TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human Length=197 Score E Sequences producing significant alignments: (Bits) Value JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 104 8e-70 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 63.5 1e-17 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 81.3 2e-15 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 73.2 9e-13 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 62.0 3e-09 JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 46.6 3e-04 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 104 bits (259), Expect(5) = 8e-70, Method: Compositional matrix adjust. Identities = 46/51 (90%), Positives = 48/51 (94%), Gaps = 0/51 (0%) Frame = +1 Query 108 QEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 QEPGSN EIKEFAAGYNVKFDM+SKICVNGDDAHPLWKWMK QPKG+G LG Sbjct 56134 QEPGSNAEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKAQPKGRGTLG 56286 Score = 99.8 bits (247), Expect(5) = 8e-70, Method: Compositional matrix adjust. Identities = 48/52 (92%), Positives = 49/52 (94%), Gaps = 0/52 (0%) Frame = +2 Query 60 RGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPG 111 RGFVCIVTNVASQ GKT+VNYTQLVDLHARYAECGLRILAFPCNQFGKQ G Sbjct 55868 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQVCG 56023 Score = 72.0 bits (175), Expect(5) = 8e-70, Method: Composition-based stats. Identities = 32/39 (82%), Positives = 34/39 (87%), Gaps = 1/39 (3%) Frame = +3 Query 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYRG-FVCIV 66 CA+RDDWR A SMHEFSAKDIDGHMVNLDKYR F C+V Sbjct 55695 CAARDDWRSAHSMHEFSAKDIDGHMVNLDKYRWVFACLV 55811 Score = 52.4 bits (124), Expect(5) = 8e-70, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 30/57 (53%), Gaps = 26/57 (46%) Frame = +3 Query 167 KFLIDKNGCVVKRYGPMEEPL--------------------------VIEKDLPHYF 197 +FLIDKNGCVVKRYGPMEEPL VIEKDLP +F Sbjct 56538 QFLIDKNGCVVKRYGPMEEPLVCASPGSPLGSGPPQRLPLTPHSSLQVIEKDLPCHF 56708 Score = 21.2 bits (43), Expect(5) = 8e-70, Method: Compositional matrix adjust. Identities = 8/9 (89%), Positives = 9/9 (100%), Gaps = 0/9 (0%) Frame = +2 Query 159 NAIKWNFTK 167 +AIKWNFTK Sbjct 56390 SAIKWNFTK 56416 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 63.5 bits (153), Expect(2) = 1e-17, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 35/54 (65%), Gaps = 1/54 (2%) Frame = -2 Query 90 YAECGLRILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHP 142 YA GL +L FPCNQFGKQEPG +I F Y V F MF KI VNG +AHP Sbjct 1892 YAARGLAVLGFPCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFEKIDVNGANAHP 1731 Score = 48.9 bits (115), Expect(2) = 1e-17, Method: Compositional matrix adjust. Identities = 21/34 (62%), Positives = 27/34 (79%), Gaps = 0/34 (0%) Frame = -1 Query 160 AIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 AIKWNFTKFLI ++G VVKRY P+ +P I +D+ Sbjct 1671 AIKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDI 1570 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/86 (49%), Positives = 55/86 (64%), Gaps = 1/86 (1%) Frame = -1 Query 63 VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-A 121 V +V NVAS+ G T+ +Y L L +LAFPCNQFG+QEP SN+EI+ FA Sbjct 58741 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARH 58562 Query 122 GYNVKFDMFSKICVNGDDAHPLWKWM 147 Y+V F MFSK+ V G AHP +K++ Sbjct 58561 TYSVSFPMFSKVAVIGTGAHPAFKYL 58484 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/86 (42%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Frame = +1 Query 63 VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAA- 121 V +V NVAS T+ NY L +LH + +LAFPCNQFG+ EP ++EI FA Sbjct 385168 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVSFARN 385347 Query 122 GYNVKFDMFSKICVNGDDAHPLWKWM 147 Y V F +F KI + G +A P ++++ Sbjct 385348 NYGVTFPIFHKIKILGSEAEPAFRFL 385425 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/74 (42%), Positives = 45/74 (61%), Gaps = 1/74 (1%) Frame = +3 Query 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRI 97 A+S ++ SA +DG V+ + +RG ++ NVAS G T ++TQL +L R+ L + Sbjct 70527 AKSFYDLSAVSLDGEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPR-RLLV 70703 Query 98 LAFPCNQFGKQEPG 111 L FPCNQFG Q G Sbjct 70704 LGFPCNQFGHQVRG 70745 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/36 (61%), Positives = 24/36 (67%), Gaps = 0/36 (0%) Frame = -2 Query 81 TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEI 116 +L L +A GL IL FPCNQFGKQEPG N EI Sbjct 247436 PELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEI 247329 Lambda K H a alpha 0.324 0.140 0.457 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 61256014551 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40