TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Human Length=209 Score E Sequences producing significant alignments: (Bits) Value JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 169 4e-45 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 119 4e-28 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 63.5 1e-12 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 50.8 1e-05 JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 49.7 4e-05 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 169 bits (428), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 79/88 (90%), Positives = 83/88 (94%), Gaps = 0/88 (0%) Frame = +1 Query 68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127 +V+LVVNVASDCQLTDRNYL L+ELHKEFGP HFSVLAFPCNQFGESEPRPSKE+ SFAR Sbjct 385165 EVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVSFAR 385344 Query 128 KNYGVTFPIFHKIKILGSEGEPAFRFLV 155 NYGVTFPIFHKIKILGSE EPAFRFLV Sbjct 385345 NNYGVTFPIFHKIKILGSEAEPAFRFLV 385428 Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 47/59 (80%), Positives = 55/59 (93%), Gaps = 0/59 (0%) Frame = +2 Query 151 FRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209 + ++DSSKKEPRWNFWKYLVNPEGQVV W+PEEP+EVIRP+IAAL+RQ+IIKKKEDL Sbjct 388502 YSDILDSSKKEPRWNFWKYLVNPEGQVVNSWRPEEPVEVIRPEIAALIRQMIIKKKEDL 388678 Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/74 (80%), Positives = 68/74 (92%), Gaps = 0/74 (0%) Frame = +2 Query 1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTlfllqlkflkPKINSFYAFEVKDAKGRTV 60 MEPL AYPL+CSGP+AKVFAVLLS+VLCTV LFLLQLKFL+P+INSFY FEVKDA GRTV Sbjct 384416 MEPLIAYPLRCSGPKAKVFAVLLSMVLCTVMLFLLQLKFLRPQINSFYTFEVKDAHGRTV 384595 Query 61 SLEKYKGKVSLVVN 74 SLEK+KG+VS ++ Sbjct 384596 SLEKFKGRVSCILR 384637 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 49/91 (54%), Positives = 70/91 (77%), Gaps = 0/91 (0%) Frame = -1 Query 65 YKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 124 + +VSLVVNVAS+C TD++Y L++L ++ GP HF+VLAFPCNQFG+ EP +KE+ES Sbjct 58753 FTTQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 58574 Query 125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV 155 FAR Y V+FP+F K+ ++G+ PAF++L Sbjct 58573 FARHTYSVSFPMFSKVAVIGTGAHPAFKYLT 58481 Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/57 (58%), Positives = 43/57 (75%), Gaps = 0/57 (0%) Frame = -2 Query 153 FLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209 F +++S KEP WNFWKYLV P+G+VV W +E IRP I ALVR++I+KK+EDL Sbjct 57186 FSLETSGKEPTWNFWKYLVTPDGKVVGAWDSTVSVEEIRPQITALVRKLILKKREDL 57016 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 63.5 bits (153), Expect(2) = 1e-12, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 34/48 (71%), Gaps = 0/48 (0%) Frame = -2 Query 102 SVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEP 149 +VL FPCNQFG+ EP + ++ SF KNYGVTFP+F KI + G+ P Sbjct 1874 AVLGFPCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFEKIDVNGANAHP 1731 Score = 32.7 bits (73), Expect(2) = 1e-12, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (59%), Gaps = 0/39 (0%) Frame = -1 Query 163 RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQV 201 +WNF K+L+ +G VVK + P E I DI L+ +V Sbjct 1665 KWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL*RV 1549 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/68 (40%), Positives = 33/68 (49%), Gaps = 1/68 (1%) Frame = +3 Query 46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105 SFY G V ++G+ L+ NVAS T R++ L EL F P VL Sbjct 70533 SFYDLSAVSLDGEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLLVLG 70709 Query 106 FPCNQFGE 113 FPCNQFG Sbjct 70710 FPCNQFGH 70733 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/48 (48%), Positives = 29/48 (60%), Gaps = 0/48 (0%) Frame = +2 Query 66 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE 113 +G V +V NVAS TD NY L +LH + +LAFPCNQFG+ Sbjct 55868 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGK 56011 Lambda K H a alpha 0.320 0.138 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 70479596712 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40