TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000036_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Human Length=221 Score E Sequences producing significant alignments: (Bits) Value JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 107 6e-24 JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 106 1e-23 JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013,... 79.7 8e-15 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 66.6 1e-10 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 49.7 2e-08 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 58.5 4e-08 JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543,... 46.2 3e-06 JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, w... 46.6 4e-04 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 4/117 (3%) Frame = +1 Query 104 FGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSE-- 161 F QE N+EIL LK+VRPGGGF P+F L +K +VNG+ E VF++LK P+P + Sbjct 73027 FLPQENCQNEEILNSLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 73206 Query 162 --ILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216 ++ K I W PV+ D+ WNFEKFL+GP+G P R+SH S++ DI LK Sbjct 73207 FSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKRLLK 73377 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/73 (44%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Frame = +3 Query 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVL 97 + YD A++L+ E V F + G+ +L NVA+ G T + + +LN LQ P L+VL Sbjct 70533 SFYDLSAVSLD-GEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLLVL 70706 Query 98 GFPCNQFGKQEPG 110 GFPCNQFG Q G Sbjct 70707 GFPCNQFGHQVRG 70745 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 48/89 (54%), Positives = 64/89 (72%), Gaps = 3/89 (3%) Frame = -3 Query 132 FQLFEKGDVNGEKEQKVFSF---LKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLV 188 F ++G G + + L++SCP SE+LG+ + W+P+KVHDIRWNFEKFLV Sbjct 246463 FSYLQEGRRRGGAPTGLTPYTLPLQNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLV 246284 Query 189 GPDGIPVMRWSHRATVSSVKTDILAYLKQ 217 GPDGIP+MRW HR TVS+VK DIL+Y++Q Sbjct 246283 GPDGIPIMRWYHRTTVSTVKMDILSYMRQ 246197 Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/46 (76%), Positives = 39/46 (85%), Gaps = 0/46 (0%) Frame = -2 Query 75 LTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK 120 L+ PELNALQEE P+GLV+LGFPCNQFGKQEPG+N EILP LK Sbjct 247451 LSLPGPELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEILPSLK 247314 Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/52 (60%), Positives = 38/52 (73%), Gaps = 0/52 (0%) Frame = -1 Query 28 MKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQY 79 + DCH GTIYDY A+ ++ EY+ FKQY GK+ILFVNVA+Y GLT QY Sbjct 248802 FQTDCHAGVSGTIYDYGALTIDGQEYIPFKQYAGKYILFVNVASY*GLTGQY 248647 Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%), Gaps = 0/53 (0%) Frame = -3 Query 120 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWD 172 +YVRPGGGF+P+F+LFEKGDVNGEKEQK ++FLK S P + L + +++ D Sbjct 246904 RYVRPGGGFIPNFKLFEKGDVNGEKEQKFYTFLKVSVQMPPQGLLAWLTLALD 246746 > JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013, whole genome shotgun sequence Length=240900 Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 53/86 (62%), Gaps = 4/86 (5%) Frame = -3 Query 134 LFEKGDVNGEKEQKVFSFLKHSCPHPSE----ILGTFKSISWDPVKVHDIRWNFEKFLVG 189 LFEK +VNG +F+FL+ + P P + ++ K I+W PV D+ WNFEKFLVG Sbjct 158974 LFEKCEVNGAGAHPLFAFLREALPAPCDDAVALMTDPKLITWSPVCRSDVAWNFEKFLVG 158795 Query 190 PDGIPVMRWSHRATVSSVKTDILAYL 215 PDG+PV R+S R ++ DI A L Sbjct 158794 PDGVPVRRYSRRFPTIDIEPDIEALL 158717 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/89 (44%), Positives = 48/89 (54%), Gaps = 6/89 (7%) Frame = -1 Query 65 LFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVR 123 L VNVA+ CG T Q Y L LQ +L P+ VL FPCNQFG+QEP NKEI ++ Sbjct 58735 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARHT- 58559 Query 124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFL 152 + SF +F K V G F +L Sbjct 58558 ----YSVSFPMFSKVAVIGTGAHPAFKYL 58484 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 49.7 bits (117), Expect(2) = 2e-08, Method: Compositional matrix adjust. Identities = 29/55 (53%), Positives = 32/55 (58%), Gaps = 15/55 (27%) Frame = -2 Query 93 GLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVP-----SFQLFEKGDVNG 142 GL VLGFPCNQFGKQEPGD +I G F +F +FEK DVNG Sbjct 1880 GLAVLGFPCNQFGKQEPGDAAQI----------GSFCEKNYGVTFPMFEKIDVNG 1746 Score = 32.0 bits (71), Expect(2) = 2e-08, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 0/36 (0%) Frame = -1 Query 176 VHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211 + I+WNF KFL+G DG V R++ ++ DI Sbjct 1677 LEAIKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDI 1570 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 6/89 (7%) Frame = +1 Query 65 LFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVR 123 L VNVA+ C LT + Y L L +E P+ VL FPCNQFG+ EP +KEI + + R Sbjct 385174 LVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEI---VSFAR 385344 Query 124 PGGGFVPSFQLFEKGDVNGEKEQKVFSFL 152 G +F +F K + G + + F FL Sbjct 385345 NNYGV--TFPIFHKIKILGSEAEPAFRFL 385425 > JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543, whole genome shotgun sequence Length=79305 Score = 46.2 bits (108), Expect(2) = 3e-06, Method: Compositional matrix adjust. Identities = 27/63 (43%), Positives = 35/63 (56%), Gaps = 0/63 (0%) Frame = +2 Query 79 YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG 138 Y + N LQ L P G+VVLGF NQFG QE KE L L Y++ +F LF+ Sbjct 46994 YTQKNKLQRCLSPRGVVVLGFLYNQFGPQENAKYKENLDFLNYMQLDSRLESNFTLFKNC 47173 Query 139 DVN 141 ++N Sbjct 47174 ELN 47182 Score = 27.7 bits (60), Expect(2) = 3e-06, Method: Compositional matrix adjust. Identities = 10/28 (36%), Positives = 17/28 (61%), Gaps = 0/28 (0%) Frame = +3 Query 173 PVKVHDIRWNFEKFLVGPDGIPVMRWSH 200 PV + ++ W ++K LVG P+ R+S Sbjct 47283 PVYLDNVVWKYKKLLVGLSSTPLHRYSR 47366 > JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, whole genome shotgun sequence Length=577107 Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (2%) Frame = +2 Query 70 ATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPG 125 A+ G TA+ Y + L++ L+ GL+VL FP QFG QE G +EILP L +VR G Sbjct 519230 ASLGGTTARGYTRTSKLRQHLERQGLMVLDFPRTQFGHQENGQGEEILPSL*HVRLG 519400 Lambda K H a alpha 0.320 0.138 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80548110528 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40