Command line: [exonerate -m p2g --showtargetgff -q xpo1_hs.aa.fa.canviat -t genomexpo1_JXSJ01000048.1.fa] Hostname: [ws101182u] C4 Alignment: ------------ Query: SPP00002947_2.0 # Protein # exportin 1 (XPO1) # Human (Homo sapiens) Target: JXSJ01000048.1:subseq(482824,113300) Miichthys miiuy scaffold48, whole genome shotgun sequence Model: protein2genome:local Raw score: 4876 Query range: 0 -> 1071 Target range: 49999 -> 63300 1 : MetProAlaIleMetThrMetLeuAlaAspHisAlaAlaArgGlnLeuLeuAspPheSer : 20 ||||||||| !||||||||||||||||||||| !!|||||||||||||||||||||||| MetProAlaGluMetThrMetLeuAlaAspHisProAlaArgGlnLeuLeuAspPheSer 50000 : ATGCCAGCAGAAATGACGATGTTGGCGGATCACCCAGCCAGACAGCTGCTGGACTTCAGT : 50057 21 : GlnLysLeuAspIleAsnLeuLeuAspAsnValValAsnCysLeuTyrHisGlyGluGly : 40 |||||||||||||||||||||||||||||||||||||||! !:!!||||||! ! ||| GlnLysLeuAspIleAsnLeuLeuAspAsnValValAsnSerMetTyrHisAspIleGly 50058 : CAGAAACTGGACATCAACCTGTTGGACAATGTTGTCAACTCCATGTACCATGACATTGGA : 50117 41 : AlaGln >>>> Target Intron 1 >>>> GlnArgMetAlaGlnGluValLeuT : 51 :!!||| 247 bp ||||||:!!|||||||||||||||| SerGln++ ++GlnArgValAlaGlnGluValLeuT 50118 : TCCCAGgt.........................agCAACGAGTGGCCCAGGAAGTTCTCA : 50397 52 : hrHisLeuLysGluHisProAspAlaTrpThrArgValAspThrIleLeuGluPheSerG : 71 ||:!!||||||!!:|||||||||||||||||||||||||||||||||||||||||||||| hrAsnLeuLysAspHisProAspAlaTrpThrArgValAspThrIleLeuGluPheSerG 50398 : CCAACCTGAAGGACCATCCAGATGCCTGGACGAGGGTCGACACCATCCTTGAGTTCTCtc : 50457 72 : lnAsnMetAsnThrLys >>>> Target Intron 2 >>>> TyrTyrGlyLeuGl : 81 ||||||||...|||||| 1220 bp ||||||!.!||||| lnAsnMetLysThrLys++ ++TyrTyrAlaLeuGl 50458 : agaacatgaaaacaaaagt.........................agTACTATGCACTGCA : 51707 82 : nIleLeuGluAsnValIleLysThrArgTrpLysIleLeuProArgAsnGlnCysGlu{G : 101 ||||||||||!..|||||||||||||||||||||||||||||||||||||||||||||{| nIleLeuGluThrValIleLysThrArgTrpLysIleLeuProArgAsnGlnCysGlu{G 51708 : GATTCTGGAGACAGTCATCAAAACACGATGGAAGATTCTCCCTAGAAATCAGTGTGAA{G : 51767 102 : } >>>> Target Intron 3 >>>> {ly}IleLysLysTyrValValGlyLeuIl : 110 } 106 bp {||}|||||||||||||||||||||||||| }++ ++{ly}IleLysLysTyrValValGlyLeuIl 51768 : }gt.........................ag{GC}ATCAAGAAATATGTTGTTGGGTTGAT : 51900 111 : eIleLysThrSerSerAspProThrCysValGlu >>>> Target Intron 4 >>> : 122 ||||||||||||||||||||||.!! !:!!||| 90 bp eIleLysThrSerSerAspProAlaAsnMetGlu++ 51901 : CATTAAGACTTCGTCTGATCCCGCAAACATGGAGgt........................ : 51938 123 : > LysGluLysValTyrIleGlyLysLeuAsnMetIleLeuValGln >>>> Targe : 137 |||||| !|||||||||..!|||||||||||||||||||||||| ++LysGluGlyValTyrIleSerLysLeuAsnMetIleLeuValGln++ 51939 : .agAAAGAGGGAGTCTACATTTCAAAACTCAACATGATCCTTGTACaggt.......... : 52073 138 : t Intron 5 >>>> IleLeuLysGlnGluTrpProLysHisTrpProThrPheIleS : 151 95 bp ||||||||||||||||||||||||||||||||||||||||||| ++IleLeuLysGlnGluTrpProLysHisTrpProThrPheIleS 52074 : ...............agATCCTGAAGCAGGAATGGCCCAAACACTGGCCCACATTCATTA : 52208 152 : erAspIleValGlyAlaSerArgThrSerGluSerLeuCysGlnAsnAsnMetValIleL : 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||| erAspIleValGlyAlaSerArgThrSerGluSerLeuCysGlnAsnAsnMetIleIleL 52209 : GTGACATTGTGGGTGCAAGTCGGACCAGCGAGAGTCTCTGTCAGAACAACATGATCATCC : 52268 172 : euLysLeuLeuSerGluGluValPheAspPheSerSerGlyGlnIleThrGlnValLysS : 191 ||||||||||||||||||||||||||||||||||||||||||||!!:||||||||||||: euLysLeuLeuSerGluGluValPheAspPheSerSerGlyGlnMetThrGlnValLysA 52269 : TCAAACTGCTCAGCGAGGAGGTTTTTGACTTCTCCAGTGGCCAGATGACCCAGGTGAAGG : 52328 192 : erLysHisLeuLysAsp{Se} >>>> Target Intron 6 >>>> {r}MetCysA : 200 !!|||||||||||||||{||} 715 bp {|}||||||| laLysHisLeuLysAsp{Se}++ ++{r}MetCysA 52329 : CCAAGCACCTCAAAGAC{AG}gt.........................ag{c}atgTGCA : 53070 201 : snGluPheSerGlnIlePheGlnLeuCysGlnPheValMet >>>> Target Intro : 214 ||||||||||||||||||||||||||||||||||||||||| 96 bp snGluPheSerGlnIlePheGlnLeuCysGlnPheValMet++ 53071 : ACGAGTTCTCCCAAATATTCCAGCTGTGCCAGTTTGTGATGgt................. : 53114 215 : n 7 >>>> GluAsnSerGlnAsnAlaProLeuValHisAlaThrLeuGluThrLeuLe : 230 |||||||||||||||||||||||||||||||||||||||||||||||||| ++GluAsnSerGlnAsnAlaProLeuValHisAlaThrLeuGluThrLeuLe 53115 : ........agGAGAACTCGCAAAATGCCCCGCTGGTCCATGCCACGCTCGAGACTCTCCT : 53256 231 : uArgPheLeuAsnTrpIleProLeuGlyTyrIlePheGluThrLysLeuIleSerThrLe : 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uArgPheLeuAsnTrpIleProLeuGlyTyrIlePheGluThrLysLeuIleSerThrLe 53257 : CCGCTTCCTTAATTGGATTCCATTAGGTTATATCTTCGAGACTAAGCTCATCAGCACTCT : 53316 251 : uIleTyrLys >>>> Target Intron 8 >>>> PheLeuAsnValProMetPhe : 260 |:!!|||||| 556 bp ||||||||||||||||||||| uValTyrLys++ ++PheLeuAsnValProMetPhe 53317 : GGTCTACAAGgt.........................agttcTTGAACGTGCCCATGTTT : 53902 261 : ArgAsnValSerLeuLysCysLeuThrGluIleAlaGlyValSerValSerGlnTyrGlu : 280 |||||||||!!!||||||||||||||||||||||||||||||||||||!:!||||||||| ArgAsnValThrLeuLysCysLeuThrGluIleAlaGlyValSerValAsnGlnTyrGlu 53903 : CGCAACGTGACACTGAAATGTTTGACGGAGATTGCCGGAGTGAGCGTCAACCAGTACGAG : 53962 281 : GluGlnPheValThrLeuPheThrLeuThrMetMetGlnLeuLysGln >>>> Targe : 297 ||||||||||||!.!|||||||||||||||||| |||||||||||| 1 GluGlnPheValAsnLeuPheThrLeuThrMetCysGlnLeuLysGln++ 53963 : GAGCAGTTTGTCAACCTGTTTACCCTCACCATGTGCCAGCTcaaacaggt.......... : 54015 298 : t Intron 9 >>>> MetLeuProLeuAsnThrAsnIleArgLeuAlaTyrSerAsnG : 311 188 bp ||||||||||||||||||||||||||||||||||||:!!|||| ++MetLeuProLeuAsnThrAsnIleArgLeuAlaTyrAlaAsnG 54016 : ...............agATGCTGCCtttgaacacaaacatcagaCTGGCCTACGCCAACG : 55243 312 : lyLysAspAspGluGlnAsnPheIleGlnAsnLeuSerLeuPheLeuCysThrPheLeuL : 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyLysAspAspGluGlnAsnPheIleGlnAsnLeuSerLeuPheLeuCysThrPheLeuL 55244 : GGAAGGACGACGAGCAGAACTTCATCCAGAACCTCAGCCTGTTCCTCTGCACCTTCCTCA : 55303 332 : ysGluHisAspGlnLeuIleGluLysArgLeuAsnLeuArgGluThrLeuMetGlu >> : 350 ||||||||! !||||||||||||||||||! !|||||||||||||||||||||||| ysGluHisGlyGlnLeuIleGluLysArgProAsnLeuArgGluThrLeuMetGlu++ 55304 : AAGAACACGGCCAGCTCATTGAGAAGAGACCCAACCTGCGAGAGACACTCATGGAGgt.. : 55362 351 : >> Target Intron 10 >>>> AlaLeuHisTyrMetLeuLeuValSerGluValG : 361 1396 bp |||||||||||||||||||||||||||||||||| ++AlaLeuHisTyrMetLeuLeuValSerGluValG 55363 : ........................agGCCCTGCATTACATGCTGCTGGTgtcagaggtgg : 56789 362 : luGluThrGluIlePheLysIleCysLeuGluTyrTrpAsnHisLeuAlaAlaGluLeuT : 381 ||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||| luGluThrGluIlePheLysIleCysLeuGluTyrTrpAsnHisLeuAlaSerGluLeuT 56790 : aggagacggAGATCTTTAAGATCTGTCTGGAGTACTGGAACCACCTGGCATCTGAGCTCT : 56849 382 : yrArgGluSerProPheSerThrSerAlaSerProLeuLeuSerGlySerGlnHisPheA : 401 ||||||||||||||||||||||||||::!!!!|||||||||||| | yrArgGluSerProPheSerThrSerSerThrProLeuLeuSer---------------A 56850 : ACAGGGAGAGTCCGTTCTCCACCTCCAGCACCCCTCTGCTGTCT---------------G : 56894 402 : spValProProArgArgGlnLeuTyrLeuProMetLeuPheLys >>>> Target In : 416 |||||||||||||||||!!.||||||||||||:!:|||! !:!! 263 spValProProArgArgHisLeuTyrLeuProValLeuSerGln++ 56895 : ACGTCCCACCTCGCAGACACCTCTACCTGCCTGTACTCTCCCAGgt.............. : 56941 417 : tron 11 >>>> ValArgLeuLeuMetValSerArgMetAlaLysProGluGluValL : 431 bp |||||||||||||||||||||||||||||||||||||||||||||| ++ValArgLeuLeuMetValSerArgMetAlaLysProGluGluValL 56942 : ............agGTGCGTTTGCTGATGGTGAGCCGCATGGCCAAACCAGAGGAGGTGC : 57247 432 : euValValGluAsnAspGlnGlyGluValValArgGluPheMetLysAspThrAspSerI : 451 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!!| euValValGluAsnAspGlnGlyGluValValArgGluPheMetLysAspThrAspAlaI 57248 : TAGTAGTGGAGAACGACCAGGGCGAGGTGGTCAGGGAGTTCATGAAGGACACAGACGCCA : 57307 452 : leAsnLeuTyrLysAsnMetArgGluThrLeu{V} >>>> Target Intron 12 > : 462 ||||||||||||||||||||||||||||||||{|} 504 bp leAsnLeuTyrLysAsnMetArgGluThrLeu{V}++ 57308 : TTAACCTTTACAAGAACATGAGAGAGACTCTC{G}gt....................... : 57343 463 : >>> {al}TyrLeuThrHisLeuAspTyrValAspThrGluArgIleMetThrGluLys : 479 {||}|||||||||||||||||||||!.!||||||||||||||||||||||||||| ++{al}TyrLeuThrHisLeuAspTyrAlaAspThrGluArgIleMetThrGluLys 57344 : ...ag{TG}TATCTGACCCATCTGGACTATGCTGACACTGAACGCATCATGACAGAGAAG : 57895 480 : LeuHisAsnGlnValAsnGlyThrGluTrpSerTrpLysAsnLeuAsnThrLeuCysTrp : 499 ||||||||||||||||||||||||||||||||||||!:!|||||||||! !||||||||| LeuHisAsnGlnValAsnGlyThrGluTrpSerTrpArgAsnLeuAsnMetLeuCysTrp 57896 : CTCCACAACCAGGTAAACGGCACTGAGTGGTCGTGGAGGAACCTGAACATGCTTTGCTGG : 57955 500 : AlaIleGlySerIleSerGlyAlaMetHisGluGluAspGluLysArgPheLeuValThr : 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaIleGlySerIleSerGlyAlaMetHisGluGluAspGluLysArgPheLeuValThr 57956 : GCCATCGGCTCCATCAGCGGGGCAATGCATGAGGAGGACGAAAAGAGGTTCCTGGTCACT : 58015 520 : ValIleLys >>>> Target Intron 13 >>>> AspLeuLeuGlyLeuCysGlu : 529 ||||||||| 114 bp ||||||||||||||||||||| ValIleLys++ ++AspLeuLeuGlyLeuCysGlu 58016 : GTCATCAAggt..........................agGACCTGCTGGGCTTGTGTGAG : 58159 530 : GlnLysArgGlyLysAspAsnLysAlaIleIleAlaSerAsnIleMetTyrIleValGly : 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnLysArgGlyLysAspAsnLysAlaIleIleAlaSerAsnIleMetTyrIleValGly 58160 : cagaaaagagggaaagacaATAAGGCCATCATAGCATCCAACATCATGTACATTGTGGGC : 58219 550 : GlnTyrProArgPheLeuArgAlaHisTrpLysPheLeuLysThrValValAsnLysLeu : 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnTyrProArgPheLeuArgAlaHisTrpLysPheLeuLysThrValValAsnLysLeu 58220 : CAGTATCCTCGCTTTCTCCGAGCCCACTGGAAGTTCCTCAAGACTGTCGTCAACAAGCTG : 58279 570 : PheGluPheMetHis{G} >>>> Target Intron 14 >>>> {lu}ThrHisAs : 578 |||||||||||||||{|} 246 bp {||}|||||||| PheGluPheMetHis{G}++ ++{lu}ThrHisAs 58280 : TTTGAGTTCATGCAC{G}gt..........................ag{AG}ACTCACGA : 58552 579 : pGlyValGlnAspMetAlaCysAspThrPheIleLysIleAlaGlnLysCysArgArgHi : 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pGlyValGlnAspMetAlaCysAspThrPheIleLysIleAlaGlnLysCysArgArgHi 58553 : TGGTGTGCAGGACATGGCGTGTGACACCTTCATCAAGATTGCCCAGAAGTGTCGCCGTCA : 58612 599 : sPheValGlnValGlnValGlyGluValMetProPheIleAspGluIleLeuAsnAsnIl : 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sPheValGlnValGlnValGlyGluValMetProPheIleAspGluIleLeuAsnAsnIl 58613 : TTTTGTCCAGGTTCAGGTGGGCGAGGTGATGCCCTTCATCGACGAGATCctcaacaacat : 58672 619 : eAsnThrIleIleCysAspLeuGlnProGlnGln >>>> Target Intron 15 >> : 630 |||||||||||||||||||||||||||||||||| 142 bp eAsnThrIleIleCysAspLeuGlnProGlnGln++ 58673 : caacacaatCATCTGTGACCTGCAGCCACAGCAGgt........................ : 58710 631 : >> ValHisThrPheTyrGluAlaValGlyTyrMetIleGlyAlaGlnThrAspGlnTh : 648 ||||||||||||||||||||||||||||||||||||!.!||||||!.!||||||.! ++ValHisThrPheTyrGluAlaValGlyTyrMetIleAlaAlaGlnAsnAspGlnAl 58711 : ..agGTCCACACGTTTTATGAGGCCGTTGGCTACATGATCGCAGCACAGAATGACCAGGC : 58904 649 : rValGlnGluHisLeuIleGluLysTyrMetLeuLeuProAsnGlnValTrpAspSerIl : 668 !|||||||||! !:!!|||||||||||||||||||||||||||||||||||||||||||| aValGlnGluLeuValIleGluLysTyrMetLeuLeuProAsnGlnValTrpAspSerIl 58905 : TGTTCAGGAGCTTGTGATAGAGAAGTACATGCTGCTGCCAAATCAAGTGTGGGACAGCAT : 58964 669 : eIleGlnGlnAlaThrLys >>>> Target Intron 16 >>>> AsnValAspIl : 678 ||||||||||||||||||| 101 bp ||||||||||| eIleGlnGlnAlaThrLys++ ++AsnValAspIl 58965 : CATCCAGCAGGCCACCAAGgt..........................agAATGTGGACAT : 59095 679 : eLeuLysAspProGluThrValLysGlnLeuGlySerIleLeuLysThrAsnValArgAl : 698 |||||||||| !!|||||||||:::||||||||||||||||||||||||||||||||||| eLeuLysAspAlaGluThrValArgGlnLeuGlySerIleLeuLysThrAsnValArgAl 59096 : CCTGAAGGACGCAGAAACTGTGCGTCAGCTGGGCAGCATCCTAAAGACAAATGTCAGAGC : 59155 699 : aCysLysAlaValGlyHisProPheValIleGlnLeuGlyArgIleTyrLeuAspMetLe : 718 ||||||||||||||||||||||||||||:!!||||||||||||||||||||||||||||| aCysLysAlaValGlyHisProPheValValGlnLeuGlyArgIleTyrLeuAspMetLe 59156 : CTGTAAAGCTGTTGGTCATCCCTTTGTTGTCCAGCTGGGACGAATCTACCTGGACATGCT : 59215 719 : uAsnValTyrLysCysLeuSerGluAsnIleSerAlaAlaIleGlnAlaAsn{G} >>> : 736 ||||||||||||||||||||||||||||||||||:!!|||:!!|||.!!|||{|} uAsnValTyrLysCysLeuSerGluAsnIleSerSerAlaValGlnThrAsn{G}++ 59216 : CAACGTCTACAAGTGCCTGAGTGAAAACATCTCCTCAGCTGTACAGACCAAC{G}gt... : 59272 737 : > Target Intron 17 >>>> {ly}GluMetValThrLysGlnProLeuIleArgS : 747 732 bp {||}||||||||||||||||||||||||||||||| ++{ly}GluMetValThrLysGlnProLeuIleArgS 59273 : .......................ag{GT}GAGATGGTGACCAAACAGCCTCTGATCCGGA : 60034 748 : erMetArgThrValLysArgGluThrLeuLysLeuIleSerGlyTrpValSerArgSerA : 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erMetArgThrValLysArgGluThrLeuLysLeuIleSerGlyTrpValSerArgSerA 60035 : GCATGAGGACAGTAAAGAGAGAGACGTTGAAGCTGATCTCAGGCTGGGTCAGTCGCTCCA : 60094 768 : snAspProGlnMet >>>> Target Intron 18 >>>> ValAlaGluAsnPheV : 777 |||||||||||||| 553 bp |||||||||||||||| snAspProGlnMet++ ++ValAlaGluAsnPheV 60095 : ATGACCCTCAGATGgt..........................agGTGGCAGAAAACTTTG : 60677 778 : alProProLeuLeuAspAlaValLeuIleAspTyrGlnArgAsnValProAlaAlaArgG : 797 ||||||||||||||!!:||||||||||||||||||||||||||||||||||||||||||| alProProLeuLeuGluAlaValLeuIleAspTyrGlnArgAsnValProAlaAlaArgG 60678 : TGCCCCCCCTGCTGGAGGCGGTGCTCATCGACTACCAGAGGAACGTCCCAGCTGCCCGAG : 60737 798 : luProGluValLeuSerThrMetAlaIleIleValAsnLysLeuGlyGlyHisIleThrA : 817 ||||||||||||||||||||||||||! !||||||||||||||||||! !|||||||||! luProGluValLeuSerThrMetAlaThrIleValAsnLysLeuGlyValHisIleThrG 60738 : AGCCAGAGGTCCTCAGCACCATGGCAACCATCGTCAACAAGCTTGGAGTCCACATAACAG : 60797 818 : laGluIleProGlnIlePheAspAlaValPheGluCysThrLeuAsnMetIleAsnLys : 837 .!|||||||||:!!||||||||||||||||||||||||||||||||||||||||||||| lyGluIleProLysIlePheAspAlaValPheGluCysThrLeuAsnMetIleAsnLys+ 60798 : GAGAAATCCCCAAGATCTTTGACGCCGTCTTTGAGTGCACATTGAACATGATCAACAAGg : 60857 838 : >>>> Target Intron 19 >>>> AspPheGluGluTyrProGluHisArgThrA : 847 116 bp ||||||||||||!:!|||||||||||||||: + ++AspPheGluGluPheProGluHisArgThrH 60858 : t..........................agGACTTTGAAGAATTTCCAGAGCACAGAACTC : 61003 848 : snPhePheLeuLeuLeuGlnAlaValAsnSerHisCysPheProAlaPheLeuAlaIleP : 867 !!||||||! !||||||||||||!.!!.!|||!!.||||||||||||||||||:!!||| isPhePheTyrLeuLeuGlnAlaAlaThrSerGlnCysPheProAlaPheLeuSerIleA 61004 : ATTTCTTCTACCTCCTTCAAGCTGCCACCTCCCAGTGTTTCCCAGCCTTCCTGTCCATCG : 61063 868 : roProThrGlnPheLysLeuValLeuAspSerIleIleTrpAlaPheLysHisThrMetA : 887 !!|||.!!||||||||||||:!!||||||||||||||||||||||||||||||||||||| laProAlaGlnPheLysLeuIleLeuAspSerIleIleTrpAlaPheLysHisThrMetA 61064 : CCCCAGCCCAGTTCAAACTAATCCTAGACTCCATCATCTGGGCCTTCAAGCACACGATGA : 61123 888 : rgAsnValAlaAspThr{G} >>>> Target Intron 20 >>>> {ly}LeuGln : 895 |||||||||||||||||{|} 260 bp {||}|||||| rgAsnValAlaAspThr{G}++ ++{ly}LeuGln 61124 : GGAATGTGGCTGACACA{G}gt..........................ag{GT}CTACAG : 61407 896 : IleLeuPheThrLeuLeuGlnAsnValAlaGlnGluGluAlaAlaAlaGlnSerPheTyr : 915 |||||||||||||||||||||||||||:!: ||||||||||||||||||||||||||| IleLeuPheThrLeuLeuGlnAsnValSerGlyGluGluAlaAlaAlaGlnSerPheTyr 61408 : ATCCTGTTCACTCTCCTGCAAAACGTGTCtggagaggaggcagcagcacagagcttcTAC : 61467 916 : GlnThrTyrPheCysAspIleLeuGlnHisIlePheSerValValThrAspThrSerHis : 935 ||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||||| GlnThrTyrPheCysAspValLeuGlnHisIlePheSerValValThrAspThrSerHis 61468 : CAGACGTACTTCTGTGATGTCCTGCAACACATCTTCTCTGTGGTCACGGATACCTCTCAC : 61527 936 : ThrAla{G} >>>> Target Intron 21 >>>> {ly}LeuThrMetHisAlaSe : 944 ||||||{|} 203 bp {||}|||||||||||||||!! ThrAla{G}++ ++{ly}LeuThrMetHisAlaTh 61528 : ACTGCA{G}gt..........................ag{GT}CTGACGATGCACGCCAC : 61757 945 : rIleLeuAlaTyrMetPheAsnLeuValGluGluGlyLysIleSerThrSerLeuAsnPr : 964 !||||||||||||||||||||||||||||||!!:||||||:!!|||..!:!!|||!:! ! rIleLeuAlaTyrMetPheAsnLeuValGluAspGlyLysValSerValAlaLeuSerAl 61758 : CATCTTGGCCTACATGTTTAACCTGGTGGAGGATGGGAAGGTCAGTGTCGCTCTGAGCGC : 61817 965 : oGlyAsnProValAsnAsnGlnIlePheLeuGlnGluTyrValAlaAsnLeuLeuLysSe : 984 !!.!!:!|||!.!||||||||| !:!!|||||||||:!!|||||||||||||||!! aAlaSerProAlaAsnAsnGlnAlaHisValGlnGluTyrIleAlaAsnLeuLeuLysTh 61818 : CGCCAGTCCGGCCAACAACCAGGCGCACGTCCAGGAGTATATCGCTAACCTGCTGAAGAC : 61877 985 : rAlaPheProHisLeuGln{As} >>>> Target Intron 22 >>>> {p}AlaG : 993 !||||||||||||||||||{||} 416 bp {|}|||| rAlaPheProHisLeuGln{As}++ ++{p}AlaG 61878 : GGCCTTCCCCCATCTGCAA{GA}gt..........................ag{T}GCCC : 62320 994 : lnValLysLeuPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAlaPheLysG : 1013 ||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||| lnValLysValPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAlaPheLysG 62321 : AGGTGAAGGTGTTTGTAACGGGTCTGTTCAGCCTGAACCAGGACATCCCCGCCTTCAAAG : 62380 1014 : luHisLeuArgAspPheLeuValGlnIleLys >>>> Target Intron 23 >>>> : 1024 |||||||||||||||||||||||||||||||| 744 bp luHisLeuArgAspPheLeuValGlnIleLys++ 62381 : AGCACCTGAGGGACTTCCTCGTGCAGATCAAGgt.......................... : 62415 1025 : GluPheAlaGlyGluAspThrSerAspLeuPheLeuGluGluArgGluIleAlaLeuA : 1043 |||||||||||||||||||||!!!|||||||||||||||||||||||| ||||||| ++GluPheAlaGlyGluAspThrThrAspLeuPheLeuGluGluArgGluThrAlaLeuA 62416 : agGAGTTTGCTGGCGAGGACACGACGGACCTGTtcctggaggagagggagacggCTCTGC : 63214 1044 : rgGlnAlaAspGluGluLysHisLysArgGlnMetSerValProGlyIlePheAsnProH : 1063 ||||||||...|||||||||||||||! !|||||||||||||||||||||.!!||||||| rgGlnAlaGlnGluGluLysHisLysLeuGlnMetSerValProGlyIleLeuAsnProH 63215 : GCCAAGCCcaggaggagaaacacaagCTCCAGATGTCAGTGCCCGGCATCCTCAACCCTC : 63274 1064 : isGluIleProGluGluMetCysAsp : 1071 |||||:!:|||||||||||||||||| isGluLeuProGluGluMetCysAsp 63275 : ATGAGCTGCCAGAGGAGATGTGTGAC : 63300 vulgar: SPP00002947_2.0 0 1071 . JXSJ01000048.1:subseq(482824,113300) 49999 63300 + 4876 M 42 126 5 0 2 I 0 243 3 0 2 M 34 102 5 0 2 I 0 1216 3 0 2 M 24 72 S 0 1 5 0 2 I 0 102 3 0 2 S 1 2 M 20 60 5 0 2 I 0 86 3 0 2 M 15 45 5 0 2 I 0 91 3 0 2 M 60 180 S 0 2 5 0 2 I 0 711 3 0 2 S 1 1 M 16 48 5 0 2 I 0 92 3 0 2 M 40 120 5 0 2 I 0 552 3 0 2 M 43 129 5 0 2 I 0 1184 3 0 2 M 53 159 5 0 2 I 0 1392 3 0 2 M 46 138 G 5 0 M 15 45 5 0 2 I 0 259 3 0 2 M 46 138 S 0 1 5 0 2 I 0 500 3 0 2 S 1 2 M 60 180 5 0 2 I 0 110 3 0 2 M 52 156 S 0 1 5 0 2 I 0 242 3 0 2 S 1 2 M 54 162 5 0 2 I 0 138 3 0 2 M 45 135 5 0 2 I 0 97 3 0 2 M 61 183 S 0 1 5 0 2 I 0 728 3 0 2 S 1 2 M 35 105 5 0 2 I 0 549 3 0 2 M 65 195 5 0 2 I 0 112 3 0 2 M 56 168 S 0 1 5 0 2 I 0 256 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 199 3 0 2 S 1 2 M 52 156 S 0 2 5 0 2 I 0 412 3 0 2 S 1 1 M 32 96 5 0 2 I 0 740 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local gene 50000 63300 4876 + . gene_id 1 ; sequence SPP00002947_2.0 ; gene_orientation + JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 50000 50125 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 50000 50125 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 50126 50127 . + . intron_id 1 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 50126 50372 . + . intron_id 1 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 50371 50372 . + . intron_id 0 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 50373 50474 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 50373 50474 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 50475 50476 . + . intron_id 2 ; splice_site "gt" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 50475 51694 . + . intron_id 2 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 51693 51694 . + . intron_id 1 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 51695 51767 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 51695 51767 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 51768 51769 . + . intron_id 3 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 51768 51873 . + . intron_id 3 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 51872 51873 . + . intron_id 2 ; splice_site "ag" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 51874 51935 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 51874 51935 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 51936 51937 . + . intron_id 4 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 51936 52025 . + . intron_id 4 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 52024 52025 . + . intron_id 3 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 52026 52070 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 52026 52070 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 52071 52072 . + . intron_id 5 ; splice_site "gt" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 52071 52165 . + . intron_id 5 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 52164 52165 . + . intron_id 4 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 52166 52347 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 52166 52347 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 52348 52349 . + . intron_id 6 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 52348 53062 . + . intron_id 6 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 53061 53062 . + . intron_id 5 ; splice_site "ag" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 53063 53111 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 53063 53111 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 53112 53113 . + . intron_id 7 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 53112 53207 . + . intron_id 7 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 53206 53207 . + . intron_id 6 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 53208 53327 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 53208 53327 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 53328 53329 . + . intron_id 8 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 53328 53883 . + . intron_id 8 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 53882 53883 . + . intron_id 7 ; splice_site "ag" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 53884 54012 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 53884 54012 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 54013 54014 . + . intron_id 9 ; splice_site "gt" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 54013 55200 . + . intron_id 9 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 55199 55200 . + . intron_id 8 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 55201 55359 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 55201 55359 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 55360 55361 . + . intron_id 10 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 55360 56755 . + . intron_id 10 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 56754 56755 . + . intron_id 9 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 56756 56938 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 56756 56938 . + . insertions 0 ; deletions 5 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 56939 56940 . + . intron_id 11 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 56939 57201 . + . intron_id 11 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 57200 57201 . + . intron_id 10 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 57202 57340 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 57202 57340 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 57341 57342 . + . intron_id 12 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 57341 57844 . + . intron_id 12 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 57843 57844 . + . intron_id 11 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 57845 58026 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 57845 58026 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 58027 58028 . + . intron_id 13 ; splice_site "gt" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 58027 58140 . + . intron_id 13 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 58139 58140 . + . intron_id 12 ; splice_site "aG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 58141 58297 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 58141 58297 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 58298 58299 . + . intron_id 14 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 58298 58543 . + . intron_id 14 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 58542 58543 . + . intron_id 13 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 58544 58707 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 58544 58707 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 58708 58709 . + . intron_id 15 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 58708 58849 . + . intron_id 15 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 58848 58849 . + . intron_id 14 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 58850 58984 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 58850 58984 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 58985 58986 . + . intron_id 16 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 58985 59085 . + . intron_id 16 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 59084 59085 . + . intron_id 15 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 59086 59269 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 59086 59269 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 59270 59271 . + . intron_id 17 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 59270 60001 . + . intron_id 17 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 60000 60001 . + . intron_id 16 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 60002 60108 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 60002 60108 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 60109 60110 . + . intron_id 18 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 60109 60661 . + . intron_id 18 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 60660 60661 . + . intron_id 17 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 60662 60856 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 60662 60856 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 60857 60858 . + . intron_id 19 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 60857 60972 . + . intron_id 19 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 60971 60972 . + . intron_id 18 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 60973 61141 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 60973 61141 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 61142 61143 . + . intron_id 20 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 61142 61401 . + . intron_id 20 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 61400 61401 . + . intron_id 19 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 61402 61536 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 61402 61536 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 61537 61538 . + . intron_id 21 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 61537 61739 . + . intron_id 21 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 61738 61739 . + . intron_id 20 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 61740 61899 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 61740 61899 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 61900 61901 . + . intron_id 22 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 61900 62315 . + . intron_id 22 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 62314 62315 . + . intron_id 21 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 62316 62412 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 62316 62412 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice5 62413 62414 . + . intron_id 23 ; splice_site "GT" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local intron 62413 63156 . + . intron_id 23 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local splice3 63155 63156 . + . intron_id 22 ; splice_site "AG" JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local cds 63157 63300 . + . JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local exon 63157 63300 . + . insertions 0 ; deletions 0 JXSJ01000048.1:subseq(482824,113300) exonerate:protein2genome:local similarity 50000 63300 4876 + . alignment_id 1 ; Query SPP00002947_2.0 ; Align 50000 1 126 ; Align 50373 43 102 ; Align 51695 77 72 ; Align 51876 102 60 ; Align 52026 122 45 ; Align 52166 137 180 ; Align 53064 198 48 ; Align 53208 214 120 ; Align 53884 254 129 ; Align 55201 297 159 ; Align 56756 350 138 ; Align 56894 401 45 ; Align 57202 416 138 ; Align 57847 463 180 ; Align 58141 523 156 ; Align 58546 576 162 ; Align 58850 630 135 ; Align 59086 675 183 ; Align 60004 737 105 ; Align 60662 772 195 ; Align 60973 837 168 ; Align 61404 894 132 ; Align 61742 939 156 ; Align 62317 992 96 ; Align 63157 1024 144 # --- END OF GFF DUMP --- # -- completed exonerate analysis