_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-27
 Query name: gi|831231462|ref|XP_003793192.2| PREDICTED: type I iodothyronine deiodinase [Otolemur garnettii] >gi|831231464|ref|XP_012662665.1| PREDICTED: type I iodothyronine deiodinase [Otolemur garnettii]
 Query range: 1-246  (total 249)

 Target: /data/www-rg/seblastian_results/482899240/tempfiles/temptarget.fasta
 Chromosome: JSZB01004892.1:subseq_100000,90000_ Strand: +
 Positions:
 -Exon 1  52874        53195
 -Exon 2  59348        59491
 -Exon 3  63571        63770
 -Exon 4  65708        65764

 Redox box: no

Query   MGLPRPGLWLKRLWVFLEVAVHVAVGKMLLILFPDRVKSQILAMGQQTGMAKNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDMTERGGLAPNCPVVRL
        |||||| | |||||| |/||/||||||/||/| | |||  |||| /      |||||/||| || /| |||||/|||||||||| ||/|||||||||| |
Target  MGLPRPALGLKRLWVLLQVALHVAVGKVLLVLCPGRVKQHILAMNK-----NNPHFSYDNWAPTLYSIQYFWFLLKVRWQRLEDKTEQGGLAPNCPVVHL
        agccccgcgcaactgctcggccggggagccgctcgagaccacgaaa-----aacctttgatgcactaacttttccagctcacggaagcggcgcatcggcc
        tgtcgcctgtagtgtttatctatctgatttttgcggtaaattctaa-----aacatcaaagccctagtaatgtttatggagtaaacaaggtccagcttat
        gggcgaggggggcgacgggcgtgcgcagagagtccacggccgcgcg-----cccccctccgcatccccgccgctggctggaggcgtgagtgcacctgccc
                                                                                                            

Query   SGQKCNIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFLFKFDQFKRLVEDFSSVADFLIIYIEEAHASD <---Intron---> GWAFKNN
        ||/ ||||||||| <   6152bp   > |||||||||||||||||||||||| |/|||||/||||/|||||||||| <   4079bp   > |||||||
Target  SGRWCNIWDFMQG                NRPLVLNFGSCTUPSFLFKFDQFKGLIEDFSSIADFLVIYIEEAHASD                GWAFKNN
        tgcttaatgtacg                aactgcatgatatcttctatgctagcaggtataggtcgatagggcgtg                gtgtaaa
        cggggatgatta                gagctttatgggcgcctttataatagttaatgctcattttataacacc                aggctaaa
        aatgcctgccga                ccgagggttattcatattcatcacgagtacttcaattcctctaaataa                tcgttgcc
                                                 *                                                          

Query   VDIRTHQNLQDRLQAAHLLLARSPQCPVVVDTMENQSSQLYAALPERLYVLQEGRILYK <---Intron---> GKSGPWNYQPEEVRAVLEK
        |||||| ||||||/|||||||||||||||||||/||||| ||||||||||||||||||| <   1937bp   > || ||||| ||||||||||
Target  VDIRTHLNLQDRLRAAHLLLARSPQCPVVVDTMKNQSSQQYAALPERLYVLQEGRILYK                GKPGPWNYHPEEVRAVLEK
        ggaaaccaccgcccggccccgaacctcggggaaaacaacctggccgactgccggaacta                gacgctatccgggcggcga
        tatgcatataagtgccatttcggcagctttactaaaggaaacctcagtattaaggttaa                gacgcgaaacaatgcttaa
        gccgtcgtcgccggaccgggcgccgcgggaccggcgccgacaagtggtcgcggcgcccg                tatctgcctagatattgag
                                                                                                      
 Sequence until next stop: 
CTCCATGGTTAA
 L  H  G  * 

 Distance CDS-SECIS: 601 ; UGA-SECIS: 961

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01004892.1:subseq_100000,90000_ Strand = + Positions = 66366 - 66436
 Found by:  Infernal (score=29.93) Covels (score=25.85)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -9.56

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}.....-...))))))...
 target  UUUAUAUUUG--UUUAUGAUGGCCACAGCCCAAAGUACA-----CACAGCUGUGACUUGAUGUGAA-AGAAAAUAUUUU
                         ****           ^^^                       ****