------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01002288.1:subseq_160000,101000_ Strand = + Positions = 52213 - 52286
 Found by:  Infernal (score=18.91) Covels (score=25.09)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -17.45

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((........([[{(((([({(((.................)))})]))))}]])----.....))))))))
 target  CGAGCCCCACUGCUGAUGACGAACAGUCUCUAACUGGUCUUGACCACGAGCUGGUUCUGAA----UUGCAGGGGCUUG
                         ****           ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JSZB01002288.1:subseq_160000,101000_ Strand = + Positions = 59870 - 59949
 Found by:  Infernal (score=10.99) Covels (score=2.9)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -9.65

         ..(((((((...........((((((((((.(((((.................)))))))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((...........([[((((({(.((((...................)))))})))))]])----..-.))))}))..
 target  UGUGAGCUCCAGUGUAAGUGUGAAGGCCUGAGACCCAAGAAGGGCACAGGUGUAGGUUCUGGUCUGAG----UC-UGAGUCUAAA
                             ****            ^^                          ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JSZB01002288.1:subseq_160000,101000_ Strand = - Positions = 95225 - 95142
 Found by:  Infernal (score=10.31) Covels (score=3.48)
 Stem2 length = 8   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -12.22

         ..(((((((...........(((((((((((((((.....................)))))))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((..........([[[((({((({((.......................))})))})))]]])..--.--))))))))..
 target  CAGGCUCCCUGGGAGAGCAGUGAAUGUCAAGUCCCAAAUUUCCUUAAGUGGAGAACUGGCCUUUAUGGGAAGU--G--GGGGAGCUCU
                             ****           ^^^                             ****