_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-157
 Query name: gi|823397864|ref|XP_004417851.2| PREDICTED: type III iodothyronine deiodinase [Odobenus rosmarus divergens]
 Query range: 1-304  (total 304)

 Target: /data/www-rg/seblastian_results/723146967/tempfiles/temptarget.fasta
 Chromosome: JSZB01002288.1:subseq_160000,101000_ Strand: +
 Positions:
 -Exon 1  50722        51633

 Redox box: no

Query   MPRQAAPRLVVGEGSGSQGASGAAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPAVELDSDGEEVPPDDPPV
        ||||||   | ||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| |||  ||||||||||||
Target  MPRQAARPSVAGEGSGSRGASGAAATMLRSLLLHSLRLCAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHLLGRGHRGQPEPEVELTGDGEEVPPDDPPV
        acccggccagggggagtcggtggggaacctcccctcactgcagttcgctcctcgagtactccgtttacacccgcgccgccgcgggcaggggggccggccg
        tcgaccgcgtcgagggcggccgccccttgctttactgtgcacccgttttcgttgcctttgttattgtgaattgggaggacacatatcgagaatccaacct
        gtcgccgccggaaccgcggtggcaccgcccggtccgggccgccgccgccgccccgccgcggcccgcccgtcgtcccgggcataggccttcggttcccgcc
                                                                                                            

Query   CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPNGFQNQHILDYARGNRPLVLNFGSCTUPPFMARMSAFHRLVTKYQRDVDFLIIYIEE
        ||||||||||||||||||||||||||||||||||||||||||| ||//||||||||| |||||||||||||||||||||| ||||||| |||||||||||
Target  CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPEGFRSQHILDYARGTRPLVLNFGSCTUPPFMARMSAFQRLVTKYQHDVDFLIIYIEE
        tgtggacctacgtcaggtcgcatgttacgcgggcgcatgggccggtcaccacgtgcgacccgcatgatatcctagcaagtcccgaatccgggtcaatagg
        gtcaaagtgctcctactgagaatattaacaaggcccacatttcagtggaattaacggcgctttatgggcgccttcgtgctagttcaaaaatattttataa
        cgcccccgccgggggcggccgggtccgggtgctcacccagcgcgccgcgcccccgaaccaggcttccccaagcggagcccgcgtcgcgcccccctcctga
                                                                             *                              

Query   AHPSDGWVTTDSPYSIPQHRSLEDRVSAAQVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVIQNGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGAQ
        ||||||||||||||||||||/||||| ||/|||||||||||||||||||||||||||||||||/|/|||||||||||||||||||| |||||||||  ||
Target  AHPSDGWVTTDSPYSIPQHRNLEDRVIAARVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVVQSGTIMYQGGRGPDGYQVSELRFWLERYDEQLRSAQ
        gcctggtgaagtctaacccaacggcgaggcgcccggcattcgcgaagataatgtggttgcctggcagaaatcggcgcggtcgtgccttcgctggcccagc
        caccaggtccaccagtcaagataagttccgttaagccggctttactcacggccagcatagtattaggcttaaggggcagaatcatgtgtagaaaatggca
        gccctcggcacctcccggcacggcgccaagaggataccctccaccgcccccgctccccgccctcgtcctgcgcctcccctgccggtcgggcttgagccag
                                                                                                            

Query   PRRV
        ||||
Target  PRRV
        cccg
        cggt
        ctag
            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 579 ; UGA-SECIS: 981

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01002288.1:subseq_160000,101000_ Strand = + Positions = 52213 - 52286
 Found by:  Infernal (score=18.91) Covels (score=25.09)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -17.45

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((((((((........([[{(((([({(((.................)))})]))))}]])----.....))))))))
 target  CGAGCCCCACUGCUGAUGACGAACAGUCUCUAACUGGUCUUGACCACGAGCUGGUUCUGAA----UUGCAGGGGCUUG
                         ****           ^^                        ****