TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000106_2.0 # Protein # Selenoprotein T (SELENOT) # Human

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01003988.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4524, ...  93.6    2e-19
  JSZB01024448.1 Manis javanica isolate MP_PG03-UM SCAFFOLD31142,...  35.0    2.3  


> JSZB01003988.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4524, 
whole genome shotgun sequence
Length=495974

 Score = 93.6 bits (231),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
 Frame = -2

Query  83      RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV  126
               RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV
Sbjct  481579  RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV  481448


 Score = 89.0 bits (219),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 47/58 (81%), Gaps = 0/58 (0%)
 Frame = -3

Query  138     MIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS  195
               ++++Q    G       DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
Sbjct  477954  LLQHQF*FGGMVPFIFIDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS  477781


 Score = 77.8 bits (190),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 38/43 (88%), Positives = 38/43 (88%), Gaps = 0/43 (0%)
 Frame = -2

Query  41      LKFQICVSXGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  83
               L F   VS GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR
Sbjct  482266  LSFFCSVS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR  482138


 Score = 74.3 bits (181),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 47/50 (94%), Gaps = 3/50 (6%)
 Frame = -2

Query  1       MRllllllVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI---CV  47
               MRLLLLLLVAASAM+RS+ASANLGG+PSKRLKMQYATGPLLKFQI   CV
Sbjct  495283  MRLLLLLLVAASAMIRSDASANLGGMPSKRLKMQYATGPLLKFQIW*VCV  495134


 Score = 63.5 bits (153),  Expect = 8e-10, Method: Compositional matrix adjust.
 Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
 Frame = -3

Query  126     VYACMMVFFLSNMIENQCMSTGAFEITLN  154
               VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct  479478  VYACMMVFFLSNMIENQCMSTGAFEITLN  479392


> JSZB01024448.1 Manis javanica isolate MP_PG03-UM SCAFFOLD31142, 
whole genome shotgun sequence
Length=255162

 Score = 35.0 bits (79),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 12/38 (32%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
 Frame = +3

Query  131     MVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLP  168
               M++ LS+  +++    G+F +TL+ +P+W + + GH P
Sbjct  246288  MLYPLSHSSQSKATGPGSFHLTLHILPLWQRCQHGHWP  246401



Lambda      K        H        a         alpha
   0.325    0.137    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 60422699232


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40