TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000040_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Human Length=187 Score E Sequences producing significant alignments: (Bits) Value JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 179 4e-49 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 118 6e-28 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 66.6 6e-11 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 57.8 5e-08 JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 47.8 1e-04 JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 42.0 0.010 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 179 bits (455), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 83/88 (94%), Positives = 85/88 (97%), Gaps = 0/88 (0%) Frame = -1 Query 47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR Sbjct 58741 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARH 58562 Query 107 TYSVSFPMFSKIAVTGTGAHPAFKYLAQ 134 TYSVSFPMFSK+AV GTGAHPAFKYL + Sbjct 58561 TYSVSFPMFSKVAVIGTGAHPAFKYLTR 58478 Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 49/54 (91%), Positives = 51/54 (94%), Gaps = 0/54 (0%) Frame = -2 Query 134 QTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187 +TSGKEPTWNFWKYLV PDGKVVGAWD TVSVEE+RPQITALVRKLIL KREDL Sbjct 57177 ETSGKEPTWNFWKYLVTPDGKVVGAWDSTVSVEEIRPQITALVRKLILKKREDL 57016 Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/30 (90%), Positives = 30/30 (100%), Gaps = 0/30 (0%) Frame = -2 Query 20 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSL 49 Q+E+DFYDFKAVNIRGKLVSLEKYRGSVS+ Sbjct 64230 QRERDFYDFKAVNIRGKLVSLEKYRGSVSV 64141 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 118 bits (295), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 0/86 (0%) Frame = +1 Query 47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106 V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAFPCNQFG+ EP +KEI SFAR Sbjct 385168 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVSFARN 385347 Query 107 TYSVSFPMFSKIAVTGTGAHPAFKYL 132 Y V+FP+F KI + G+ A PAF++L Sbjct 385348 NYGVTFPIFHKIKILGSEAEPAFRFL 385425 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 43/56 (77%), Gaps = 0/56 (0%) Frame = +2 Query 132 LAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187 + +S KEP WNFWKYLV P+G+VV +W P VE +RP+I AL+R++I+ K+EDL Sbjct 388511 ILDSSKKEPRWNFWKYLVNPEGQVVNSWRPEEPVEVIRPEIAALIRQMIIKKKEDL 388678 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/47 (60%), Positives = 32/47 (68%), Gaps = 0/47 (0%) Frame = -2 Query 81 VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHP 127 VL FPCNQFG+QEP +I SF + Y V+FPMF KI V G AHP Sbjct 1871 VLGFPCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFEKIDVNGANAHP 1731 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/70 (43%), Positives = 39/70 (56%), Gaps = 1/70 (1%) Frame = +3 Query 23 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82 + FYD AV++ G+ V +RG L+ NVAS G T + + L +LQ P VL Sbjct 70530 KSFYDLSAVSLDGEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLLVL 70706 Query 83 AFPCNQFGQQ 92 FPCNQFG Q Sbjct 70707 GFPCNQFGHQ 70736 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 14/94 (15%) Frame = +1 Query 46 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR 105 S+ + V V C + H+ +Q LQ H P QEP SN EI+ FA Sbjct 56032 SLGVGVGVQRVCAHSRGHH-GVQALQ-----HSPQYPGLP------QEPGSNAEIKEFAA 56175 Query 106 RTYSVSFPMFSKIAVTGTGAHPAFKYL-AQTSGK 138 Y+V F M+SKI V G AHP +K++ AQ G+ Sbjct 56176 -GYNVKFDMYSKICVNGDDAHPLWKWMKAQPKGR 56274 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/49 (49%), Positives = 29/49 (59%), Gaps = 0/49 (0%) Frame = +2 Query 44 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 92 RG V +V NVAS+ G TD +Y L L +LAFPCNQFG+Q Sbjct 55868 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 56014 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/34 (53%), Positives = 21/34 (62%), Gaps = 0/34 (0%) Frame = -2 Query 67 LQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100 L LQ + P +L FPCNQFG+QEP N EI Sbjct 247430 LNALQEEFAPFGLVILGFPCNQFGKQEPGENWEI 247329 Lambda K H a alpha 0.320 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53709065984 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40