TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA)
# Human

Length=235
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01006427.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7353, ...    112   2e-25


> JSZB01006427.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7353, 
whole genome shotgun sequence
Length=755477

 Score =   112 bits (280),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 49/55 (89%), Positives = 54/55 (98%), Gaps = 0/55 (0%)
 Frame = -1

Query  181    KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGIKK  235
              +VLSEHG+GPITTD+REGQ FYYAEDYHQQYLSKNP+GYCGLGGTGVSCP+GIKK
Sbjct  69929  QVLSEHGYGPITTDVREGQPFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPLGIKK  69765


 Score = 86.3 bits (212),  Expect = 9e-17, Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 65/110 (59%), Gaps = 5/110 (5%)
 Frame = -1

Query  5       TRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHHVN-GNRTVEPFPE  63
               TR + Q+ L   +  V   GNS   I S    +   +EQ   ++   +    RT  P   
Sbjct  255335  TRHSLQITLNQIVLDV---GNSV*EIKS*SFLITK*QEQLLFSSVMGLLLAIRTCVP*RT  255165

Query  64      GTQMAVF-GMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEK  112
                  +  F GMGCFWGAERKFW LKGVYSTQVG+AGGYTSNPTYKEVCS +
Sbjct  255164  NQCLIFFLGMGCFWGAERKFWTLKGVYSTQVGYAGGYTSNPTYKEVCSGR  255015


 Score = 76.3 bits (186),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 33/35 (94%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
 Frame = -3

Query  112     KTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG  146
               KTGHAEVVRVV+QPEH+SFEELLKVFWENHDPTQG
Sbjct  195297  KTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQG  195193


 Score = 68.2 bits (165),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 34/37 (92%), Gaps = 0/37 (0%)
 Frame = -1

Query  146     GMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV  182
               GMRQGNDHG+QYRSAIYPTSA+ +EAAL S E+YQKV
Sbjct  168287  GMRQGNDHGSQYRSAIYPTSAEHLEAALKSTEDYQKV  168177


 Score = 52.0 bits (123),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 28/40 (70%), Gaps = 0/40 (0%)
 Frame = -3

Query  11      LLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKH  50
               L L  S FPV RMG+SAS I+SP EALPGRKE   VA K 
Sbjct  429828  LQLFRSFFPVRRMGDSASKILSPAEALPGRKESITVAGKD  429709


 Score = 49.7 bits (117),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 21/23 (91%), Positives = 22/23 (96%), Gaps = 0/23 (0%)
 Frame = -3

Query  49      KHHVNGNRTVEPFPEGTQMAVFG  71
               KHHVNGNRTVEPFPEG QMA+FG
Sbjct  288687  KHHVNGNRTVEPFPEGAQMALFG  288619



Lambda      K        H        a         alpha
   0.317    0.133    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91446874241


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40