TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002930_2.0 # Protein # glucose-6-phosphate dehydrogenase (G6PD) # Human Length=545 Score E Sequences producing significant alignments: (Bits) Value JSZB01008575.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9980, ... 263 9e-106 JSZB01006752.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7754, ... 96.3 1e-18 JSZB01022343.1 Manis javanica isolate MP_PG03-UM SCAFFOLD28128,... 41.2 0.14 JSZB01006354.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7265, ... 35.4 8.6 > JSZB01008575.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9980, whole genome shotgun sequence Length=149239 Score = 263 bits (673), Expect(3) = 9e-106, Method: Compositional matrix adjust. Identities = 130/173 (75%), Positives = 139/173 (80%), Gaps = 31/173 (18%) Frame = -2 Query 318 KVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENE 377 +VKVLKCISEVQA+NVVLGQYVGNP+GEGEAT+GYLDDPTVP GSTTATFAAVVLYVENE Sbjct 99981 QVKVLKCISEVQADNVVLGQYVGNPNGEGEATRGYLDDPTVPHGSTTATFAAVVLYVENE 99802 Query 378 RWDG-------------------------------VPFILRCGKALNERKAEVRLQFHDV 406 RWDG VPF+LRCGKALNERKAEVRLQF DV Sbjct 99801 RWDGR*RLRAGKASWSLLPRAPPTRPHTVPLTPPGVPFVLRCGKALNERKAEVRLQFRDV 99622 Query 407 AGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESELDLTYGNRYK 459 AGDIF QQCKRNELV+RVQP+EAVYTKMMTKKPGMFF+PEESELDLTYG+RYK Sbjct 99621 AGDIFQQQCKRNELVVRVQPDEAVYTKMMTKKPGMFFSPEESELDLTYGSRYK 99463 Score = 110 bits (275), Expect(3) = 9e-106, Method: Compositional matrix adjust. Identities = 56/91 (62%), Positives = 59/91 (65%), Gaps = 30/91 (33%) Frame = -3 Query 485 SDELREAWRIFTPLLHQIELEKPKPIPYIYG----------------------------- 515 SDELREAWRIFTPLLH+IE EKP+PIPY+YG Sbjct 99206 SDELREAWRIFTPLLHRIEREKPQPIPYVYGR*GAGHQGMDGVGGTQAHASSCFPSACHS 99027 Query 516 -SRGPTEADELMKRVGFQYEGTYKWVNPHKL 545 SRGP EADELMKRVGFQYEGTYKWVNPHKL Sbjct 99026 PSRGPVEADELMKRVGFQYEGTYKWVNPHKL 98934 Score = 57.4 bits (137), Expect(3) = 9e-106, Method: Compositional matrix adjust. Identities = 25/26 (96%), Positives = 26/26 (100%), Gaps = 0/26 (0%) Frame = -1 Query 459 KNVKLPDAYERLILDVFCGSQMHFVR 484 +NVKLPDAYERLILDVFCGSQMHFVR Sbjct 99394 QNVKLPDAYERLILDVFCGSQMHFVR 99317 Score = 111 bits (277), Expect(2) = 8e-45, Method: Compositional matrix adjust. Identities = 52/59 (88%), Positives = 53/59 (90%), Gaps = 0/59 (0%) Frame = -2 Query 190 SQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFAN 248 S GWNR+IVEKPFGRDLQSSD LSNHISSLFREDQIYRIDHYLGKEMVQNLMVLR Sbjct 101163 SHRGWNRVIVEKPFGRDLQSSDHLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRCGQ 100987 Score = 95.1 bits (235), Expect(2) = 8e-45, Method: Compositional matrix adjust. Identities = 41/43 (95%), Positives = 43/43 (100%), Gaps = 0/43 (0%) Frame = -3 Query 245 RFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIR 287 RFANRIFGPIWNRDN+ACVI+TFKEPFGTEGRGGYFDEFGIIR Sbjct 100880 RFANRIFGPIWNRDNVACVIVTFKEPFGTEGRGGYFDEFGIIR 100752 Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 65/75 (87%), Positives = 69/75 (92%), Gaps = 0/75 (0%) Frame = -1 Query 117 FFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALPPTV 176 F+ATPEEK KLE FFARNSYVAGQYDD ASY+RLNSHMNALH G QANRLFYLALPPTV Sbjct 102322 LFQATPEEKPKLEQFFARNSYVAGQYDDTASYKRLNSHMNALHQGPQANRLFYLALPPTV 102143 Query 177 YEAVTKNIHESCMSQ 191 YEAVTKNIH++CMSQ Sbjct 102142 YEAVTKNIHDTCMSQ 102098 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/50 (82%), Positives = 45/50 (90%), Gaps = 0/50 (0%) Frame = -1 Query 27 ADSVMAEQVALSRTQVCGILREELFQGDAFHQSDTHIFIIMGASGDLAKK 76 A+S+MAEQVALSRTQVCGILREEL QGDAFHQSDTHIFIIMGAS + + Sbjct 112825 AESIMAEQVALSRTQVCGILREELCQGDAFHQSDTHIFIIMGASVSIPQS 112676 Score = 74.7 bits (182), Expect(2) = 6e-15, Method: Compositional matrix adjust. Identities = 34/38 (89%), Positives = 36/38 (95%), Gaps = 0/38 (0%) Frame = -1 Query 84 WLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKAT 121 WLFRDGLLPE+TFIVGYARS LTVADIRKQSEPFFK + Sbjct 102976 WLFRDGLLPEDTFIVGYARSHLTVADIRKQSEPFFKVS 102863 Score = 31.6 bits (70), Expect(2) = 6e-15, Method: Compositional matrix adjust. Identities = 13/13 (100%), Positives = 13/13 (100%), Gaps = 0/13 (0%) Frame = -2 Query 71 GDLAKKKIYPTIW 83 GDLAKKKIYPTIW Sbjct 103098 GDLAKKKIYPTIW 103060 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/34 (94%), Positives = 33/34 (97%), Gaps = 0/34 (0%) Frame = -3 Query 286 IRDVMQNHLLQMLCLVAMEKPASTNSDDVRDEKV 319 RDVMQNHLLQMLCLVAMEKPAST+SDDVRDEKV Sbjct 100424 TRDVMQNHLLQMLCLVAMEKPASTHSDDVRDEKV 100323 > JSZB01006752.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7754, whole genome shotgun sequence Length=181071 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 17/187 (9%) Frame = +3 Query 64 FIIMGASGDLAKKKIYPTIWWLFRDGLLPENTF------IVGYARSRLTVADIRKQSEPF 117 I++GA+GDLAKK ++ ++ L+ D + +F + + + VA + + Sbjct 123297 IILLGATGDLAKKYLWQGLFNLYLDESVKGYSFSFNGGALTPTKQGQEHVAKVLESLSCP 123476 Query 118 FKATPEEKLKLEDFFARNSYVAGQY---DDAASYQRLNSHMNAL--HLG-SQANRLFYLA 171 P+ +L+D F R S QY + Y LN + A H G + R+FY + Sbjct 123477 KDVAPDRCAELKDQFQRLS----QYRCVKTSEDYLALNKDIEAQVQHSGVREIGRIFYFS 123644 Query 172 LPPTVYEAVTKNIHESCM-SQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRID 230 +PP Y + +NI+ SC Q W RI++EKPFG DL S+ +L+ + S F E+++YR+D Sbjct 123645 VPPYAYVDIARNINSSCRPGQDTWLRIVLEKPFGHDLLSAQQLAAQLGSFFHEEEMYRVD 123824 Query 231 HYLGKEM 237 HYLGK++ Sbjct 123825 HYLGKQV 123845 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/69 (41%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Frame = +1 Query 271 FGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPASTNS-DDVRDEKVKVLKCISEVQ 329 F GR ++D +G+IRD++QNHL ++L LVAME P + +S + V K++ + + +Q Sbjct 135568 FPCSGRISFYDRYGVIRDILQNHLTEVLTLVAMELPHNISSVESVLQHKLQAFQALRGLQ 135747 Query 330 ANNVVLGQY 338 + VLGQY Sbjct 135748 KGSAVLGQY 135774 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/187 (29%), Positives = 85/187 (45%), Gaps = 40/187 (21%) Frame = +3 Query 368 AAVVLYVENERWDGVPFILRCGKALNERKAEVRLQF-----------HDVAGDIFHQQCK 416 + V+++++N RW+GVPFIL GKAL+ER + VR+ F H + G +C Sbjct 136566 SGVLVHMDNLRWEGVPFILMSGKALDERVSYVRILFKNRAYCTQSEKHWLEG---QSRCL 136736 Query 417 RNELVIRVQPNE----AVYTKMMTKKPGMFFNPEES--ELDLTYGNR-----------YK 459 +++ + E AV +P + P ES E++ G R Y Sbjct 136737 PQQIIFNIGYGELGSPAVLVSRTLFRPSL---PAESWKEVEGRPGLRLFGRPMSDFYAYS 136907 Query 460 NVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGP 519 V+ DAY LI +F + FV + L +W ++PLL + E P+ P G Sbjct 136908 PVREQDAYTVLISRIFHHQKDSFVTTQNLLASWAFWSPLLDSLANEVPRLYP------GG 137069 Query 520 TEADELM 526 TE +L+ Sbjct 137070 TENGQLL 137090 > JSZB01022343.1 Manis javanica isolate MP_PG03-UM SCAFFOLD28128, whole genome shotgun sequence Length=156373 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 3/116 (3%) Frame = +1 Query 241 LMVLRFANRIFGPIWNRDNIACVILTFKEPFGTE-GRGGYFDEFGIIRDVMQNHLLQMLC 299 L + R+ F P+W+R L GT G Y + I+ Q HLL++LC Sbjct 31417 LQLSRYTASHFTPLWSRQAACITFLCVPSACGTYLGFNKYLLKRQIVISWFQEHLLRVLC 31596 Query 300 LVAMEKPASTNSDDVRDEKVKVLKCISEVQANNVVLGQYVGNPDGEGEATKGYLDD 355 + P + +S R+ + I V+ ++++ G YV + +A K + Sbjct 31597 FSSF--PGAASSRSQRNTLFLAVPFIRRVE*SHILHGVYVQEEHVKQKAVKTVFEK 31758 > JSZB01006354.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7265, whole genome shotgun sequence Length=485259 Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust. Identities = 14/21 (67%), Positives = 17/21 (81%), Gaps = 0/21 (0%) Frame = +2 Query 525 LMKRVGFQYEGTYKWVNPHKL 545 L KR+GF ++GTYKW PHKL Sbjct 315140 LGKRMGFHHQGTYKWGKPHKL 315202 Lambda K H a alpha 0.321 0.138 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 342805582731 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40