TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002946_2.0 # Protein # tocopherol (alpha) transfer proteins (TTPA) # Human Length=278 Score E Sequences producing significant alignments: (Bits) Value JSZB01011836.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14007,... 124 5e-57 JSZB01010511.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12342,... 132 9e-32 JSZB01017027.1 Manis javanica isolate MP_PG03-UM SCAFFOLD20733,... 53.1 7e-06 JSZB01004567.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5197, ... 50.1 8e-05 JSZB01002379.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2663, ... 49.3 1e-04 JSZB01006712.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7707, ... 43.1 0.013 > JSZB01011836.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14007, whole genome shotgun sequence Length=218787 Score = 124 bits (310), Expect(2) = 5e-57, Method: Compositional matrix adjust. Identities = 62/91 (68%), Positives = 75/91 (82%), Gaps = 1/91 (1%) Frame = -3 Query 189 LKVRGIHLINEPVIFHAVFSM-IKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGG 247 +K+ IHLINEP+IFHAVFS + +KI+ERIH H NNYKQSL QHFP IL LEYGG Sbjct 48205 IKICAIHLINEPIIFHAVFST*LNHS*LKKIEERIHTHRNNYKQSLHQHFPAILLLEYGG 48026 Query 248 EEFSMEDICQEWTNFIMKSEDYLSSISESIQ 278 EEFS++DIC + TNFI+KSE+YLSSIS++IQ Sbjct 48025 EEFSVKDICLK*TNFIVKSENYLSSISQTIQ 47933 Score = 121 bits (304), Expect(2) = 5e-57, Method: Compositional matrix adjust. Identities = 58/76 (76%), Positives = 64/76 (84%), Gaps = 0/76 (0%) Frame = -1 Query 115 LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPS 174 ++Y AHW KVFTAYD+ V LITS+ I QEVETQ+NGIKA+FDLE WQFSHAFQI PS Sbjct 48426 ILY*TAHWAQKVFTAYDILHVGLITSKFIAQEVETQQNGIKAVFDLECWQFSHAFQIIPS 48247 Query 175 VAKKIAAVLTDSFPLK 190 VAKKI AVLTDSFPLK Sbjct 48246 VAKKIDAVLTDSFPLK 48199 > JSZB01010511.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12342, whole genome shotgun sequence Length=374763 Score = 132 bits (333), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 64/68 (94%), Positives = 66/68 (97%), Gaps = 0/68 (0%) Frame = -1 Query 119 IAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKK 178 +A WDPKVFTAYDVFRVSLITSELIVQEVETQRNG+KAIFDLEGWQFSHAFQITPSVAKK Sbjct 23544 LACWDPKVFTAYDVFRVSLITSELIVQEVETQRNGVKAIFDLEGWQFSHAFQITPSVAKK 23365 Query 179 IAAVLTDS 186 IAAVLT S Sbjct 23364 IAAVLTVS 23341 Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 53/58 (91%), Positives = 58/58 (100%), Gaps = 0/58 (0%) Frame = -2 Query 221 RIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISESIQ 278 +IHMHG+NYKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSE+YLSSIS++IQ Sbjct 19148 QIHMHGDNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSENYLSSISQTIQ 18975 Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 46/50 (92%), Positives = 48/50 (96%), Gaps = 0/50 (0%) Frame = -2 Query 71 KNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIA 120 KNYYKWRAECPEISADLHPRSI+GLLKAGY GVLR+RDPTGSKVLIYRI Sbjct 27608 KNYYKWRAECPEISADLHPRSILGLLKAGYLGVLRARDPTGSKVLIYRIG 27459 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/38 (89%), Positives = 36/38 (95%), Gaps = 0/38 (0%) Frame = -1 Query 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 DSFPLKVRGIHLINEP+IF AVFSMIKPFLTEKIK R+ Sbjct 21765 DSFPLKVRGIHLINEPIIFDAVFSMIKPFLTEKIKGRV 21652 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/48 (69%), Positives = 37/48 (77%), Gaps = 0/48 (0%) Frame = -3 Query 3 EARSQPSAGPQLNALPDHSPllqpglaalrrrareaGVPLAPLPLTDS 50 E R +AG QL++LPDHSP+LQP LA LRRRAR AG P APL LTDS Sbjct 33961 ETRPGQAAGVQLSSLPDHSPVLQPSLAELRRRARAAGTPPAPLQLTDS 33818 > JSZB01017027.1 Manis javanica isolate MP_PG03-UM SCAFFOLD20733, whole genome shotgun sequence Length=383920 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 34/51 (67%), Gaps = 0/51 (0%) Frame = +2 Query 172 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 TP V + D FP++++ +H++NEP IF +F++IKPFL EKI R+ Sbjct 261698 TPHVLTACSLPPQDGFPIRIKAVHVVNEPRIFKGIFAIIKPFLKEKIANRV 261850 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%) Frame = +1 Query 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 181 W P + + R +T E ++Q ETQ NGI + D +G S A P +AKK+ Sbjct 260155 WIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVIG 260334 Query 182 VL 183 +L Sbjct 260335 IL 260340 > JSZB01004567.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5197, whole genome shotgun sequence Length=367485 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 17/38 (45%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = -2 Query 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 DSFP + G+H +N+P HA++++IKPFL +K ++R+ Sbjct 355280 DSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRV 355167 > JSZB01002379.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2663, whole genome shotgun sequence Length=110756 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 6/55 (11%) Frame = +3 Query 168 AFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 F +PS+ +L DSFP + GIH +N+P HA++++I+PFL EK ++R+ Sbjct 74508 CFDFSPSM------LL*DSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRV 74654 > JSZB01006712.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7707, whole genome shotgun sequence Length=205569 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (68%), Gaps = 0/40 (0%) Frame = +1 Query 183 LTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222 L DSFP + + IH I++P F ++++KPFL K+ +R+ Sbjct 151711 LQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLQRV 151830 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 0/57 (0%) Frame = +3 Query 72 NYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFT 128 Y +R + PE+ L ++ ++AGY GVL RD G V+++ I +WD + T Sbjct 149457 GYVHFRLQYPELFDGLSLEAVRCTIEAGYPGVLSHRDKHGRVVMLFNIENWDCEEVT 149627 Lambda K H a alpha 0.320 0.136 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 124969301158 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40