TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000002_2.0 # Protein # Iodothyronine deiodinase 1 (DIO1) #
Human

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01002288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2556, ...    154   1e-39
  JSZB01004262.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4833, ...    138   5e-34
  JSZB01004892.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5563, ...    134   9e-33
  JSZB01007008.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8055, ...  33.9    8.8  


> JSZB01002288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2556, 
whole genome shotgun sequence
Length=416281

 Score =   154 bits (389),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 114/192 (59%), Gaps = 5/192 (3%)
 Frame = +2

Query  57      SHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRC-NIWEFMQGNR  115
               S DN + T  S +  W   K+ + +       GG APN  VV   G R  +I ++ +G R
Sbjct  211028  SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPEGFRSQHILDYARGTR  211198

Query  116     PLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN-MDIRNH  174
               PLVLNFGSCT P FM +   F+RL+  +    DFL+IYIEEAH SDGW   ++   I  H
Sbjct  211199  PLVLNFGSCT*PPFMARMSAFQRLVTKYQHDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH  211378

Query  175     QNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWN  234
               +NL+DR+ AA +L   +P C +V+DTM N SS  Y A  ERLY++Q G I+Y+G  GP  
Sbjct  211379  RNLEDRVIAARVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVVQSGTIMYQGGRGPDG  211558

Query  235     YNPEEVRAVLEK  246
               Y   E+R  LE+
Sbjct  211559  YQVSELRFWLER  211594


> JSZB01004262.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4833, 
whole genome shotgun sequence
Length=249848

 Score =   138 bits (347),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 76/183 (42%), Positives = 105/183 (57%), Gaps = 22/183 (12%)
 Frame = -2

Query  86      TELGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTXP  127
                +LG  APN  VV +S                  G  C++ +F    RPLV+NFGS T P
Sbjct  176404  VKLGEDAPNSSVVHVSSREGGDNSGSGAQEKVTDGAECHLLDFAHPERPLVVNFGSAT*P  176225

Query  128     SFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN-NMDIRNHQNLQDRLQAAHL  186
                F  +   F+ L+++FSS+ADFL++YI+EAH SDGWA  + + +++ H+N +DR  AA  
Sbjct  176224  PFTSQLPAFRTLVDEFSSVADFLLVYIDEAHPSDGWAVPSLSFEVKKHRNQEDRCAAAQQ  176045

Query  187     LLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVRAV  243
               LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y G  GP+ YN +EVR  
Sbjct  176044  LLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFCYNLQEVRCW  175865

Query  244     LEK  246
               LEK
Sbjct  175864  LEK  175856


> JSZB01004892.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5563, 
whole genome shotgun sequence
Length=196381

 Score =   134 bits (338),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 95/115 (83%), Gaps = 5/115 (4%)
 Frame = +3

Query  1       MGLPQPGLWLKRlwvllevavhvvvgkvllilFPDRVKRNILAMGEKTGMTRNPHFSHDN  60
               MGLP+P L LKRLWVLL+VA+HV VGKVLL+L P RVK++ILAM +      NPHFS+DN
Sbjct  152874  MGLPRPALGLKRLWVLLQVALHVAVGKVLLVLCPGRVKQHILAMNKN-----NPHFSYDN  153038

Query  61      WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNR  115
               W PT +S QYFWF+LKVRWQRLED TE GGLAPNCPVV LSG+ CNIW+FMQG +
Sbjct  153039  WAPTLYSIQYFWFLLKVRWQRLEDKTEQGGLAPNCPVVHLSGRWCNIWDFMQGQQ  153203


 Score =   128 bits (322),  Expect = 8e-31, Method: Compositional matrix adjust.
 Identities = 62/77 (81%), Positives = 67/77 (87%), Gaps = 2/77 (3%)
 Frame = +1

Query  161     DGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQ  220
               DGWAFKNN+DIR H NLQDRL+AAHLLLARSPQCPVVVDTM+NQSSQ YAALPERLY++Q
Sbjct  163570  DGWAFKNNVDIRTHLNLQDRLRAAHLLLARSPQCPVVVDTMKNQSSQQYAALPERLYVLQ  163749

Query  221     EGRILYKGKSGPWNYNP  237
               EGRILY  K  PW   P
Sbjct  163750  EGRILY--KVVPWGREP  163794


 Score = 95.9 bits (237),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 45/48 (94%), Positives = 46/48 (96%), Gaps = 0/48 (0%)
 Frame = +2

Query  113     GNRPLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS  160
               GNRPLVLNFGSCT PSF+FKFDQFK LIEDFSSIADFLVIYIEEAHAS
Sbjct  159347  GNRPLVLNFGSCT*PSFLFKFDQFKGLIEDFSSIADFLVIYIEEAHAS  159490


 Score = 47.4 bits (111),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 20/24 (83%), Positives = 22/24 (92%), Gaps = 0/24 (0%)
 Frame = +3

Query  225     LYKGKSGPWNYNPEEVRAVLEKLH  248
               L +GK GPWNY+PEEVRAVLEKLH
Sbjct  165699  LLQGKPGPWNYHPEEVRAVLEKLH  165770


> JSZB01007008.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8055, 
whole genome shotgun sequence
Length=158563

 Score = 33.9 bits (76),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
 Frame = -2

Query  36      RVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFV  74
               RV+  +L++    GM  + HFS+   +PT+    YFW +
Sbjct  123120  RVRTALLSVACDLGMRSSLHFSYPVLLPTYLKNSYFWSI  123004



Lambda      K        H        a         alpha
   0.324    0.138    0.448    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102343540560


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40