Command line: [exonerate -m p2g --showtargetgff -q txnrd3_zf.aa.fa.canviat -t genometxnrd3_JXSJ01000728.1.fa] Hostname: [ws116078U] C4 Alignment: ------------ Query: SPP00000661_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Target: JXSJ01000728.1:subseq(83825,59425) Miichthys miiuy scaffold728, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2353 Query range: 59 -> 611 Target range: 59272 -> 49999 60 : GluAspGlyThrAsnTyrGlnAspLeuLeuHisGluMetThrGlyGlnLysThrValPro : 79 ||||||||||||||||||! !!::!!||| !||||||||||||||||||||||||||| GluAspGlyThrAsnTyrLeuGluMetLeuIleGluMetThrGlyGlnLysThrValPro 59272 : GAGGATGGAACCAACTACCTTGAGATGCTGATCGAGATGACTGGACAGAAAACCGTCCCC : 59215 80 : AsnValPheIleAsnLysLysHisIleGlyGlyCysAspAsnThrMetLys >>>> Ta : 97 !:!:!!||||||||||||! !|||.!!|||! !|||..!!!.||||||:!! SerIlePheIleAsnLysThrHisPheGlyAspCysSerLysThrMetGln++ 59214 : AGCATCTTCATCAACAAGACGCATTTCGGTGACTGTAGCAAAACAATGCAGgt....... : 59159 98 : rget Intron 1 >>>> AlaHisLysAspGlyValLeuGlnLysLeuLeuGlyGluG : 110 629 bp ||||||:!!|||||| ||||||:::||||||...! !! ++AlaHisGlnAspGlySerLeuGlnGlnLeuLeuSerGlyG 59158 : ..................agGCTCACCAAGACggcagcctgcagcagctgctgagtGGAG : 58493 111 : lySerGluValTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeuAlaC : 130 !!:!:!!!.!||||||||||||||||||||||||||||||||||||||||||||||||| luAsnLysAlaTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeuAlaC 58492 : AGAACAAGGCTTATGACTATGACTTGATTGTCATCGGAGGAGGATCTGGAGGCCTCGCCT : 58433 131 : ysSerLys >>>> Target Intron 2 >>>> AlaThrAlaThrLeuGlyLysLy : 140 |||||||| 206 bp ! !.!!|||! !||||||||||| ysSerLys++ ++GluAlaAlaMetLeuGlyLysLy 58432 : GCTCAAAGgt.........................agGAAGCTGCCATGTTGGGGAAGAA : 58197 141 : sValMetValLeuAspTyrValValProThrProGlnGlyThrAlaTrp{G} >>>> T : 157 |..!||||||||||||||||||||||||||||||:!!|||.!!:!!|||{|} sThrMetValLeuAspTyrValValProThrProLysGlyAlaSerTrp{G}++ 58196 : GACCATGGTACTGGACTATGTCGTGCCCACACCGAAGGGAGCCTCCTGG{G}gt...... : 58143 158 : arget Intron 3 >>>> {ly}LeuGlyGlyThrCysValAsnValGlyCysIlePr : 169 86 bp {||}||||||||||||||||||||||||||||||||||| ++{ly}LeuGlyGlyThrCysValAsnValGlyCysIlePr 58142 : ...................ag{GT}CTCGGTGGAACATGTGTGAACGTGGGCTGCATTCC : 58024 170 : oLysLysLeuMetHisGlnThrAlaLeuLeuGlyThrAlaMetGluAspAlaArgLysPh : 189 |||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||| oLysLysLeuMetHisGlnThrAlaLeuLeuGlyThrAlaMetGlnAspAlaArgLysPh 58023 : CAAGAAGCTGATGCACCAGACAGCCTTGCTGGGCACCGCCATGCAGGACGCGCGCAAGTT : 57964 190 : eGlyTrpGluPheAlaGluGln{V} >>>> Target Intron 4 >>>> {al}Th : 198 |||||||||||||! !||| !{|} 136 bp {||}! eGlyTrpGluPheAspGluThr{V}++ ++{al}Ly 57963 : TGGCTGGGAGTTTGACGAGACA{G}gt.........................ag{TG}AA : 57801 199 : rHisAsnTrpGluThrMetLysThrAlaValAsnAsnTyrIleGlySerLeuAsnTrpGl : 218 !|||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||| sHisAsnTrpGluThrMetLysSerAlaValAsnAsnTyrIleGlySerLeuAsnTrpGl 57800 : ACACAACTGGGAGACGATGAAGTCGGCGGTGAACAACTACATTGGCTCATTGAACTGGGG : 57741 219 : yTyrArgValSerLeuArgAspLysAsnValAsnTyrValAsnAlaTyrAlaGluPheVa : 238 ||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||:! yTyrArgValAlaLeuArgAspLysAsnValAsnTyrValAsnAlaTyrAlaGluPheIl 57740 : CTACAGGGTGGCACTGAGAGACAAGAACGTCAATTATGTCAACGCCTATGCAGAGTTCAT : 57681 239 : lGluProHisLysIleLysAlaSer >>>> Target Intron 5 >>>> AlaThr : 248 !!!:||||||||||||||| 366 bp |||||| eAspProHisLysIleLys------++ ++AlaThr 57680 : TGATCCTCATAAAATCAAG------gt.........................agGCAACA : 57291 249 : AsnLysArgGlyLysGluThrPheTyrThrAlaAlaGlnPheValLeuAlaThrGlyGlu : 268 ||||||||||||||||||||||||||||||||||||:!!|||:!!||||||||||||||| AsnLysArgGlyLysGluThrPheTyrThrAlaAlaLysPheIleLeuAlaThrGlyGlu 57290 : AACAAACGGGGAAAGgagacattttacacagcgGCTAAGTTTATCTTAGCTACGGGCGAG : 57231 269 : ArgProArgTyrLeuGlyIleProGlyAspLysGluPheCysIleThr{Se} >>>> T : 285 ||||||||||||||||||||||||||||||||||||!:!|||||||||{||} ArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCysIleThr{Se}++ 57230 : AGGCCGCGCTACCTGGGCATCCCTGGAGACAAGGAGTACTGCATCACC{AG}gt...... : 57176 286 : arget Intron 6 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLys : 297 578 bp {|}|||||||||||||||||| !!||||||||||||||| ++{r}AspAspLeuPheSerLeuSerTyrCysProGlyLys 57175 : ...................ag{T}GACGACCTCTTCTCGTTGTCCTACTGCCCGGGAAAG : 56566 298 : ThrLeuValValGlyAlaSerTyrValAlaLeuGluCysGlyGlyPheLeuAlaGlyLeu : 317 |||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||| ThrLeuValIleGlyAlaSerTyrValAlaLeuGluCysGlyGlyPheLeuAlaGlyLeu 56565 : ACCCTGGTGATCGGGGCGTCGTACGTGGCGCTGGAGTGCGGCGGCTTCCTGGCCGGCCTG : 56506 318 : GlyLeuAspValThrIleMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMet : 337 |||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||| GlyLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMet 56505 : GGTCTTGACGTCACCGTCATGGTCCGGTCCATCCTGCTGAGGGGCTTCGACCAGGACATG : 56446 338 : AlaAspArgAlaGlyGluTyrMetGluThrHisGlyValLysPheLeuArgLysPheVal : 357 |||:!!||||||||||||:!!|||||| !||||||||||||||||||||||||!:!||| AlaAsnArgAlaGlyGluHisMetGluGluHisGlyValLysPheLeuArgLysTyrVal 56445 : GCCAACCGCGCTGGAGAGCACATGGAGGAGCACGGCGTAAAGTTCCTCCGCAAATATGTC : 56386 358 : ProThrLys{Va} >>>> Target Intron 7 >>>> {l}GlyCysIlePhePro : 366 |||! !|||{||} 72 bp {|} ProIleLys{Va}+- ++{l}HisValCysValCys 56385 : CCCATAAAG{GT}ga.........................ag{a}catgtctgtgtgtgt : 56287 367 : GlnIleGluGlnLeuGluAlaGlyThrProGlyArgIleLysValThrAlaLysSerThr : 386 |||:::|||:::||||||||||||||||||||||||:!:||||||||||||||||||||| GlnValGluGluLeuGluAlaGlyThrProGlyArgLeuLysValThrAlaLysSerThr 56286 : caggtggaggagctggaagCAGGCACTCCTGGCAGGCTGAAGGTGACAGCGAAGTCCACA : 56227 387 : GluSerGluGluValPheGluGlyGluTyrAsnThr >>>> Target Intron 8 > : 399 |||!!!!!:|||:!!.!!|||||||||||||||||| 1362 bp GluThrAspGluIleIleGluGlyGluTyrAsnThr++ 56226 : GAAACCGATGAGATCATCGAGGGAGAGTACAACACCgt...................... : 56186 400 : >>> ValLeuIleAlaValGlyArgAspAlaCysThrGlyLysIleGlyLeuAspLysA : 417 |||||||||||||||||||||||||||||||||! !||||||||||||||||||. ++ValLeuIleAlaValGlyArgAspAlaCysThrAspLysIleGlyLeuAspLysT 56185 : ...agGTCTTGATAGCAGTGGGCCGAGACGCGTGCACGGACAAGATTGGCCTGGACAAGA : 54772 418 : laGlyValLysIleAsnGlu{Ly} >>>> Target Intron 9 >>>> {s}AsnG : 426 !!|||||||||:!!||| {||} 864 bp {|}|||| hrGlyValLysValAsnPro{Ly}++ ++{s}AsnG 54771 : CAGGGGTCAAAGTCAACCCT{AA}gt.........................ag{G}AATG : 53881 427 : lyLysValProValAsnAspGluGluGlnThrAsnValProHisIleTyrAlaIleGlyA : 446 |||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||| lyLysIleProValAsnAspGluGluGlnThrAsnValProHisIleTyrAlaIleGlyA 53880 : GAAAAATCCCAGTGAACGATGAAGAGCAGACCAACGTGCCCCACATCTACGCCATTGGAG : 53821 447 : spIleLeuGluGlyLysTrpGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuA : 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| spIleLeuGluGlyLysTrpGluLeuThrProValAlaIleGlnAlaGlyLysLeuLeuA 53820 : ACATTCTGGAAGGCAAGTGGGAGCTGACACCTGTCGCCATCCAGGCTGGCAAGCTGCTGG : 53761 467 : laArgArgLeuTyrAlaGlyAlaThrMetLys >>>> Target Intron 10 >>>> : 477 |||||||||||||||||||||||! !:!:||| 522 bp laArgArgLeuTyrAlaGlyAlaLysLeuLys++ 53760 : CACGACGCCTCTACGCAGGCGCCAAACTCAAGgt.......................... : 53726 478 : CysAspTyrValAsnValProThrThrValPheThrProMetGluTyrGlySerCysG : 496 |||||||||:!!|||||||||||||||||||||||||||:!!|||||||||:!!|||| ++CysAspTyrIleAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysG 53725 : agtgtgaCTACATCAACGTTCCCACCACCGTCTTCACCCCGCTGGAGTACGGTGCCTGCG : 53149 497 : lyHisProGluGluLysAlaIleGlnMetTyrGlyGlnGluAsnLeuGlu >>>> Tar : 513 ||! !!||||||!:!|||! !:!!:!!|||||||||!!:|||:!:||| lyLeuSerGluGluArgAlaThrGluLeuTyrGlyGlnAspAsnIleGlu++ 53148 : GTCTGTCAGAGGAGAGAGCCACCGAGCTGTACGGGCAGGACAACATcgaggt........ : 53096 514 : get Intron 11 >>>> ValTyrHisSerLeuPheTrpProLeuGluPheThrValP : 526 1140 bp |||:::|||||||||||||||||||||||||||||||||| ++ValPheHisSerLeuPheTrpProLeuGluPheThrValP 53095 : ..................aggtgttccACAGTCTGTTCTGGCCTCTGGAGTTCACCGTGC : 51919 527 : roGlyArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnLysLeuAspAsn >> : 545 |||||||||||||||||!:!|||||||||||||||||||||||||||||||||!:! roGlyArgAspAsnAsnArgCysTyrAlaLysIleIleCysAsnLysLeuAspSer++ 51918 : CCGGCAGAGACAACAACAGATGCTACGCCAAGATCATCTGCAATAAACTGGACAGCgt.. : 51860 546 : >> Target Intron 12 >>>> LeuArgValIleGlyPheHisTyrLeuGlyProA : 556 113 bp !||||||||||||||||||||||||||||||| ++AspArgValIleGlyPheHisTyrLeuGlyProA 51859 : ........................agGACCGAGTCATTGGGTTCCACTATCTGGGTCCAA : 51716 557 : snAlaGlyGluValThrGlnGlyPheGlyAlaAlaMetLysCysGlyIleThrLysAspG : 576 ||||||||||||||||||||||||||||| !||||||||||||||| !||||||!!:| snAlaGlyGluValThrGlnGlyPheGlyIleAlaMetLysCysGlyAlaThrLysGluG 51715 : ATGCCGGAGAGGTGACGCAGGGCTTCGGCATAGCCATGAAATGCGGCGCCACTAAAGAGC : 51656 577 : lnLeuAspAsnThrIleGlyIleHisProThrCysAlaGlu >>>> Target Intro : 590 ||||||||!:!|||||||||||||||||||||||||||||| 1549 bp lnLeuAspSerThrIleGlyIleHisProThrCysAlaGlu++ 51655 : AGCTGGACAGCACCATCGGCATCCACCCGACCTGTGCTGAGgt................. : 51612 591 : n 13 >>>> IlePheThrThrMetGluValThrLysSerSerGlyGlyAspIleThrG : 606 ||||||||||||:!!|||||||||||||||||||||||||||||||||| ++IlePheThrThrLeuGluValThrLysSerSerGlyGlyAspIleThrG 51611 : .........agATCTTCACCACTCTGGAGGTGACCAAGAGCTCCGGTGGAGACATCACCC : 50017 607 : lnSerGlyCysUnkGly : 611 ||||||||||| ||| lnSerGlyCys***Gly 50016 : AGTCCGGCTGCTGAGGT : 50000 vulgar: SPP00000661_2.0 59 611 . JXSJ01000728.1:subseq(83825,59425) 59272 49999 - 2353 M 37 111 5 0 2 I 0 625 3 0 2 M 36 108 5 0 2 I 0 202 3 0 2 M 24 72 S 0 1 5 0 2 I 0 82 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 132 3 0 2 S 1 2 M 47 141 G 2 0 5 0 2 I 0 362 3 0 2 M 38 114 S 0 2 5 0 2 I 0 574 3 0 2 S 1 1 M 75 225 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 37 111 5 0 2 I 0 1358 3 0 2 M 25 75 S 0 2 5 0 2 I 0 860 3 0 2 S 1 1 M 52 156 5 0 2 I 0 518 3 0 2 M 36 108 5 0 2 I 0 1136 3 0 2 M 32 96 5 0 2 I 0 109 3 0 2 M 45 135 5 0 2 I 0 1545 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local gene 50000 59272 2353 - . gene_id 1 ; sequence SPP00000661_2.0 ; gene_orientation + JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 59162 59272 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 59162 59272 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 59160 59161 . - . intron_id 1 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 58533 59161 . - . intron_id 1 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 58533 58534 . - . intron_id 0 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 58425 58532 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 58425 58532 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 58423 58424 . - . intron_id 2 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 58219 58424 . - . intron_id 2 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 58219 58220 . - . intron_id 1 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 58146 58218 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 58146 58218 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 58144 58145 . - . intron_id 3 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 58060 58145 . - . intron_id 3 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 58060 58061 . - . intron_id 2 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 57940 58059 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 57940 58059 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 57938 57939 . - . intron_id 4 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 57804 57939 . - . intron_id 4 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 57804 57805 . - . intron_id 3 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 57661 57803 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 57661 57803 . - . insertions 0 ; deletions 2 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 57659 57660 . - . intron_id 5 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 57295 57660 . - . intron_id 5 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 57295 57296 . - . intron_id 4 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 57179 57294 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 57179 57294 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 57177 57178 . - . intron_id 6 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 56601 57178 . - . intron_id 6 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 56601 56602 . - . intron_id 5 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 56373 56600 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 56373 56600 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 56371 56372 . - . intron_id 7 ; splice_site "GA" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 56301 56372 . - . intron_id 7 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 56301 56302 . - . intron_id 6 ; splice_site "ag" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 56189 56300 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 56189 56300 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 56187 56188 . - . intron_id 8 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 54827 56188 . - . intron_id 8 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 54827 54828 . - . intron_id 7 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 54750 54826 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 54750 54826 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 54748 54749 . - . intron_id 9 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 53886 54749 . - . intron_id 9 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 53886 53887 . - . intron_id 8 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 53729 53885 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 53729 53885 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 53727 53728 . - . intron_id 10 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 53207 53728 . - . intron_id 10 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 53207 53208 . - . intron_id 9 ; splice_site "ag" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 53099 53206 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 53099 53206 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 53097 53098 . - . intron_id 11 ; splice_site "gt" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 51959 53098 . - . intron_id 11 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 51959 51960 . - . intron_id 10 ; splice_site "ag" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 51863 51958 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 51863 51958 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 51861 51862 . - . intron_id 12 ; splice_site "gt" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 51750 51862 . - . intron_id 12 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 51750 51751 . - . intron_id 11 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 51615 51749 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 51615 51749 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice5 51613 51614 . - . intron_id 13 ; splice_site "GT" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local intron 50066 51614 . - . intron_id 13 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local splice3 50066 50067 . - . intron_id 12 ; splice_site "AG" JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local cds 50000 50065 . - . JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local exon 50000 50065 . - . insertions 0 ; deletions 0 JXSJ01000728.1:subseq(83825,59425) exonerate:protein2genome:local similarity 50000 59272 2353 - . alignment_id 1 ; Query SPP00000661_2.0 ; Align 59273 60 111 ; Align 58533 97 108 ; Align 58219 133 72 ; Align 58058 158 117 ; Align 57802 198 141 ; Align 57295 247 114 ; Align 56600 286 225 ; Align 56300 362 111 ; Align 54827 399 75 ; Align 53885 425 156 ; Align 53207 477 108 ; Align 51959 513 96 ; Align 51750 545 135 ; Align 50066 590 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis