Command line: [exonerate -m p2g --showtargetgff -q DIO3.aa.fa -t DIO3_JSZB01002288.1.subseq.fa]
Hostname: [ws101066u]

C4 Alignment:
------------
         Query: SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DIO3) # Human 
        Target: JSZB01002288.1:subseq(160000,101000) Manis javanica isolate MP_PG03-UM SCAFFOLD2556, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1366
   Query range: 0 -> 278
  Target range: 50799 -> 51633

     1 : MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeu :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysLeu
 50800 : ATGCTCCGCTCCCTGCTGCTTCACTCCCTGAGGCTGTGCGCCCAGACCGCCTCGTGCCTC : 50857

    21 : ValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCys :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLeuCys
 50858 : GTGCTCTTCCCGCGCTTCCTCGGCACGGCCTTCATGCTCTGGCTGCTCGACTTCTTGTGC : 50917

    41 : IleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluValGluLeu :    60
         ||||||||||||.!!||||||||| !!!.!||||||||||||||||||||||||||||||
         IleArgLysHisLeuLeuGlyArgGlyHisArgGlyGlnProGluProGluValGluLeu
 50918 : ATCCGCAAGCATCTCCTGGGTCGCGGCCACCGGGGGCAGCCCGAACCTGAAGTGGAGCTC : 50977

    61 : AsnSerGluGlyGluGluValProProAspAspProProIleCysValSerAspAspAsn :    80
         !.!.!!!!:||||||||||||||||||||||||||||||:!!||||||||||||||||||
         ThrGlyAspGlyGluGluValProProAspAspProProValCysValSerAspAspAsn
 50978 : ACCGGTGATGGCGAGGAGGTTCCTCCCGACGACCCGCCCGTCTGCGTGTCCGACGACAAC : 51037

    81 : ArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLeuAspPhePhe :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLeuAspPhePhe
 51038 : CGCCTGTGCACCCTGGCGTCGCTGAAGGCCGTGTGGCACGGCCAGAAGTTGGATTTCTTC : 51097

   101 : LysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeuProAspGlyPhe :   120
         |||||||||||||||||||||||||||||||||||||||||||||||||||!!:||||||
         LysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeuProGluGlyPhe
 51098 : AAGCAGGCGCATGAGGGCGGTCCCGCACCCAACTCCGAAGTGGTCCTGCCCGAGGGCTTC : 51157

   121 : GlnSerGlnHisIleLeuAspTyrAlaGlnGlyAsnArgProLeuValLeuAsnPheGly :   140
         !:!||||||||||||||||||||||||!:!|||!.!||||||||||||||||||||||||
         ArgSerGlnHisIleLeuAspTyrAlaArgGlyThrArgProLeuValLeuAsnPheGly
 51158 : CGGAGCCAGCACATCCTCGACTACGCGCGAGGAACCCGCCCACTGGTGCTCAATTTTGGC : 51217

   141 : SerCysThrUnkProProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLys :   160
         |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
         SerCysThr***ProProPheMetAlaArgMetSerAlaPheGlnArgLeuValThrLys
 51218 : AGCTGCACCTGACCACCGTTCATGGCGCGAATGAGCGCCTTCCAGCGCCTGGTTACCAAG : 51277

   161 : TyrGlnArgAspValAspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGly :   180
         ||||||!.!|||||||||||||||||||||||||||||||||||||||||||||||||||
         TyrGlnHisAspValAspPheLeuIleIleTyrIleGluGluAlaHisProSerAspGly
 51278 : TACCAGCACGACGTCGACTTCCTCATTATCTACATTGAGGAAGCGCACCCCTCCGATGGC : 51337

   181 : TrpValThrThrAspSerProTyrIleIleProGlnHisArgSerLeuGluAspArgVal :   200
         ||||||||||||||||||||||||! !|||||||||||||||!:!|||||||||||||||
         TrpValThrThrAspSerProTyrSerIleProGlnHisArgAsnLeuGluAspArgVal
 51338 : TGGGTGACCACAGACTCCCCTTACAGCATCCCGCAGCACAGAAACCTGGAGGACCGGGTC : 51397

   201 : SerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCysAlaLeuValLeuAspThrMet :   220
         ! !||||||||||||||||||||||||||||||.!!|||:!!||||||||||||||||||
         IleAlaAlaArgValLeuGlnGlnGlyAlaProSerCysSerLeuValLeuAspThrMet
 51398 : ATCGCAGCACGGGTACTGCAGCAAGGTGCACCCAGCTGCTCTCTCGTCCTAGACACCATG : 51457

   221 : AlaAsnSerSerSerSerAlaTyrGlyAlaTyrPheGluArgLeuTyrValIleGlnSer :   240
         |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
         AlaAsnSerSerSerSerAlaTyrGlyAlaTyrPheGluArgLeuTyrValValGlnSer
 51458 : GCCAACTCCAGCAGCTCGGCCTATGGCGCCTACTTCGAGCGCCTCTACGTTGTCCAGAGT : 51517

   241 : GlyThrIleMetTyrGlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArg :   260
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyThrIleMetTyrGlnGlyGlyArgGlyProAspGlyTyrGlnValSerGluLeuArg
 51518 : GGCACCATTATGTACCAGGGCGGCCGTGGCCCCGACGGCTATCAGGTCTCCGAGCTGCGT : 51577

   261 : ThrTrpLeuGluArgTyrAspGluGlnLeuHisGlyAlaArgProArgArgVal :   278
           !|||||||||||||||||||||||||||!.!.!!|||!:!||||||||||||
         PheTrpLeuGluArgTyrAspGluGlnLeuArgSerAlaGlnProArgArgVal
 51578 : TTCTGGCTGGAGCGCTATGATGAGCAACTGCGCAGCGCACAGCCCCGTCGAGTG : 51633

vulgar: SPP00000016_2.0 0 278 . JSZB01002288.1:subseq(160000,101000) 50799 51633 + 1366 M 278 834
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01002288.1:subseq(160000,101000)	exonerate:protein2genome:local	gene	50800	51633	1366	+	.	gene_id 1 ; sequence SPP00000016_2.0 ; gene_orientation .
JSZB01002288.1:subseq(160000,101000)	exonerate:protein2genome:local	cds	50800	51633	.	+	.	
JSZB01002288.1:subseq(160000,101000)	exonerate:protein2genome:local	exon	50800	51633	.	+	.	insertions 0 ; deletions 0
JSZB01002288.1:subseq(160000,101000)	exonerate:protein2genome:local	similarity	50800	51633	1366	+	.	alignment_id 1 ; Query SPP00000016_2.0 ; Align 50800 1 834
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis