TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DIO3) #
Human

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01002288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2556, ...    509   5e-162
  JSZB01004262.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4833, ...    144   9e-36 
  JSZB01004892.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5563, ...  66.6    2e-10 
  JSZB01007698.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8905, ...  35.4    3.0   


> JSZB01002288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2556, 
whole genome shotgun sequence
Length=416281

 Score =   509 bits (1311),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 243/266 (91%), Positives = 252/266 (95%), Gaps = 0/266 (0%)
 Frame = +2

Query  13      CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDP  72
               CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKH LGR  RGQPEPEVEL  +GEEVPPDDP
Sbjct  210836  CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHLLGRGHRGQPEPEVELTGDGEEVPPDDP  211015

Query  73      PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN  132
               P+CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLP+GF+SQHILDYA+G 
Sbjct  211016  PVCVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPEGFRSQHILDYARGT  211195

Query  133     RPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ  192
               RPLVLNFGSCT PPFMARMSAFQRLVTKYQ DVDFLIIYIEEAHPSDGWVTTDSPY IPQ
Sbjct  211196  RPLVLNFGSCT*PPFMARMSAFQRLVTKYQHDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ  211375

Query  193     HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD  252
               HR+LEDRV AARVLQQGAP C+LVLDTMANSSSSAYGAYFERLYV+QSGTIMYQGGRGPD
Sbjct  211376  HRNLEDRVIAARVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVVQSGTIMYQGGRGPD  211555

Query  253     GYQVSELRTWLERYDEQLHGARPRRV  278
               GYQVSELR WLERYDEQL  A+PRRV
Sbjct  211556  GYQVSELRFWLERYDEQLRSAQPRRV  211633


> JSZB01004262.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4833, 
whole genome shotgun sequence
Length=249848

 Score =   144 bits (363),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 109/188 (58%), Gaps = 22/188 (12%)
 Frame = -2

Query  99      FFKQAHEGGPAPNSEVV------------------LPDGFQSQHILDYAQGNRPLVLNFG  140
               F  Q   G  APNS VV                  + DG +  H+LD+A   RPLV+NFG
Sbjct  176416  FHHQVKLGEDAPNSSVVHVSSREGGDNSGSGAQEKVTDGAEC-HLLDFAHPERPLVVNFG  176240

Query  141     SCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRV  200
               S T PPF +++ AF+ LV ++    DFL++YI+EAHPSDGW      + + +HR+ EDR 
Sbjct  176239  SAT*PPFTSQLPAFRTLVDEFSSVADFLLVYIDEAHPSDGWAVPSLSFEVKKHRNQEDRC  176060

Query  201     SAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVS  257
               +AA+ L +     P C +V D M N+++ AYG  FER+ ++Q   I Y GG+GP  Y + 
Sbjct  176059  AAAQQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFCYNLQ  175880

Query  258     ELRTWLER  265
               E+R WLE+
Sbjct  175879  EVRCWLEK  175856


> JSZB01004892.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5563, 
whole genome shotgun sequence
Length=196381

 Score = 66.6 bits (161),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 40/67 (60%), Gaps = 4/67 (6%)
 Frame = +2

Query  131     GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDG----WVTTDS  186
               GNRPLVLNFGSCT P F+ +   F+ L+  +    DFL+IYIEEAH S        T+  
Sbjct  159347  GNRPLVLNFGSCT*PSFLFKFDQFKGLIEDFSSIADFLVIYIEEAHASGTERSLASTSSL  159526

Query  187     PYIIPQH  193
               P I P H
Sbjct  159527  PLISPAH  159547


 Score = 63.2 bits (152),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
 Frame = +1

Query  179     DGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI  238
               DGW   ++   I  H +L+DR+ AA +L   +P C +V+DTM N SS  Y A  ERLYV+
Sbjct  163570  DGWAFKNN-VDIRTHLNLQDRLRAAHLLLARSPQCPVVVDTMKNQSSQQYAALPERLYVL  163746

Query  239     QSGTIMYQ---GGRGPDG  253
               Q G I+Y+    GR P G
Sbjct  163747  QEGRILYKVVPWGREPSG  163800


> JSZB01007698.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8905, 
whole genome shotgun sequence
Length=345479

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 24/93 (26%), Positives = 39/93 (42%), Gaps = 13/93 (14%)
 Frame = +3

Query  141     SCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRV  200
               S T P  +  +S   R +T+  R+  F             W  + +P ++ +HR + DR 
Sbjct  200433  SSTGPRPLGGISGGTRGLTEAVREDRF-------------WCRSSAPGVLREHRYIRDRS  200573

Query  201     SAARVLQQGAPGCALVLDTMANSSSSAYGAYFE  233
                   +L+ G PG A      A+S +  YG  F 
Sbjct  200574  RWHVLLRSG*PGTASAFSPRADSRACPYGGAFS  200672



Lambda      K        H        a         alpha
   0.322    0.139    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124969301158


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40