TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) # Human Length=203 Score E Sequences producing significant alignments: (Bits) Value JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013,... 177 4e-48 JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, ... 171 6e-46 JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543,... 79.3 1e-22 JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, w... 74.7 3e-15 JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039,... 73.9 5e-13 JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442,... 49.3 1e-09 JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, ... 59.7 2e-08 JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, w... 56.6 1e-07 JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784,... 50.8 1e-05 JSZB01002041.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2281, ... 46.6 3e-04 > JSZB01021545.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27013, whole genome shotgun sequence Length=240900 Score = 177 bits (449), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 84/93 (90%), Positives = 86/93 (92%), Gaps = 0/93 (0%) Frame = -3 Query 111 LFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVG 170 LFEKCEVNGAGAHPLFAFLREALPAP DDA ALMTDPKLITWSPVCR+DVAWNFEKFLVG Sbjct 158974 LFEKCEVNGAGAHPLFAFLREALPAPCDDAVALMTDPKLITWSPVCRSDVAWNFEKFLVG 158795 Query 171 PDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 203 PDGVP+RRYSRRF TIDIEPDIEALL P CA Sbjct 158794 PDGVPVRRYSRRFPTIDIEPDIEALLPAVPGCA 158696 > JSZB01005938.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6780, whole genome shotgun sequence Length=305186 Score = 171 bits (433), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 78/117 (67%), Positives = 92/117 (79%), Gaps = 0/117 (0%) Frame = +1 Query 81 FGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDA 140 F QEN +NEEILNSLK+VRPGGGF+P F L +KCEVNG HP+FA+L++ LP P DD Sbjct 73027 FLPQENCQNEEILNSLKHVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 73206 Query 141 TALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 +LMTDPK I WSPV R+DVAWNFEKFL+GP+G P RRYS F T+ IEPDI+ LL Sbjct 73207 FSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSHTFPTVSIEPDIKRLLK 73377 Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/71 (63%), Positives = 52/71 (73%), Gaps = 2/71 (3%) Frame = +3 Query 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73 +S Y SA L GE V + RG+ +LIENVASL GTT RD+TQ+NELQ R PR L+V Sbjct 70530 KSFYDLSAVSL-DGEKVDFNAFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLLV 70703 Query 74 LGFPCNQFGHQ 84 LGFPCNQFGHQ Sbjct 70704 LGFPCNQFGHQ 70736 > JSZB01017608.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21543, whole genome shotgun sequence Length=79305 Score = 79.3 bits (194), Expect(2) = 1e-22, Method: Compositional matrix adjust. Identities = 41/72 (57%), Positives = 50/72 (69%), Gaps = 0/72 (0%) Frame = +2 Query 47 SLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFE 106 S T V+DYTQ N+LQR L PRG+VVLGF NQFG QENAK +E L+ L Y++ E Sbjct 46967 SASKTRVQDYTQKNKLQRCLSPRGVVVLGFLYNQFGPQENAKYKENLDFLNYMQLDSRLE 47146 Query 107 PNFMLFEKCEVN 118 NF LF+ CE+N Sbjct 47147 SNFTLFKNCELN 47182 Score = 50.1 bits (118), Expect(2) = 1e-22, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 0/67 (0%) Frame = +3 Query 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190 + +P+ D T L TD K I +PV ++V W ++K LVG PL RYSR F D Sbjct 47214 QNVPSMPSDITTLTTDSKFIPGAPVYLDNVVWKYKKLLVGLSSTPLHRYSRCFPDSDNSL 47393 Query 191 DIEALLS 197 +ALL+ Sbjct 47394 VTKALLA 47414 > JSZB01000840.1 Manis javanica isolate MP_PG03-UM SCAFFOLD930, whole genome shotgun sequence Length=577107 Score = 74.7 bits (182), Expect(2) = 3e-15, Method: Compositional matrix adjust. Identities = 49/112 (44%), Positives = 64/112 (57%), Gaps = 14/112 (13%) Frame = +2 Query 46 ASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGF 105 ASL GTT R YT+ ++L++ L +GL+VL FP QFGHQEN + EEIL SL +VR G Sbjct 519230 ASLGGTTARGYTRTSKLRQHLERQGLMVLDFPRTQFGHQENGQGEEILPSL*HVRLGS-- 519403 Query 106 EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCR 157 +L + P FA L+EALPAP+ T L + L+ P R Sbjct 519404 ----LLRTRLHA------PFFAVLQEALPAPA--MTTLRSQLALVVSVPRGR 519523 Score = 29.6 bits (65), Expect(2) = 3e-15, Method: Compositional matrix adjust. Identities = 15/23 (65%), Positives = 16/23 (70%), Gaps = 0/23 (0%) Frame = +3 Query 14 QSVYAFSARPLAGGEPVSLGSLR 36 +SVY SA P AGGEP LGS R Sbjct 519135 RSVYGSSACPRAGGEPKRLGSRR 519203 > JSZB01029812.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39039, whole genome shotgun sequence Length=75181 Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 53/92 (58%), Gaps = 5/92 (5%) Frame = -1 Query 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 +V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG QE N+EI + + Sbjct 58744 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFAR 58565 Query 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 + + +F +F K V G GAHP F +L Sbjct 58564 HT-----YSVSFPMFSKVAVIGTGAHPAFKYL 58484 > JSZB01061275.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97442, whole genome shotgun sequence Length=1893 Score = 49.3 bits (116), Expect(2) = 1e-09, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 33/56 (59%), Gaps = 5/56 (9%) Frame = -2 Query 69 RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHP 124 RGL VLGFPCNQFG QE +I + + + F +FEK +VNGA AHP Sbjct 1883 RGLAVLGFPCNQFGKQEPGDAAQIGSFCEK-----NYGVTFPMFEKIDVNGANAHP 1731 Score = 37.0 bits (84), Expect(2) = 1e-09, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 23/37 (62%), Gaps = 0/37 (0%) Frame = -1 Query 160 VAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196 + WNF KFL+G DG ++RY+ + I DIE LL Sbjct 1668 IKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL 1558 > JSZB01002610.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2923, whole genome shotgun sequence Length=495018 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Frame = +1 Query 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 +V L+ NVAS T R+Y + EL + GP VL FPCNQFG E ++EI++ Sbjct 385165 EVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEIVS--- 385335 Query 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 + R G F +F K ++ G+ A P F FL Sbjct 385336 FARNNYG--VTFPIFHKIKILGSEAEPAFRFL 385425 > JSZB01000211.1 Manis javanica isolate MP_PG03-UM SCAFFOLD235, whole genome shotgun sequence Length=275412 Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/64 (38%), Positives = 38/64 (59%), Gaps = 0/64 (0%) Frame = -3 Query 140 ATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQG 199 + L+ P + W P+ +D+ WNFEKFLVGPDG+P+ R+ R ++ DI + + Q Sbjct 246373 TSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTVKMDILSYMRQQ 246194 Query 200 PSCA 203 + A Sbjct 246193 AALA 246182 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/42 (62%), Positives = 30/42 (71%), Gaps = 0/42 (0%) Frame = -2 Query 58 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYV 99 ++N LQ P GLV+LGFPCNQFG QE +N EIL SLK V Sbjct 247433 ELNALQEEFAPFGLVILGFPCNQFGKQEPGENWEILPSLK*V 247308 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 30/49 (61%), Gaps = 0/49 (0%) Frame = -3 Query 97 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMT 145 +YVRPGGGF PNF LFEK +VNG + FL+ ++ P A +T Sbjct 246904 RYVRPGGGFIPNFKLFEKGDVNGEKEQKFYTFLKVSVQMPPQGLLAWLT 246758 > JSZB01061009.1 Manis javanica isolate MP_PG03-UM SCAFFOLD96784, whole genome shotgun sequence Length=104543 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 0/49 (0%) Frame = +2 Query 36 RGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84 RG V ++ NVAS G T +YTQ+ +L R GL +L FPCNQFG Q Sbjct 55868 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 56014 > JSZB01002041.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2281, whole genome shotgun sequence Length=224562 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/34 (62%), Positives = 28/34 (82%), Gaps = 1/34 (3%) Frame = -2 Query 80 QFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE 113 QF Q+N +NEEILNSL+Y+ P G F+PNF+LF+ Sbjct 148106 QFS-QQNNRNEEILNSLEYI*PSGMFKPNFILFQ 148008 Lambda K H a alpha 0.321 0.139 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 66290755473 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40