TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000124_2.0 # Protein # Selenoprotein W1 (SELENOW1) # Human

Length=87
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01023688.1 Manis javanica isolate MP_PG03-UM SCAFFOLD30035,...  55.8    6e-09
  JSZB01009414.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11013,...  35.4    0.20 


> JSZB01023688.1 Manis javanica isolate MP_PG03-UM SCAFFOLD30035, 
whole genome shotgun sequence
Length=196680

 Score = 55.8 bits (133),  Expect(2) = 6e-09, Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%), Gaps = 0/25 (0%)
 Frame = -2

Query  37     CGEGTPQATGFFEVMVAGKLIHSKK  61
              CGEGTPQATGFFEVMVAGKL+HSKK
Sbjct  22649  CGEGTPQATGFFEVMVAGKLVHSKK  22575


 Score = 25.8 bits (55),  Expect(2) = 6e-09, Method: Composition-based stats.
 Identities = 10/11 (91%), Positives = 11/11 (100%), Gaps = 0/11 (0%)
 Frame = -1

Query  61     KKGDGYVDTES  71
              +KGDGYVDTES
Sbjct  22479  QKGDGYVDTES  22447


> JSZB01009414.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11013, 
whole genome shotgun sequence
Length=109960

 Score = 35.4 bits (80),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 32/46 (70%), Gaps = 0/46 (0%)
 Frame = -2

Query  7      VVYCGAXGykskylqlkkklEDEFPGRLDICGEGTPQATGFFEVMV  52
              VV+CGA  YK KY QL KKLE  FP  L   G+ TPQAT FFEVM+
Sbjct  28578  VVHCGA*DYKYKYFQLNKKLEG*FPRHLGTSGKVTPQATLFFEVML  28441



Lambda      K        H        a         alpha
   0.318    0.140    0.422    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21103124125


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40