Command line: [exonerate -m p2g --showtargetgff -q txnrd3_zf.aa.fa.canviat -t genometxnrd3_JXSJ01000302.1.fa] Hostname: [ws116078U] C4 Alignment: ------------ Query: SPP00000661_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Target: JXSJ01000302.1:subseq(266058,79392) Miichthys miiuy scaffold302, whole genome shotgun sequence Model: protein2genome:local Raw score: 2453 Query range: 0 -> 611 Target range: 49999 -> 60917 1 : MetProProIleGluAsnAspAlaGlyArgGluGlnIleArgSerLysIleLysGluLeu : 20 |||||||||||||||||||||.!!|||!:!.!.:!!:!!!:!!!!::!|||:!!:!!||| MetProProIleGluAsnAspThrGlyLysAsnGluLeuLysThrArgIleGlnGlnLeu 50000 : ATGCCTCCCATCGAGAACGACACCGGGAAGAATGAGCTCAAAACACGGATACAACAGCTG : 50057 21 : IleAspSerSerAlaValValValPheSerLysSerPheCysProPheCysValLysVal : 40 ||||||!!!!:! !|||:!!||||||||||||!!!!:!||||||!:!|||||||||||| IleAspThrAsnGlnValMetValPheSerLysThrTyrCysProTyrCysValLysVal 50058 : ATTGACACCAACCAAGTGATGGTTTTCAGCAAAACCTACTGTCCGTACTGTGTCAAGGTA : 50117 41 : Lys{As} >>>> Target Intron 1 >>>> {p}LeuPheLysGluLeuAsnVal : 49 !:!{ } 1484 bp { }! !!:!||| ! ! ! !:!! Arg{Tr}-+ ++{p}***TyrLysTyrTyrCysMet 50118 : AGG{TG}tt.........................ag{G}TAGTACAAATATTACTGCATG : 51628 50 : LysTyrAsnThrIleGluLeuAspLeuMet<->GluAspGlyThrAsnTyrGlnAspLeu : 68 |||! !!:!..!:!!.!. ! !||| ||||||||||||||||||! !!::!! LysCysSerValLeuHisGluProLeuCysProGluAspGlyThrAsnTyrLeuGluMet 51629 : AAATGTAGTGTTTTACATGAACCTCTCTGTCCAGAGGATGGAACCAACTACCTTGAGATG : 51688 69 : LeuHisGluMetThrGlyGlnLysThrValProAsnValPheIleAsnLysLysHisIle : 88 ||| !|||||||||||||||||||||||||||!:!:!!||||||||||||! !|||.!! LeuIleGluMetThrGlyGlnLysThrValProSerIlePheIleAsnLysThrHisPhe 51689 : CTGATCGAGATGACTGGACAGAAAACCGTCCCCAGCATCTTCATCAACAAGACGCATTTC : 51748 89 : GlyGlyCysAspAsnThrMetLys >>>> Target Intron 2 >>>> AlaHisL : 99 |||! !|||..!!!.||||||:!! 634 bp ||||||: GlyAspCysSerLysThrMetGln++ ++AlaHisG 51749 : GGTGACTGTAGCAAAACAATGCAGgt.........................agGCTCACC : 52415 100 : ysAspGlyValLeuGlnLysLeuLeuGlyGluGlySerGluValTyrAspTyrAspLeuI : 119 !!|||||| ||||||:::||||||...! !! !!:!:!!!.!|||||||||||||||| lnAspGlySerLeuGlnGlnLeuLeuSerGlyGluAsnLysAlaTyrAspTyrAspLeuI 52416 : AAGACggcagcctgcagcagctgctgagtGGAGAGAACAAGGCTTATGACTATGACTTGA : 52475 120 : leValIleGlyGlyGlySerGlyGlyLeuAlaCysSerLys >>>> Target Intro : 133 ||||||||||||||||||||||||||||||||||||||||| 204 bp leValIleGlyGlyGlySerGlyGlyLeuAlaCysSerLys++ 52476 : TTGTCATCGGAGGAGGATCTGGAGGCCTCGCCTGCTCAAAGgt................. : 52519 134 : n 3 >>>> AlaThrAlaThrLeuGlyLysLysValMetValLeuAspTyrValValPr : 149 ! !.!!|||! !||||||||||||..!||||||||||||||||||||||| ++GluAlaAlaMetLeuGlyLysLysThrMetValLeuAspTyrValValPr 52520 : ........agGAAGCTGCCATGTTGGGGAAGAAGACCATGGTACTGGACTATGTCGTGCC : 52769 150 : oThrProGlnGlyThrAlaTrp{G} >>>> Target Intron 4 >>>> {ly}Le : 158 |||||||:!!|||.!!:!!|||{|} 86 bp {||}|| oThrProLysGlyAlaSerTrp{G}++ ++{ly}Le 52770 : CACACCGAAGGGAGCCTCCTGG{G}gt.........................ag{GT}CT : 52882 159 : uGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnThrAlaLe : 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnThrAlaLe 52883 : CGGTGGAACATGTGTGAACGTGGGCTGCATTCCCAAGAAGCTGATGCACCAGACGGCCTT : 52942 179 : uLeuGlyThrAlaMetGluAspAlaArgLysPheGlyTrpGluPheAlaGluGln{V} : 197 ||||||||||||||||:!!|||||||||||||||||||||||||||! !||| !{|} uLeuGlyThrAlaMetGlnAspAlaArgLysPheGlyTrpGluPheAspGluThr{V}++ 52943 : GCTGGGCACCGCCATGCAGGACGCGCGCAAGTTTGGCTGGGAGTTTGACGAGACA{G}gt : 53000 198 : >>>> Target Intron 5 >>>> {al}ThrHisAsnTrpGluThrMetLysThrAl : 207 136 bp {||}! !|||||||||||||||||||||:!!|| ++{al}LysHisAsnTrpGluThrMetLysSerAl 53001 : .........................ag{TG}AAACACAACTGGGAGACGATGAAGTCGGC : 53165 208 : aValAsnAsnTyrIleGlySerLeuAsnTrpGlyTyrArgValSerLeuArgAspLysAs : 227 |||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||| aValAsnAsnTyrIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgAspLysAs 53166 : GGTGAACAACTACATTGGCTCATTGAACTGGGGCTACAGGGTGGCACTGAGAGACAAGAA : 53225 228 : nValAsnTyrValAsnAlaTyrAlaGluPheValGluProHisLysIleLysAlaSer : 247 |||||||||||||||||||||||||||||||:!!!!:||||||||||||||| nValAsnTyrValAsnAlaTyrAlaGluPheIleAspProHisLysIleLys------++ 53226 : CGTCAATTATGTCAACGCCTATGCAGAGTTCATTGATCCTCATAAAATCAAG------gt : 53279 248 : >>>> Target Intron 6 >>>> AlaThrAsnLysArgGlyLysGluThrPheTyr : 257 366 bp ||||||||||||||||||||||||||||||||| ++AlaThrAsnLysArgGlyLysGluThrPheTyr 53280 : .........................agGCAACAAACAAACGGGGAAAGgagacattttac : 53675 258 : ThrAlaAlaGlnPheValLeuAlaThrGlyGluArgProArgTyrLeuGlyIleProGly : 277 |||||||||:!!|||:!!|||||||||||||||||||||||||||||||||||||||||| ThrAlaAlaLysPheIleLeuAlaThrGlyGluArgProArgTyrLeuGlyIleProGly 53676 : acagcgGCTAAGTTTATCTTAGCTACGGGCGAGAGGCCGCGCTACCTGGGCATCCCTGGA : 53735 278 : AspLysGluPheCysIleThr{Se} >>>> Target Intron 7 >>>> {r}Asp : 286 |||||||||!:!|||||||||{||} 578 bp {|}||| AspLysGluTyrCysIleThr{Se}++ ++{r}Asp 53736 : GACAAGGAGTACTGCATCACC{AG}gt.........................ag{T}GAC : 54340 287 : AspLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrVal : 306 ||||||||||||||| !!||||||||||||||||||||||||:!!||||||||||||||| AspLeuPheSerLeuSerTyrCysProGlyLysThrLeuValIleGlyAlaSerTyrVal 54341 : GACCTCTTCTCGTTGTCCTACTGCCCGGGAAAGACCCTGGTGATCGGGGCGTCGTACGTG : 54400 307 : AlaLeuGluCysGlyGlyPheLeuAlaGlyLeuGlyLeuAspValThrIleMetValArg : 326 ||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||| AlaLeuGluCysGlyGlyPheLeuAlaGlyLeuGlyLeuAspValThrValMetValArg 54401 : GCGCTGGAGTGCGGCGGCTTCCTGGCCGGCCTGGGTCTTGACGTCACCGTCATGGTCCGG : 54460 327 : SerIleLeuLeuArgGlyPheAspGlnAspMetAlaAspArgAlaGlyGluTyrMetGlu : 346 ||||||||||||||||||||||||||||||||||||:!!||||||||||||:!!|||||| SerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnArgAlaGlyGluHisMetGlu 54461 : TCCATCCTGCTGAGGGGCTTCGACCAGGACATGGCCAACCGCGCTGGAGAGCACATGGAG : 54520 347 : ThrHisGlyValLysPheLeuArgLysPheValProThrLys{Va} >>>> Target : 361 !||||||||||||||||||||||||!:!||||||! !|||{||} 72 GluHisGlyValLysPheLeuArgLysTyrValProIleLys{Va}+- 54521 : GAGCACGGCGTAAAGTTCCTCCGCAAATATGTCCCCATAAAG{GT}ga............ : 54569 362 : Intron 8 >>>> {l}GlyCysIlePheProGlnIleGluGlnLeuGluAlaGlyThr : 375 bp {|} |||:::|||:::||||||||||||||| ++{l}HisValCysValCysGlnValGluGluLeuGluAlaGlyThr 54570 : .............ag{a}catgtctgtgtgtgtcaggtggaggagctggaagCAGGCACT : 54679 376 : ProGlyArgIleLysValThrAlaLysSerThrGluSerGluGluValPheGluGlyGlu : 395 |||||||||:!:||||||||||||||||||||||||!!!!!:|||:!!.!!||||||||| ProGlyArgLeuLysValThrAlaLysSerThrGluThrAspGluIleIleGluGlyGlu 54680 : CCTGGCAGGCTGAAGGTGACAGCGAAGTCCACAGAAACCGATGAGATCATCGAGGGAGAG : 54739 396 : TyrAsnThr >>>> Target Intron 9 >>>> ValLeuIleAlaValGlyArgA : 406 ||||||||| 1360 bp |||||||||||||||||||||| TyrAsnThr++ ++ValLeuIleAlaValGlyArgA 54740 : TACAACACCgt.........................agGTCTTGATAGCAGTGGGCCGAG : 56132 407 : spAlaCysThrGlyLysIleGlyLeuAspLysAlaGlyValLysIleAsnGlu{Ly} > : 424 |||||||||||! !||||||||||||||||||.!!|||||||||:!!||| {||} spAlaCysThrAspLysIleGlyLeuAspLysThrGlyValLysValAsnPro{Ly}++ 56133 : ACGCGTGCACGGACAAGATTGGCCTGGACAAGACAGGGGTCAAAGTCAACCCT{AA}gt. : 56190 425 : >>> Target Intron 10 >>>> {s}AsnGlyLysValProValAsnAspGluGlu : 434 866 bp {|}|||||||||:!!|||||||||||||||||| ++{s}AsnGlyLysIleProValAsnAspGluGlu 56191 : .........................ag{G}AATGGAAAAATCCCAGTGAACGATGAAGAG : 57082 435 : GlnThrAsnValProHisIleTyrAlaIleGlyAspIleLeuGluGlyLysTrpGluLeu : 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnThrAsnValProHisIleTyrAlaIleGlyAspIleLeuGluGlyLysTrpGluLeu 57083 : CAGACCAACGTGCCCCACATCTACGCCATTGGAGACATTCTGGAAGGCAAGTGGGAGCTG : 57142 455 : ThrProValAlaIleGlnAlaGlyLysLeuLeuAlaArgArgLeuTyrAlaGlyAlaThr : 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||! ! ThrProValAlaIleGlnAlaGlyLysLeuLeuAlaArgArgLeuTyrAlaGlyAlaLys 57143 : ACACCTGTCGCCATCCAGGCTGGCAAGCTGCTGGCACGACGCCTCTACGCAGGCGCCAAA : 57202 475 : MetLys >>>> Target Intron 11 >>>> CysAspTyrValAsnValProThr : 484 :!:||| 522 bp |||||||||:!!|||||||||||| LeuLys++ ++CysAspTyrIleAsnValProThr 57203 : CTCAAGgt..........................agtgtgaCTACATCAACGTTCCCACC : 57754 485 : ThrValPheThrProMetGluTyrGlySerCysGlyHisProGluGluLysAlaIleGln : 504 |||||||||||||||:!!|||||||||:!!||||||! !!||||||!:!|||! !:!! ThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGluArgAlaThrGlu 57755 : ACCGTCTTCACCCCGCTGGAGTACGGTGCCTGCGGTCTGTCAGAGGAGAGAGCCACCGAG : 57814 505 : MetTyrGlyGlnGluAsnLeuGlu >>>> Target Intron 12 >>>> ValTyr : 514 :!!|||||||||!!:|||:!:||| 1142 bp |||::: LeuTyrGlyGlnAspAsnIleGlu++ ++ValPhe 57815 : CTGTACGGGCAGGACAACATcgaggt..........................aggtgttc : 58986 515 : HisSerLeuPheTrpProLeuGluPheThrValProGlyArgAspAsnAsnLysCysTyr : 534 |||||||||||||||||||||||||||||||||||||||||||||||||||!:!|||||| HisSerLeuPheTrpProLeuGluPheThrValProGlyArgAspAsnAsnArgCysTyr 58987 : cACAGTCTGTTCTGGCCTCTGGAGTTCACCGTGCCCGGCAGAGACAACAACAGATGCTAC : 59046 535 : AlaLysIleIleCysAsnLysLeuAspAsn >>>> Target Intron 13 >>>> : 545 |||||||||||||||||||||||||||!:! 113 bp AlaLysIleIleCysAsnLysLeuAspSer++ ++ 59047 : GCCAAGATCATCTGCAATAAACTGGACAGCgt..........................ag : 59190 546 : LeuArgValIleGlyPheHisTyrLeuGlyProAsnAlaGlyGluValThrGlnGlyPhe : 564 !||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AspArgValIleGlyPheHisTyrLeuGlyProAsnAlaGlyGluValThrGlnGlyPhe 59191 : GACCGAGTCATTGGGTTCCACTATCTGGGTCCAAATGCCGGAGAGGTGACGCAGGGCTTC : 59249 565 : GlyAlaAlaMetLysCysGlyIleThrLysAspGlnLeuAspAsnThrIleGlyIleHis : 584 ||| !||||||||||||||| !||||||!!:|||||||||!:!||||||||||||||| GlyIleAlaMetLysCysGlyAlaThrLysGluGlnLeuAspSerThrIleGlyIleHis 59250 : GGCATAGCCATGAAATGCGGCGCCACTAAAGAGCAGCTGGACAGCACCATCGGCATCCAC : 59309 585 : ProThrCysAlaGlu >>>> Target Intron 14 >>>> IlePheThrThrMet : 594 ||||||||||||||| 1525 bp ||||||||||||:!! ProThrCysAlaGlu++ ++IlePheThrThrLeu 59310 : CCGACCTGTGCTGAGgt..........................agATCTTCACCACTCTG : 60864 595 : GluValThrLysSerSerGlyGlyAspIleThrGlnSerGlyCysUnkGly : 611 ||||||||||||||||||||||||||||||||||||||||||||| ||| GluValThrLysSerSerGlyGlyAspIleThrGlnSerGlyCys***Gly 60865 : GAGGTGACCAAGAGCTCCGGTGGAGACATCACCCAGTCCGGCTGCTGAGGT : 60917 vulgar: SPP00000661_2.0 0 611 . JXSJ01000302.1:subseq(266058,79392) 49999 60917 + 2453 M 41 123 S 0 2 5 0 2 I 0 1480 3 0 2 S 1 1 M 17 51 G 0 3 M 37 111 5 0 2 I 0 630 3 0 2 M 36 108 5 0 2 I 0 200 3 0 2 M 24 72 S 0 1 5 0 2 I 0 82 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 132 3 0 2 S 1 2 M 47 141 G 2 0 5 0 2 I 0 362 3 0 2 M 38 114 S 0 2 5 0 2 I 0 574 3 0 2 S 1 1 M 75 225 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 37 111 5 0 2 I 0 1356 3 0 2 M 25 75 S 0 2 5 0 2 I 0 862 3 0 2 S 1 1 M 52 156 5 0 2 I 0 518 3 0 2 M 36 108 5 0 2 I 0 1138 3 0 2 M 32 96 5 0 2 I 0 109 3 0 2 M 45 135 5 0 2 I 0 1521 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local gene 50000 60917 2453 + . gene_id 1 ; sequence SPP00000661_2.0 ; gene_orientation + JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 50000 50124 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 50000 50124 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 50125 50126 . + . intron_id 1 ; splice_site "TT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 50125 51608 . + . intron_id 1 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 51607 51608 . + . intron_id 0 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 51609 51774 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 51609 51774 . + . insertions 3 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 51775 51776 . + . intron_id 2 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 51775 52408 . + . intron_id 2 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 52407 52408 . + . intron_id 1 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 52409 52516 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 52409 52516 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 52517 52518 . + . intron_id 3 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 52517 52720 . + . intron_id 3 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 52719 52720 . + . intron_id 2 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 52721 52793 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 52721 52793 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 52794 52795 . + . intron_id 4 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 52794 52879 . + . intron_id 4 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 52878 52879 . + . intron_id 3 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 52880 52999 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 52880 52999 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 53000 53001 . + . intron_id 5 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 53000 53135 . + . intron_id 5 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 53134 53135 . + . intron_id 4 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 53136 53278 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 53136 53278 . + . insertions 0 ; deletions 2 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 53279 53280 . + . intron_id 6 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 53279 53644 . + . intron_id 6 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 53643 53644 . + . intron_id 5 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 53645 53760 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 53645 53760 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 53761 53762 . + . intron_id 7 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 53761 54338 . + . intron_id 7 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 54337 54338 . + . intron_id 6 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 54339 54566 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 54339 54566 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 54567 54568 . + . intron_id 8 ; splice_site "GA" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 54567 54638 . + . intron_id 8 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 54637 54638 . + . intron_id 7 ; splice_site "ag" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 54639 54750 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 54639 54750 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 54751 54752 . + . intron_id 9 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 54751 56110 . + . intron_id 9 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 56109 56110 . + . intron_id 8 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 56111 56187 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 56111 56187 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 56188 56189 . + . intron_id 10 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 56188 57053 . + . intron_id 10 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 57052 57053 . + . intron_id 9 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 57054 57210 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 57054 57210 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 57211 57212 . + . intron_id 11 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 57211 57732 . + . intron_id 11 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 57731 57732 . + . intron_id 10 ; splice_site "ag" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 57733 57840 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 57733 57840 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 57841 57842 . + . intron_id 12 ; splice_site "gt" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 57841 58982 . + . intron_id 12 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 58981 58982 . + . intron_id 11 ; splice_site "ag" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 58983 59078 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 58983 59078 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 59079 59080 . + . intron_id 13 ; splice_site "gt" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 59079 59191 . + . intron_id 13 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 59190 59191 . + . intron_id 12 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 59192 59326 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 59192 59326 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice5 59327 59328 . + . intron_id 14 ; splice_site "GT" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local intron 59327 60851 . + . intron_id 14 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local splice3 60850 60851 . + . intron_id 13 ; splice_site "AG" JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local cds 60852 60917 . + . JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local exon 60852 60917 . + . insertions 0 ; deletions 0 JXSJ01000302.1:subseq(266058,79392) exonerate:protein2genome:local similarity 50000 60917 2453 + . alignment_id 1 ; Query SPP00000661_2.0 ; Align 50000 1 123 ; Align 51610 43 51 ; Align 51664 60 111 ; Align 52409 97 108 ; Align 52721 133 72 ; Align 52882 158 117 ; Align 53138 198 141 ; Align 53645 247 114 ; Align 54340 286 225 ; Align 54640 362 111 ; Align 56111 399 75 ; Align 57055 425 156 ; Align 57733 477 108 ; Align 58983 513 96 ; Align 59192 545 135 ; Align 60852 590 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis