TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002939_2.0 # Protein # seryl-tRNA synthetase 2, mitochondrial (SARS2) # Human Length=518 Score E Sequences producing significant alignments: (Bits) Value JSZB01004564.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5192, ... 118 7e-52 JSZB01004684.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5333, ... 54.3 1e-05 JSZB01000229.1 Manis javanica isolate MP_PG03-UM SCAFFOLD256, w... 35.8 6.9 > JSZB01004564.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5192, whole genome shotgun sequence Length=304502 Score = 118 bits (295), Expect(3) = 7e-52, Method: Compositional matrix adjust. Identities = 62/97 (64%), Positives = 64/97 (66%), Gaps = 30/97 (31%) Frame = -3 Query 387 RVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEV--------------------------- 419 RVLDMPTQELGLPAYRKFDIEAWMPGRG FGEV Sbjct 66513 RVLDMPTQELGLPAYRKFDIEAWMPGRGCFGEVSP*PGRGCREGRGDPPPSADPLVTLPH 66334 Query 420 ---TSASNCTDFQSRRLHIMFQTEAGELQFAHTVNAT 453 TSASNCTDFQSRRLHIMF TEAG+LQFAHTV +T Sbjct 66333 IQVTSASNCTDFQSRRLHIMFHTEAGDLQFAHTVGST 66223 Score = 87.4 bits (215), Expect(3) = 7e-52, Method: Compositional matrix adjust. Identities = 42/48 (88%), Positives = 45/48 (94%), Gaps = 0/48 (0%) Frame = -3 Query 471 KDGSVLVPPALQSYLGTDRITAPTHVPLQYIGPNQPRKPGLPGQPAVS 518 +DGSVLVPPALQ YLGTDRITAPTHVPLQYIGPNQP+KP PGQPA+S Sbjct 65973 QDGSVLVPPALQPYLGTDRITAPTHVPLQYIGPNQPQKPRPPGQPALS 65830 Score = 45.1 bits (105), Expect(3) = 7e-52, Method: Compositional matrix adjust. Identities = 23/29 (79%), Positives = 24/29 (83%), Gaps = 0/29 (0%) Frame = -2 Query 450 VNATACAVPRLLIALLESNQQKDGSVLVP 478 VNATACAVPRLLIALLES QQK +VP Sbjct 66118 VNATACAVPRLLIALLESYQQKVRMWIVP 66032 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/92 (68%), Positives = 73/92 (79%), Gaps = 0/92 (0%) Frame = -3 Query 1 MAASMARRLWPLLTRRGFRPRGGCISNDSPRRSFTTEKRNRNLLYEYAREGYSALPQLDI 60 MAAS+ARRLWP + RG R G C + S RRSF TE+++RNLLYE+AREGYSALPQLD+ Sbjct 75168 MAASIARRLWPWVAGRGLRLGGACAHSQSQRRSFATERQDRNLLYEHAREGYSALPQLDM 74989 Query 61 ERFCACPEEAAHALELRKGELRSADLPAIIST 92 E CACPEEAA ALELRKG L+ DLPAI+S Sbjct 74988 EPLCACPEEAARALELRKGALQPDDLPAIVSA 74893 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/93 (54%), Positives = 59/93 (63%), Gaps = 27/93 (29%) Frame = -2 Query 131 QDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDV------------ 178 QDP+YQ LR RGREIRK+L+ LYP+E QLEEQFYL+AL+LPN THP+V Sbjct 70360 QDPQYQRLRTRGREIRKQLMQLYPKETQLEEQFYLRALRLPNCTHPEVVSAALGRGWGRG 70181 Query 179 ---------------PVGDESQARVLHMVGDKP 196 PVGDESQARVL ++G KP Sbjct 70180 AT*STSLVTPTISLQPVGDESQARVLRVIGHKP 70082 Score = 75.9 bits (185), Expect(2) = 3e-17, Method: Compositional matrix adjust. Identities = 61/115 (53%), Positives = 65/115 (57%), Gaps = 45/115 (39%) Frame = -2 Query 319 PVRMVCSSTCYRAETNTGQEPRGLYRVHHFTKV--------------------------- 351 P RMVCSSTCYR ET+ G+EPRGLYRVHHFTKV Sbjct 67735 PRRMVCSSTCYRTETHKGKEPRGLYRVHHFTKVGAARPGKGGSPQQPWAS*PAPCALPQV 67556 Query 352 EMFGVTGPGleqssqlleeflslqM------------------EILTELGLHFRV 388 EMFGVTGPGLEQSS LLE+FLSLQ+ EILTELGLHFR Sbjct 67555 EMFGVTGPGLEQSSWLLEDFLSLQVXGLEQSSWLLEDFLSLQVEILTELGLHFRC 67391 Score = 37.7 bits (86), Expect(2) = 3e-17, Method: Compositional matrix adjust. Identities = 15/18 (83%), Positives = 17/18 (94%), Gaps = 0/18 (0%) Frame = -1 Query 304 LAGYFMDHTVAFRDLPVR 321 L GYFMDH+VAFRDLP+R Sbjct 67862 LPGYFMDHSVAFRDLPIR 67809 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 53/115 (46%), Gaps = 57/115 (50%) Frame = -1 Query 196 PVFSFQPRGHLEIGEKLDIIRQK------------------------------------- 218 P FSFQPRGHLEI EKLDIIRQK Sbjct 69650 PAFSFQPRGHLEIAEKLDIIRQK*APLPSHPQRLAQPRMQHRQGHARHECLMPAPCLAAG 69471 Query 219 --------RLSHVS------------GHRSYYLRGAGALLQHGLVNFTFNKLLRR 253 L+H+S GHRSYYLRGAGALLQHGLVNFT NKL+ R Sbjct 69470 P*VPVYSRHLAHMSACLSPRRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLVHR 69306 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/37 (92%), Positives = 36/37 (97%), Gaps = 0/37 (0%) Frame = -1 Query 270 EGCGMTPNANPSQIYNIDPARFKDLNLAGTAEVGLAG 306 EGCGMTPN NPSQIYNIDP+RF+DLNLAGTAEVGLAG Sbjct 68300 EGCGMTPNTNPSQIYNIDPSRFEDLNLAGTAEVGLAG 68190 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/34 (79%), Positives = 30/34 (88%), Gaps = 0/34 (0%) Frame = -2 Query 90 ISTWQELRQLQEQIRSLEEEKAAVTEAVRALLAN 123 I+TWQELRQL+EQIRSLEEEK AV EAVR LL + Sbjct 72400 IATWQELRQLREQIRSLEEEKGAVAEAVRDLLVS 72299 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/16 (100%), Positives = 16/16 (100%), Gaps = 0/16 (0%) Frame = -2 Query 254 GFTPMTVPDLLRGAVF 269 GFTPMTVPDLLRGAVF Sbjct 68581 GFTPMTVPDLLRGAVF 68534 > JSZB01004684.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5333, whole genome shotgun sequence Length=388448 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/42 (55%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Frame = -3 Query 396 LGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMF 437 L A +K D+EAW PG G F E+ S SNCTD+Q+RRL I + Sbjct 205839 LNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRY 205714 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/71 (34%), Positives = 38/71 (54%), Gaps = 1/71 (1%) Frame = -2 Query 287 DPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNT-GQEPRGLYRV 345 D + + L T+E +A D + DLP++ STC+R E + G++ RG++RV Sbjct 207013 DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRV 206834 Query 346 HHFTKVEMFGV 356 H F KV + V Sbjct 206833 HQFEKVSRW*V 206801 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 16/46 (35%), Positives = 33/46 (72%), Gaps = 1/46 (2%) Frame = -2 Query 440 EAGELQFAHTVNATACAVPRLLIALLESNQQKDGSVLVPPALQSYL 485 ++ +++F H +NAT CA R + A+LE++Q ++G ++VP L+ ++ Sbjct 204991 QSSQVEFVHMLNATMCATTRTICAILENHQTEEG-IMVPEKLKEFM 204857 > JSZB01000229.1 Manis javanica isolate MP_PG03-UM SCAFFOLD256, whole genome shotgun sequence Length=278163 Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/66 (29%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +3 Query 271 GCGMTPNANPSQIYNIDPARFKDLNLAGTAEVGLAGY--FMDHTVAFRDLPVRMVCSSTC 328 GCG+ P A+P+QI ++ P + + L G + L + M+H + D + C Sbjct 211866 GCGLPPQADPNQISDVHPDKSQGLEHGGVDAIFLKIFRLVMNHVLQVADHSLHA--PQQC 212039 Query 329 YRAETN 334 +RA T+ Sbjct 212040 HRAHTD 212057 Lambda K H a alpha 0.321 0.137 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 321044437024 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40