TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Human Length=221 Score E Sequences producing significant alignments: (Bits) Value JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 120 2e-28 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 95.9 5e-20 JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013,... 69.7 1e-11 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 55.1 8e-07 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 43.9 6e-06 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 46.6 4e-04 JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543,... 37.7 0.016 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 50/66 (76%), Positives = 59/66 (89%), Gaps = 0/66 (0%) Frame = -3 Query 152 LKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDI 211 L+NSCPPTS+LLGS +LFWEPMKVHDIRWNFEKFLVGPDG+P+M W+H+ VSTVK DI Sbjct 246394 LQNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTVKMDI 246215 Query 212 LEYLKQ 217 L Y++Q Sbjct 246214 LSYMRQ 246197 Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 34/51 (67%), Positives = 45/51 (88%), Gaps = 0/51 (0%) Frame = -1 Query 29 KVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQY 79 + DC+ GV+GTIY+YGALT++G+EYI FKQ+AGK++LFVNVA+Y GL QY Sbjct 248799 QTDCHAGVSGTIYDYGALTIDGQEYIPFKQYAGKYILFVNVASY*GLTGQY 248647 Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/51 (65%), Positives = 38/51 (75%), Gaps = 1/51 (2%) Frame = -2 Query 75 LAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK-YVCP 124 L+ PELNALQEE FG+++L FPCNQFGKQEPG N EIL LK +CP Sbjct 247451 LSLPGPELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEILPSLK*VLCP 247299 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/45 (67%), Positives = 35/45 (78%), Gaps = 2/45 (4%) Frame = -3 Query 120 KYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC--PPTSDL 162 +YV PG GF+P+F+LFEKGDVNGEKEQK +TFLK S PP L Sbjct 246904 RYVRPGGGFIPNFKLFEKGDVNGEKEQKFYTFLKVSVQMPPQGLL 246770 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 50/117 (43%), Positives = 68/117 (58%), Gaps = 4/117 (3%) Frame = +1 Query 104 FGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP-PTSD- 161 F QE N EIL LK+V PG GF P+F L +K +VNG+ E VF +LK+ P P D Sbjct 73027 FLPQENCQNEEILNSLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 73206 Query 162 --LLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 L+ + W P++ D+ WNFEKFL+GP+G P + H P +++ DI LK Sbjct 73207 FSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKRLLK 73377 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (58%), Gaps = 3/76 (4%) Frame = +3 Query 36 VTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGV 94 + + Y+ A++L+GE+ + F F G+ VL NVA+ G + + +LN LQ + Sbjct 70524 IAKSFYDLSAVSLDGEK-VDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPR-RL 70697 Query 95 IVLAFPCNQFGKQEPG 110 +VL FPCNQFG Q G Sbjct 70698 LVLGFPCNQFGHQVRG 70745 > JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013, whole genome shotgun sequence Length=240900 Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/86 (41%), Positives = 47/86 (55%), Gaps = 4/86 (5%) Frame = -3 Query 134 LFEKGDVNGEKEQKVFTFLKNSCPPTSD----LLGSSSQLFWEPMKVHDIRWNFEKFLVG 189 LFEK +VNG +F FL+ + P D L+ + W P+ D+ WNFEKFLVG Sbjct 158974 LFEKCEVNGAGAHPLFAFLREALPAPCDDAVALMTDPKLITWSPVCRSDVAWNFEKFLVG 158795 Query 190 PDGVPVMHWFHQAPVSTVKSDILEYL 215 PDGVPV + + P ++ DI L Sbjct 158794 PDGVPVRRYSRRFPTIDIEPDIEALL 158717 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Frame = -1 Query 59 FAGKHVLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILL 117 F + L VNVA+ G Q Y L LQ +L VLAFPCNQFG+QEP +N EI Sbjct 58753 FTTQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 58574 Query 118 GLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKN 154 ++ + SF +F K V G F +L Sbjct 58573 FARHT-----YSVSFPMFSKVAVIGTGAHPAFKYLTR 58478 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 43.9 bits (102), Expect(2) = 6e-06, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 5/50 (10%) Frame = -2 Query 93 GVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNG 142 G+ VL FPCNQFGKQEPG ++I C + +F +FEK DVNG Sbjct 1880 GLAVLGFPCNQFGKQEPGDAAQI----GSFCE-KNYGVTFPMFEKIDVNG 1746 Score = 29.6 bits (65), Expect(2) = 6e-06, Method: Compositional matrix adjust. Identities = 14/37 (38%), Positives = 19/37 (51%), Gaps = 0/37 (0%) Frame = -1 Query 179 IRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215 I+WNF KFL+G DG V + + DI + L Sbjct 1668 IKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL 1558 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (7%) Frame = +1 Query 64 VLFVNVAAYXGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYV 122 L VNVA+ L + Y L L +E F VLAFPCNQFG+ EP + EI+ + Sbjct 385171 ALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVSFAR-- 385344 Query 123 CPGSGFVPSFQLFEKGDVNGEKEQKVFTFL 152 + + +F +F K + G + + F FL Sbjct 385345 ---NNYGVTFPIFHKIKILGSEAEPAFRFL 385425 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%) Frame = +2 Query 160 SDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQF 218 SD+L SS + EP RWNF K+LV P+G V W + PV ++ +I ++Q Sbjct 388505 SDILDSSKK---EP------RWNFWKYLVNPEGQVVNSWRPEEPVEVIRPEIAALIRQM 388654 > JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543, whole genome shotgun sequence Length=79305 Score = 37.7 bits (86), Expect(2) = 0.016, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 0/72 (0%) Frame = +2 Query 70 AAYXGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFV 129 +A Y + N LQ L GV+VL F NQFG QE E L L Y+ S Sbjct 46967 SASKTRVQDYTQKNKLQRCLSPRGVVVLGFLYNQFGPQENAKYKENLDFLNYMQLDSRLE 47146 Query 130 PSFQLFEKGDVN 141 +F LF+ ++N Sbjct 47147 SNFTLFKNCELN 47182 Score = 23.5 bits (49), Expect(2) = 0.016, Method: Compositional matrix adjust. Identities = 9/33 (27%), Positives = 17/33 (52%), Gaps = 0/33 (0%) Frame = +3 Query 173 PMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVS 205 P+ + ++ W ++K LVG P+ + P S Sbjct 47283 PVYLDNVVWKYKKLLVGLSSTPLHRYSRCFPDS 47381 Lambda K H a alpha 0.322 0.139 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80548110528 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40