TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000021_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Human Length=226 Score E Sequences producing significant alignments: (Bits) Value JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 146 5e-37 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 94.0 2e-19 JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013,... 68.2 4e-11 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 58.2 8e-08 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 47.8 2e-07 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 54.3 1e-06 JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543,... 47.4 8e-06 JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, w... 45.8 0.001 JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 42.4 0.011 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 146 bits (368), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 68/79 (86%), Positives = 73/79 (92%), Gaps = 1/79 (1%) Frame = -3 Query 149 YTF-LKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNV 207 YT L+NSCPPTSELLG+ DRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW+HRTTVS V Sbjct 246406 YTLPLQNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTV 246227 Query 208 KMDILSYMRRQAALGVKRK 226 KMDILSYMR+QAAL V+ K Sbjct 246226 KMDILSYMRQQAALAVEGK 246170 Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 44/52 (85%), Positives = 49/52 (94%), Gaps = 0/52 (0%) Frame = -1 Query 29 KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYI 80 + DCH G+SGTIY+YGALTIDG+EYIPFKQYAGKY+LFVNVASY GLTGQYI Sbjct 248799 QTDCHAGVSGTIYDYGALTIDGQEYIPFKQYAGKYILFVNVASY*GLTGQYI 248644 Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/42 (90%), Positives = 39/42 (93%), Gaps = 0/42 (0%) Frame = -2 Query 81 ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYV 122 ELNALQEE APFGLVILGFPCNQFGKQEPGEN EILP+LK V Sbjct 247433 ELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEILPSLK*V 247308 Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 35/45 (78%), Positives = 38/45 (84%), Gaps = 2/45 (4%) Frame = -3 Query 120 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC--PPTSEL 162 +YVRPGGGF+PNF+LFEKGDVNGEKEQKFYTFLK S PP L Sbjct 246904 RYVRPGGGFIPNFKLFEKGDVNGEKEQKFYTFLKVSVQMPPQGLL 246770 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 70/117 (60%), Gaps = 4/117 (3%) Frame = +1 Query 104 FGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP-PTSE- 161 F QE +N EIL +LK+VRPGGGF P F L +K +VNG+ E + +LK+ P P + Sbjct 73027 FLPQENCQNEEILNSLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 73206 Query 162 --LLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR 216 L+ + W P++ D+ WNFEKFL+GP+G P R+ H +++ DI ++ Sbjct 73207 FSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKRLLK 73377 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/77 (43%), Positives = 48/77 (62%), Gaps = 3/77 (4%) Frame = +3 Query 36 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGL 94 I+ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ P L Sbjct 70524 IAKSFYDLSAVSLDGEK-VDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRL 70697 Query 95 VILGFPCNQFGKQEPGE 111 ++LGFPCNQFG Q G Sbjct 70698 LVLGFPCNQFGHQVRGR 70748 > JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013, whole genome shotgun sequence Length=240900 Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (56%), Gaps = 4/86 (5%) Frame = -3 Query 134 LFEKGDVNGEKEQKFYTFLKNSCPPTSE----LLGTSDRLFWEPMKVHDIRWNFEKFLVG 189 LFEK +VNG + FL+ + P + L+ + W P+ D+ WNFEKFLVG Sbjct 158974 LFEKCEVNGAGAHPLFAFLREALPAPCDDAVALMTDPKLITWSPVCRSDVAWNFEKFLVG 158795 Query 190 PDGIPIMRWHHRTTVSNVKMDILSYM 215 PDG+P+ R+ R +++ DI + + Sbjct 158794 PDGVPVRRYSRRFPTIDIEPDIEALL 158717 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/95 (37%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Frame = -1 Query 59 YAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILP 117 + + L VNVAS G T Q Y L LQ +L P +L FPCNQFG+QEP N EI Sbjct 58753 FTTQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 58574 Query 118 TLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152 ++ + +F +F K V G + +L Sbjct 58573 FARHT-----YSVSFPMFSKVAVIGTGAHPAFKYL 58484 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 47.8 bits (112), Expect(2) = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 5/50 (10%) Frame = -2 Query 93 GLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNG 142 GL +LGFPCNQFGKQEPG+ ++I + + F +FEK DVNG Sbjct 1880 GLAVLGFPCNQFGKQEPGDAAQIGSFCEK-----NYGVTFPMFEKIDVNG 1746 Score = 30.8 bits (68), Expect(2) = 2e-07, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 21/39 (54%), Gaps = 0/39 (0%) Frame = -1 Query 179 IRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217 I+WNF KFL+G DG + R+ T + DI + R Sbjct 1668 IKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL*R 1552 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 47/89 (53%), Gaps = 6/89 (7%) Frame = +1 Query 65 LFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR 123 L VNVAS LT + Y+ L L +E PF +L FPCNQFG+ EP + EI + + R Sbjct 385174 LVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEI---VSFAR 385344 Query 124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152 G F +F K + G + + + FL Sbjct 385345 NNYGV--TFPIFHKIKILGSEAEPAFRFL 385425 > JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543, whole genome shotgun sequence Length=79305 Score = 47.4 bits (111), Expect(2) = 8e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 0/63 (0%) Frame = +2 Query 79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG 138 Y + N LQ L+P G+V+LGF NQFG QE + E L L Y++ NF LF+ Sbjct 46994 YTQKNKLQRCLSPRGVVVLGFLYNQFGPQENAKYKENLDFLNYMQLDSRLESNFTLFKNC 47173 Query 139 DVN 141 ++N Sbjct 47174 ELN 47182 Score = 25.4 bits (54), Expect(2) = 8e-06, Method: Compositional matrix adjust. Identities = 8/26 (31%), Positives = 16/26 (62%), Gaps = 0/26 (0%) Frame = +3 Query 173 PMKVHDIRWNFEKFLVGPDGIPIMRW 198 P+ + ++ W ++K LVG P+ R+ Sbjct 47283 PVYLDNVVWKYKKLLVGLSSTPLHRY 47360 > JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, whole genome shotgun sequence Length=577107 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/57 (46%), Positives = 35/57 (61%), Gaps = 1/57 (2%) Frame = +2 Query 70 ASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPG 125 AS G T + Y + L++ L GL++L FP QFG QE G+ EILP+L +VR G Sbjct 519230 ASLGGTTARGYTRTSKLRQHLERQGLMVLDFPRTQFGHQENGQGEEILPSL*HVRLG 519400 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 27/52 (52%), Gaps = 1/52 (2%) Frame = +2 Query 61 GKYVLFVNVASYXGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPGE 111 G + NVAS G T Y +L L A GL IL FPCNQFGKQ G Sbjct 55871 GFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQVCGH 56026 Lambda K H a alpha 0.320 0.140 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 83896214900 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40