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValA :   151
         |||||||||||||||||||||||!!!||||||||||||||||||||||||||||||||||
         heSerLeuMetThrAspProLysPheIleIleTrpSerProValArgArgSerAspValA
 53208 : TTTCCCTCATGACCGACCCTAAATTCATCATTTGGAGCCCGGTGCGCCGCTCAGATGTGG : 53267

   152 : laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA :   171
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
         laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerH
 53268 : CCTGGAACTTTGAGAAGTTCCTTATTGGGCCGGAGGGGGAGCCCTTCCGACGCTACAGCC : 53327

   172 : rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle :   190
         .!||||||||||||:!!!:!|||||||||||||||||||||||||||||||||||||||
         isThrPheProThrValSerIleGluProAspIleLysArgLeuLeuLysValAlaIle
 53328 : ACACCTTCCCCACTGTTAGCATTGAGCCTGACATCAAGCGCCTCCTCAAAGTTGCCATT : 53386

vulgar: SPP00000019_2.0 0 190 . JSZB01005938.1:subseq(20000,100000) 50514 53386 + 974 M 74 222 5 0 2 I 0 2298 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	gene	50515	53386	974	+	.	gene_id 1 ; sequence SPP00000019_2.0 ; gene_orientation +
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	cds	50515	50736	.	+	.	
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	exon	50515	50736	.	+	.	insertions 0 ; deletions 0
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	splice5	50737	50738	.	+	.	intron_id 1 ; splice_site "GT"
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	intron	50737	53038	.	+	.	intron_id 1
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	splice3	53037	53038	.	+	.	intron_id 0 ; splice_site "AG"
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	cds	53039	53386	.	+	.	
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	exon	53039	53386	.	+	.	insertions 0 ; deletions 0
JSZB01005938.1:subseq(20000,100000)	exonerate:protein2genome:local	similarity	50515	53386	974	+	.	alignment_id 1 ; Query SPP00000019_2.0 ; Align 50515 1 222 ; Align 53039 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis