TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Human Length=190 Score E Sequences producing significant alignments: (Bits) Value JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 237 5e-69 JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013,... 135 6e-34 JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543,... 58.2 9e-15 JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, w... 60.8 6e-09 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 45.4 6e-08 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 56.2 2e-07 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 50.8 1e-05 JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 47.0 2e-04 JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 42.7 0.005 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 237 bits (604), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 112/120 (93%), Positives = 116/120 (97%), Gaps = 0/120 (0%) Frame = +1 Query 71 FGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 130 F QENCQNEEILNSLK+VRPGGG+QPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP Sbjct 73027 FLPQENCQNEEILNSLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 73206 Query 131 FSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190 FSLMTDPK IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS TFPT++IEPDIKRLLKVAI Sbjct 73207 FSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKRLLKVAI 73386 Score = 147 bits (371), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 69/74 (93%), Positives = 72/74 (97%), Gaps = 0/74 (0%) Frame = +3 Query 1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR 60 MA+IAKSFYDLSA+SLDGEKVDFN FRGRAVLIENVASL GTTTRDFTQLNELQCRFPRR Sbjct 70515 MAYIAKSFYDLSAVSLDGEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR 70694 Query 61 LVVLGFPCNQFGHQ 74 L+VLGFPCNQFGHQ Sbjct 70695 LLVLGFPCNQFGHQ 70736 > JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013, whole genome shotgun sequence Length=240900 Score = 135 bits (341), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 61/87 (70%), Positives = 71/87 (82%), Gaps = 0/87 (0%) Frame = -3 Query 100 TLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLI 159 L +KCEVNG HP+FA+L++ LP P DD +LMTDPKLI WSPV RSDVAWNFEKFL+ Sbjct 158977 ALFEKCEVNGAGAHPLFAFLREALPAPCDDAVALMTDPKLITWSPVCRSDVAWNFEKFLV 158798 Query 160 GPEGEPFRRYSRTFPTINIEPDIKRLL 186 GP+G P RRYSR FPTI+IEPDI+ LL Sbjct 158797 GPDGVPVRRYSRRFPTIDIEPDIEALL 158717 > JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543, whole genome shotgun sequence Length=79305 Score = 58.2 bits (139), Expect(2) = 9e-15, Method: Compositional matrix adjust. Identities = 33/72 (46%), Positives = 45/72 (63%), Gaps = 1/72 (1%) Frame = +2 Query 38 SLXGTTTRDFTQLNELQ-CRFPRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQ 96 S T +D+TQ N+LQ C PR +VVLGF NQFG QEN + +E L+ L Y++ + Sbjct 46967 SASKTRVQDYTQKNKLQRCLSPRGVVVLGFLYNQFGPQENAKYKENLDFLNYMQLDSRLE 47146 Query 97 PTFTLVQKCEVN 108 FTL + CE+N Sbjct 47147 SNFTLFKNCELN 47182 Score = 44.7 bits (104), Expect(2) = 9e-15, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (57%), Gaps = 0/46 (0%) Frame = +3 Query 129 DPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFP 174 D +L TD K I +PV +V W ++K L+G P RYSR FP Sbjct 47238 DITTLTTDSKFIPGAPVYLDNVVWKYKKLLVGLSSTPLHRYSRCFP 47375 > JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, whole genome shotgun sequence Length=577107 Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 15/112 (13%) Frame = +2 Query 37 ASLXGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGY 95 ASL GTT R +T+ ++L+ R+ L+VL FP QFGHQEN Q EEIL SL +VR G Sbjct 519230 ASLGGTTARGYTRTSKLRQHLERQGLMVLDFPRTQFGHQENGQGEEILPSL*HVRLG--- 519400 Query 96 QPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRR 147 +L++ + P FA L++ LP P +L + L++ P R Sbjct 519401 ----SLLRT-----RLHAPFFAVLQEALPAPAMT--TLRSQLALVVSVPRGR 519523 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 45.4 bits (106), Expect(2) = 6e-08, Method: Compositional matrix adjust. Identities = 25/56 (45%), Positives = 31/56 (55%), Gaps = 5/56 (9%) Frame = -2 Query 59 RRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHP 114 R L VLGFPCNQFG QE +I + + Y TF + +K +VNG N HP Sbjct 1883 RGLAVLGFPCNQFGKQEPGDAAQIGSFCEK-----NYGVTFPMFEKIDVNGANAHP 1731 Score = 33.9 bits (76), Expect(2) = 6e-08, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 0/37 (0%) Frame = -1 Query 150 VAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186 + WNF KFLIG +G +RY+ I DI++LL Sbjct 1668 IKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL 1558 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/96 (38%), Positives = 47/96 (49%), Gaps = 6/96 (6%) Frame = -1 Query 25 TFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEIL 83 F + L+ NVAS G T + + L +LQ P VL FPCNQFG QE N+EI Sbjct 58756 VFTTQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIE 58577 Query 84 NSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYL 119 + ++ Y +F + K V G HP F YL Sbjct 58576 SFARHT-----YSVSFPMFSKVAVIGTGAHPAFKYL 58484 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 45/94 (48%), Gaps = 6/94 (6%) Frame = +1 Query 30 AVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKY 88 L+ NVAS T R++ L EL F P VL FPCNQFG E ++EI++ + Sbjct 385168 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVSFAR- 385344 Query 89 VRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122 Y TF + K ++ G P F +L K Sbjct 385345 ----NNYGVTFPIFHKIKILGSEAEPAFRFLVGK 385434 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Frame = -2 Query 49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYV 89 +LN LQ F P LV+LGFPCNQFG QE +N EIL SLK V Sbjct 247433 ELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEILPSLK*V 247308 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/55 (35%), Positives = 31/55 (56%), Gaps = 0/55 (0%) Frame = -3 Query 133 LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187 L+ P + W P++ D+ WNFEKFL+GP+G P R+ ++ DI ++ Sbjct 246364 LLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTVKMDILSYMR 246200 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/49 (39%), Positives = 29/49 (59%), Gaps = 0/49 (0%) Frame = -3 Query 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMT 135 +YVRPGGG+ P F L +K +VNG+ E + +LK + P + +T Sbjct 246904 RYVRPGGGFIPNFKLFEKGDVNGEKEQKFYTFLKVSVQMPPQGLLAWLT 246758 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = +2 Query 27 RGRAVLIENVASLXGTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQ 74 RG ++ NVAS G T ++TQL +L R+ L +L FPCNQFG Q Sbjct 55868 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 56014 Lambda K H a alpha 0.323 0.141 0.439 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56226678452 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40