TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000123_2.0 # Protein # Selenoprotein V (SELENOV) # Human

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01074457.1 Manis javanica isolate MP_PG03-UM C40903959, who...  57.0    5e-07
  JSZB01024090.1 Manis javanica isolate MP_PG03-UM SCAFFOLD30650,...  49.7    1e-04
  JSZB01004100.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4652, ...  35.0    0.001


> JSZB01074457.1 Manis javanica isolate MP_PG03-UM C40903959, whole 
genome shotgun sequence
Length=2128

 Score = 57.0 bits (136),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 34/84 (40%)
 Frame = -2

Query  297   EEDRAAQATGEFEVFVNGRLVHSK----------------------------------KR  322
             EED +AQ +GEFEVFV+ +LVHSK                                  ++
Sbjct  1800  EEDISAQVSGEFEVFVDRKLVHSKEVILSKGPGQGGRVVLRAPLGQEIYMSVLFPL*AQK  1621

Query  323   GDGFVNESRLQKIVSVIDEEIKKR  346
             GDGFV+E RLQ+I+S ID EI+KR
Sbjct  1620  GDGFVDEVRLQEIMSTIDVEIRKR  1549


 Score = 38.5 bits (88),  Expect = 0.45, Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query  278   RYILLKKSLEQQFPNHLLFEEDRAAQATGEFEVFVNGRLVHS  319
             +YILLKKSLEQQFPN LL      A  + E+E    G+L+ S
Sbjct  1948  QYILLKKSLEQQFPNCLLSVSVLVAWGS-EWESRFGGQLLAS  1826


> JSZB01024090.1 Manis javanica isolate MP_PG03-UM SCAFFOLD30650, 
whole genome shotgun sequence
Length=26871

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 33/80 (41%)
 Frame = +1

Query  300   RAAQATGEFEVFVNGRLVHSKK---------------------------------RGDGF  326
             ++ QATGE +V V  +L+HSKK                                 +GDGF
Sbjct  5431  QSTQATGESQVCVGNKLIHSKKVILSKGLGQGGRMVPGSRG*ETYMSVLFPLGAQKGDGF  5610

Query  327   VNESRLQKIVSVIDEEIKKR  346
             V+E RLQ+IVS I+EEI++R
Sbjct  5611  VDEVRLQEIVSAINEEIRER  5670


> JSZB01004100.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4652, 
whole genome shotgun sequence
Length=218740

 Score = 35.0 bits (79),  Expect(2) = 0.001, Method: Compositional matrix adjust.
 Identities = 15/22 (68%), Positives = 20/22 (91%), Gaps = 0/22 (0%)
 Frame = -3

Query  321     KRGDGFVNESRLQKIVSVIDEE  342
               ++GDGFV+E RLQ+IVS I+EE
Sbjct  212099  QKGDGFVDEIRLQEIVSTINEE  212034


 Score = 30.8 bits (68),  Expect(2) = 0.001, Method: Compositional matrix adjust.
 Identities = 12/22 (55%), Positives = 17/22 (77%), Gaps = 0/22 (0%)
 Frame = -2

Query  300     RAAQATGEFEVFVNGRLVHSKK  321
               ++ QATGE +V V  +L+HSKK
Sbjct  212262  QSTQATGESQVCVGSKLIHSKK  212197


 Score = 39.7 bits (91),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 28/38 (74%), Gaps = 0/38 (0%)
 Frame = +3

Query  235     GTIPSAISLQNCTETFPSSSENFALDKRVLIRVTYCGL  272
               GT+ S+++L   T TF S+SE+F +D R+LIRV + G+
Sbjct  204687  GTVQSSVTLPISTNTFASTSESFQVDSRILIRVIW*GV  204800



Lambda      K        H        a         alpha
   0.316    0.133    0.380    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 180290142860


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40