TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000127_2.0 # Protein # Selenoprotein W2 (SELENOW2) # Human

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01001359.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1497, ...  58.5    4e-18
  JSZB01015294.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18452,...  33.5    1.7  
  JSZB01002741.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3074, ...  32.7    3.0  


> JSZB01001359.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1497, 
whole genome shotgun sequence
Length=377191

 Score = 58.5 bits (140),  Expect(2) = 4e-18, Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 28/28 (100%), Gaps = 0/28 (0%)
 Frame = -2

Query  62      TGAFEIEINGQLVFSKLENGGFPYEKDL  89
               TGAFEIEINGQLVFSKLENGGFPYEKD+
Sbjct  256797  TGAFEIEINGQLVFSKLENGGFPYEKDV  256714


 Score = 53.9 bits (128),  Expect(2) = 4e-18, Method: Compositional matrix adjust.
 Identities = 26/27 (96%), Positives = 26/27 (96%), Gaps = 0/27 (0%)
 Frame = -1

Query  89      LIEAIRRASNGETLEKITNSRPPCVIL  115
               LIEAIRRASNGE LEKITNSRPPCVIL
Sbjct  256633  LIEAIRRASNGEPLEKITNSRPPCVIL  256553


 Score = 69.3 bits (168),  Expect(2) = 4e-14, Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
 Frame = -3

Query  31      EPCGFEATYLELASAVKEQYPGIEIESRLGGTG  63
               EPCGFEATYLELASAVKEQYPGIEIESRLGGTG
Sbjct  257327  EPCGFEATYLELASAVKEQYPGIEIESRLGGTG  257229


 Score = 30.0 bits (66),  Expect(2) = 4e-14, Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 24/29 (83%), Gaps = 0/29 (0%)
 Frame = -1

Query  1       MSGEPGQTSVApppeevepGSGVRIVVEY  29
               MSGE G  SVAPPP E+EPG GVRIVVEY
Sbjct  257521  MSGEQGPASVAPPPGEIEPGRGVRIVVEY  257435


> JSZB01015294.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18452, 
whole genome shotgun sequence
Length=468170

 Score = 33.5 bits (75),  Expect = 1.7, Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (63%), Gaps = 0/27 (0%)
 Frame = -1

Query  29      YCEPCGFEATYLELASAVKEQYPGIEI  55
               +C PCG +A +L LAS     YPG+ +
Sbjct  411170  FCSPCGMQALHLWLASDTLCSYPGVSV  411090


> JSZB01002741.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3074, 
whole genome shotgun sequence
Length=101130

 Score = 32.7 bits (73),  Expect = 3.0, Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (55%), Gaps = 4/51 (8%)
 Frame = -2

Query  34     GFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFP  84
                EATYL+  + +++ YP   I S+ G    F+++ N  L++  +  G FP
Sbjct  11297  ALEATYLQTTTCIRKNYPSSLIHSQSG----FQLQPNAPLIYLLVLQGPFP  11157



Lambda      K        H        a         alpha
   0.314    0.136    0.391    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21046655825


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40