TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000661_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Zebrafish Length=611 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000728.1 Miichthys miiuy scaffold728, whole genome shotgu... 192 2e-49 JXSJ01000302.1 Miichthys miiuy scaffold302, whole genome shotgu... 192 2e-49 JXSJ01000182.1 Miichthys miiuy scaffold182, whole genome shotgu... 76.3 1e-19 JXSJ01000073.1 Miichthys miiuy scaffold73, whole genome shotgun... 85.1 1e-15 JXSJ01001219.1 Miichthys miiuy scaffold1219, whole genome shotg... 59.7 8e-08 JXSJ01000003.1 Miichthys miiuy scaffold3, whole genome shotgun ... 49.7 1e-04 JXSJ01000235.1 Miichthys miiuy scaffold235, whole genome shotgu... 45.4 0.002 JXSJ01000028.1 Miichthys miiuy scaffold28, whole genome shotgun... 45.1 0.003 > JXSJ01000728.1 Miichthys miiuy scaffold728, whole genome shotgun sequence Length=143256 Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/140 (69%), Positives = 109/140 (78%), Gaps = 24/140 (17%) Frame = -1 Query 284 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 343 TSDDLFSL YCPGKTLV+GASYVALECGGFLAGLGLDVT+MVRSILLRGFDQDMA+RAGE Sbjct 140430 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 140251 Query 344 YMETHGVKFLRKFVPTKVGC--IFP----------------------QIEQLEAGTPGRI 379 +ME HGVKFLRK+VP KV + P Q+E+LEAGTPGR+ Sbjct 140250 HMEEHGVKFLRKYVPIKVSVNQVLPQRKHTQ*GLSLN*TFDRHVCVCQVEELEAGTPGRL 140071 Query 380 KVTAKSTESEEVFEGEYNTV 399 KVTAKSTE++E+ EGEYNTV Sbjct 140070 KVTAKSTETDEIIEGEYNTV 140011 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 10/107 (9%) Frame = -1 Query 376 PGRIKVTAKSTESEEVFE---GEYNTVLIAVGRDACTGKIGLDKAGV---KINEKNGKVP 429 P ++A S +S +V+ + +I++ C + L+++ V + +NGK+P Sbjct 137862 PTSHSISASSMDSHKVYP*VPEIFRVKIISL----CNNGVKLNQSAVCSSSLTSRNGKIP 137695 Query 430 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMK 476 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGA +K Sbjct 137694 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGAKLK 137554 Score = 82.0 bits (201), Expect(2) = 5e-21, Method: Compositional matrix adjust. Identities = 37/39 (95%), Positives = 38/39 (97%), Gaps = 0/39 (0%) Frame = -1 Query 157 GLGGTCVNVGCIPKKLMHQTALLGTAMEDARKFGWEFAE 195 GLGGTCVNVGCIPKKLMHQTALLGTAM+DARKFGWEF E Sbjct 141885 GLGGTCVNVGCIPKKLMHQTALLGTAMQDARKFGWEFDE 141769 Score = 42.7 bits (99), Expect(2) = 5e-21, Method: Compositional matrix adjust. Identities = 18/23 (78%), Positives = 20/23 (87%), Gaps = 0/23 (0%) Frame = -2 Query 135 ATLGKKVMVLDYVVPTPQGTAWG 157 A LGKK MVLDYVVPTP+G +WG Sbjct 142037 AMLGKKTMVLDYVVPTPKGASWG 141969 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/50 (88%), Positives = 48/50 (96%), Gaps = 0/50 (0%) Frame = -2 Query 197 VTHNWETMKTAVNNYIGSLNWGYRVSLRDKNVNYVNAYAEFVEPHKIKAS 246 V HNWETMK+AVNNYIGSLNWGYRV+LRDKNVNYVNAYAEF++PHKIK S Sbjct 141629 VKHNWETMKSAVNNYIGSLNWGYRVALRDKNVNYVNAYAEFIDPHKIKVS 141480 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/95 (54%), Positives = 65/95 (68%), Gaps = 12/95 (13%) Frame = -3 Query 503 IQMYGQENLEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNL-------RVIGFHYLGP 555 +Q GQ + +Y LF+ L +PG ++ ++C+ D + RVIGFHYLGP Sbjct 135706 LQ*TGQRKIFIY--LFF-LTHQLPGATDS--LYPMLCHMTDLVLL*ML*DRVIGFHYLGP 135542 Query 556 NAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI 590 NAGEVTQGFG AMKCG TK+QLD+TIGIHPTCAE+ Sbjct 135541 NAGEVTQGFGIAMKCGATKEQLDSTIGIHPTCAEV 135437 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/39 (90%), Positives = 38/39 (97%), Gaps = 0/39 (0%) Frame = -2 Query 246 SATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 284 ATNKRGKETFYTAA+F+LATGERPRYLGIPGDKE+CIT Sbjct 141122 QATNKRGKETFYTAAKFILATGERPRYLGIPGDKEYCIT 141006 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = -1 Query 512 EVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRVIGFHYL 553 +V+HSLFWPLEFTVPGRDNN+CYAKIICNKLD++R + ++ Sbjct 135786 QVFHSLFWPLEFTVPGRDNNRCYAKIICNKLDSVRFLFIYFF 135661 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 26/39 (67%), Positives = 36/39 (92%), Gaps = 0/39 (0%) Frame = -1 Query 475 MKCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEV 513 ++CDY+NVPTTVFTP+EYG+CG EE+A ++YGQ+N+EV Sbjct 137037 VQCDYINVPTTVFTPLEYGACGLSEERATELYGQDNIEV 136921 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/39 (72%), Positives = 33/39 (85%), Gaps = 0/39 (0%) Frame = -3 Query 96 KAHKDGVLQKLLGEGSEVYDYDLIVIGGGSGGLACSKAT 134 +AH+DG LQ+LL ++ YDYDLIVIGGGSGGLACSK T Sbjct 142360 QAHQDGSLQQLLSGENKAYDYDLIVIGGGSGGLACSKVT 142244 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 0/43 (0%) Frame = -1 Query 60 EDGTNYQDLLHEMTGQKTVPNVFINKKHIGGCDNTMKAHKDGV 102 EDGTNY ++L EMTGQKTVP++FINK H G C TM+ V Sbjct 143097 EDGTNYLEMLIEMTGQKTVPSIFINKTHFGDCSKTMQVRNKCV 142969 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/26 (85%), Positives = 23/26 (88%), Gaps = 0/26 (0%) Frame = -1 Query 399 VLIAVGRDACTGKIGLDKAGVKINEK 424 VLIAVGRDACT KIGLDK GVK+N K Sbjct 138651 VLIAVGRDACTDKIGLDKTGVKVNPK 138574 Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/22 (91%), Positives = 21/22 (95%), Gaps = 0/22 (0%) Frame = -1 Query 590 IFTTMEVTKSSGGDITQSGCXG 611 IFTT+EVTKSSGGDITQSGC G Sbjct 133890 IFTTLEVTKSSGGDITQSGC*G 133825 > JXSJ01000302.1 Miichthys miiuy scaffold302, whole genome shotgun sequence Length=345455 Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/140 (69%), Positives = 109/140 (78%), Gaps = 24/140 (17%) Frame = +1 Query 284 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 343 TSDDLFSL YCPGKTLV+GASYVALECGGFLAGLGLDVT+MVRSILLRGFDQDMA+RAGE Sbjct 320392 TSDDLFSLSYCPGKTLVIGASYVALECGGFLAGLGLDVTVMVRSILLRGFDQDMANRAGE 320571 Query 344 YMETHGVKFLRKFVPTKVGC--IFP----------------------QIEQLEAGTPGRI 379 +ME HGVKFLRK+VP KV + P Q+E+LEAGTPGR+ Sbjct 320572 HMEEHGVKFLRKYVPIKVSVNQVLPQRKHTQ*GLSLN*TFDRHVCVCQVEELEAGTPGRL 320751 Query 380 KVTAKSTESEEVFEGEYNTV 399 KVTAKSTE++E+ EGEYNTV Sbjct 320752 KVTAKSTETDEIIEGEYNTV 320811 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 10/107 (9%) Frame = +1 Query 376 PGRIKVTAKSTESEEVFE---GEYNTVLIAVGRDACTGKIGLDKAGV---KINEKNGKVP 429 P ++A S +S +V+ + +I++ C + L+++ V + +NGK+P Sbjct 322960 PTSHSISASSMDSHKVYP*VPEIFRVKIISL----CNNGVKLNQSAVCSSSLTSRNGKIP 323127 Query 430 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMK 476 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGA +K Sbjct 323128 VNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLYAGAKLK 323268 Score = 82.0 bits (201), Expect(2) = 5e-21, Method: Compositional matrix adjust. Identities = 37/39 (95%), Positives = 38/39 (97%), Gaps = 0/39 (0%) Frame = +1 Query 157 GLGGTCVNVGCIPKKLMHQTALLGTAMEDARKFGWEFAE 195 GLGGTCVNVGCIPKKLMHQTALLGTAM+DARKFGWEF E Sbjct 318937 GLGGTCVNVGCIPKKLMHQTALLGTAMQDARKFGWEFDE 319053 Score = 42.7 bits (99), Expect(2) = 5e-21, Method: Compositional matrix adjust. Identities = 18/23 (78%), Positives = 20/23 (87%), Gaps = 0/23 (0%) Frame = +2 Query 135 ATLGKKVMVLDYVVPTPQGTAWG 157 A LGKK MVLDYVVPTP+G +WG Sbjct 318785 AMLGKKTMVLDYVVPTPKGASWG 318853 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/50 (88%), Positives = 48/50 (96%), Gaps = 0/50 (0%) Frame = +2 Query 197 VTHNWETMKTAVNNYIGSLNWGYRVSLRDKNVNYVNAYAEFVEPHKIKAS 246 V HNWETMK+AVNNYIGSLNWGYRV+LRDKNVNYVNAYAEF++PHKIK S Sbjct 319193 VKHNWETMKSAVNNYIGSLNWGYRVALRDKNVNYVNAYAEFIDPHKIKVS 319342 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/95 (54%), Positives = 65/95 (68%), Gaps = 12/95 (13%) Frame = +2 Query 503 IQMYGQENLEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNL-------RVIGFHYLGP 555 +Q GQ + +Y LF+ L +PG ++ ++C+ D + RVIGFHYLGP Sbjct 325118 LQ*TGQRKIFIY--LFF-LTHQLPGATDS--LYPMLCHMTDLVLL*ML*DRVIGFHYLGP 325282 Query 556 NAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI 590 NAGEVTQGFG AMKCG TK+QLD+TIGIHPTCAE+ Sbjct 325283 NAGEVTQGFGIAMKCGATKEQLDSTIGIHPTCAEV 325387 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/39 (90%), Positives = 38/39 (97%), Gaps = 0/39 (0%) Frame = +2 Query 246 SATNKRGKETFYTAAQFVLATGERPRYLGIPGDKEFCIT 284 ATNKRGKETFYTAA+F+LATGERPRYLGIPGDKE+CIT Sbjct 319700 QATNKRGKETFYTAAKFILATGERPRYLGIPGDKEYCIT 319816 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = +3 Query 512 EVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRVIGFHYL 553 +V+HSLFWPLEFTVPGRDNN+CYAKIICNKLD++R + ++ Sbjct 325038 QVFHSLFWPLEFTVPGRDNNRCYAKIICNKLDSVRFLFIYFF 325163 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 26/39 (67%), Positives = 36/39 (92%), Gaps = 0/39 (0%) Frame = +1 Query 475 MKCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEV 513 ++CDY+NVPTTVFTP+EYG+CG EE+A ++YGQ+N+EV Sbjct 323785 VQCDYINVPTTVFTPLEYGACGLSEERATELYGQDNIEV 323901 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 24/44 (55%), Positives = 39/44 (89%), Gaps = 0/44 (0%) Frame = +2 Query 1 MPPIENDAGREQIRSKIKELIDSSAVVVFSKSFCPFCVKVKDLF 44 MPPIEND G+ +++++I++LID++ V+VFSK++CP+CVKV+ F Sbjct 316058 MPPIENDTGKNELKTRIQQLIDTNQVMVFSKTYCPYCVKVRCSF 316189 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/39 (72%), Positives = 33/39 (85%), Gaps = 0/39 (0%) Frame = +2 Query 96 KAHKDGVLQKLLGEGSEVYDYDLIVIGGGSGGLACSKAT 134 +AH+DG LQ+LL ++ YDYDLIVIGGGSGGLACSK T Sbjct 318464 QAHQDGSLQQLLSGENKAYDYDLIVIGGGSGGLACSKVT 318580 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 0/43 (0%) Frame = +1 Query 60 EDGTNYQDLLHEMTGQKTVPNVFINKKHIGGCDNTMKAHKDGV 102 EDGTNY ++L EMTGQKTVP++FINK H G C TM+ V Sbjct 317722 EDGTNYLEMLIEMTGQKTVPSIFINKTHFGDCSKTMQVRNKCV 317850 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/26 (85%), Positives = 23/26 (88%), Gaps = 0/26 (0%) Frame = +2 Query 399 VLIAVGRDACTGKIGLDKAGVKINEK 424 VLIAVGRDACT KIGLDK GVK+N K Sbjct 322169 VLIAVGRDACTDKIGLDKTGVKVNPK 322246 Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/22 (91%), Positives = 21/22 (95%), Gaps = 0/22 (0%) Frame = +3 Query 590 IFTTMEVTKSSGGDITQSGCXG 611 IFTT+EVTKSSGGDITQSGC G Sbjct 326910 IFTTLEVTKSSGGDITQSGC*G 326975 > JXSJ01000182.1 Miichthys miiuy scaffold182, whole genome shotgun sequence Length=551014 Score = 76.3 bits (186), Expect(2) = 1e-19, Method: Compositional matrix adjust. Identities = 42/78 (54%), Positives = 50/78 (64%), Gaps = 0/78 (0%) Frame = +2 Query 284 TSDDLFSLPYCPGKTLVVGASYVALECGGFLAGLGLDVTIMVRSILLRGFDQDMADRAGE 343 +S+DL SL PG+TLVVG S LEC GFL GLGL VTIM + LL GFDQ MA + Sbjct 4214 SSEDLLSLTQPPGRTLVVGGSAEGLECAGFLFGLGLPVTIMPQPHLLPGFDQGMAQKIEN 4393 Query 344 YMETHGVKFLRKFVPTKV 361 +M +GV FL +KV Sbjct 4394 HMIVNGVDFLYNCSLSKV 4447 Score = 43.9 bits (102), Expect(2) = 1e-19, Method: Compositional matrix adjust. Identities = 27/80 (34%), Positives = 42/80 (53%), Gaps = 11/80 (14%) Frame = +1 Query 211 YIGSLNWGYRVSL--RDKNVNY----VNAYAEFVEPHKIKASATNKRGKETFYTAAQFVL 264 Y+ S WG L R++ + VN+++ F+ T G++ TA V+ Sbjct 3883 YLNSFTWGSNSLLN*RERFHRFLSSAVNSFSCFLINQ-----VTEVNGRKRRLTAETLVI 4047 Query 265 ATGERPRYLGIPGDKEFCIT 284 ATG R +YL IPGD+E+C+T Sbjct 4048 ATGGRRQYLDIPGDREYCLT 4107 Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/112 (34%), Positives = 52/112 (46%), Gaps = 39/112 (35%) Frame = +2 Query 476 KCDYVNVPTTVFTPMEYGSCGHPEEKAIQMYGQEN------------------------- 510 +CDY NVPT V TPMEY +CG EEKA +G+ N Sbjct 6719 QCDYTNVPTVVLTPMEYAACGLSEEKATLTFGEPNVEVHSHSHTHTHTHTQAMHTQTNKS 6898 Query 511 --------------LEVYHSLFWPLEFTVPGRDNNKCYAKIICNKLDNLRVI 548 L+VYHS +WPLE+ +P R+ CY K+IC+ D++ + Sbjct 6899 SHLVK*SKVKMSALLQVYHSHYWPLEWELPARNKYSCYVKVICHIPDHVMFL 7054 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/52 (60%), Positives = 41/52 (79%), Gaps = 3/52 (6%) Frame = +2 Query 546 RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEI---FTTM 594 RV+G H +GPNAG++ QGF AAMKCG+TK QLD T+GIHP A++ F+T+ Sbjct 8621 RVVGLHVMGPNAGDILQGFVAAMKCGLTKQQLDATVGIHPGTAQVSIPFSTL 8776 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/104 (33%), Positives = 52/104 (50%), Gaps = 32/104 (31%) Frame = +3 Query 399 VLIAVGRDACTGKIGLDKAGVKINEK--------------------------------NG 426 VL+AVGR A T IGL+ GV+ N++ G Sbjct 6162 VLLAVGRKASTSDIGLECVGVQCNQECV*SVHIHFGFNLGAEGFVKVLCVCVCVCVCSTG 6341 Query 427 KVPVNDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLARRLY 470 ++ VN+ ++T+V +IYAIG + G+ T +++ +G LLARRLY Sbjct 6342 RILVNERDETSVDNIYAIGSVQHGRPSTTGLSVHSGTLLARRLY 6473 > JXSJ01000073.1 Miichthys miiuy scaffold73, whole genome shotgun sequence Length=1482782 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/49 (73%), Positives = 43/49 (88%), Gaps = 0/49 (0%) Frame = -1 Query 153 GTAWGLGGTCVNVGCIPKKLMHQTALLGTAMEDARKFGWEFAEQVTHNW 201 GT WGLGGTCVNVGCIPKKLMHQ ALLGTA++DA+K+GW+ + V H+W Sbjct 530768 GTKWGLGGTCVNVGCIPKKLMHQAALLGTAVKDAKKYGWQISGPVCHDW 530622 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 0/32 (0%) Frame = -3 Query 304 SYVALECGGFLAGLGLDVTIMVRSILLRGFDQ 335 S VALEC GFL G+GLD T+M RSI LRGFDQ Sbjct 523977 SDVALECAGFLTGIGLDTTVMARSIALRGFDQ 523882 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 33/46 (72%), Gaps = 0/46 (0%) Frame = -1 Query 404 GRDACTGKIGLDKAGVKINEKNGKVPVNDEEQTNVPHIYAIGDILE 449 GR T +GLD+ GV++N++ GK+ V +E T+VP+IYA GDI E Sbjct 517607 GRAPETKALGLDRLGVQLNKETGKIVVGADESTSVPNIYAFGDIGE 517470 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 0/44 (0%) Frame = -2 Query 568 MKCGITKDQLDNTIGIHPTCAEIFTTMEVTKSSGGDITQSGCXG 611 +CG T L T+GIHPT AE T + +TK SG D T +GC G Sbjct 512788 FRCGATYSHLSQTVGIHPTSAEEITKVNITKRSGLDATVTGC*G 512657 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/89 (35%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Frame = -1 Query 326 RSILLRGFDQDMADRAGEYMETHGVKFLRKFVPTKVGCIFPQIEQLEAGTPGRIKVTAKS 385 R IL F Q MA YME +G KF K VP +V ++L +G ++VT Sbjct 523814 R*ILFFWFVQQMAGLVTGYMEEYGTKFAWKCVPKRV-------DKLSSGA---LQVTWTD 523665 Query 386 TESEEVFEGEYNTVLIAVGRDACTGKIGL 414 T + + Y+TVL AVG C G+ Sbjct 523664 TRTGNEHKDTYDTVLWAVGESVCGSHFGV 523578 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (4%) Frame = -1 Query 464 LLARRLYAGATMKCDYV-NVPTTVFTPMEYGSCGHPEEKAIQMYGQENLEVYHSLFW 519 ++ L A + C +V VPTTVFTP+EYG G EE+A + G++ +EV ++W Sbjct 515654 IIVHYLSANQFIVCVWVCQVPTTVFTPLEYGCVGLSEEEAEKRLGKDGIEV-RCMWW 515487 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 24/33 (73%), Gaps = 0/33 (0%) Frame = -3 Query 537 IICNKLDNLRVIGFHYLGPNAGEVTQGFGAAMK 569 ++C + +++++G H+ GPNAGEVTQGF + Sbjct 513477 VVCERGGDMKILGLHFTGPNAGEVTQGFALGFQ 513379 > JXSJ01001219.1 Miichthys miiuy scaffold1219, whole genome shotgun sequence Length=70440 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/61 (41%), Positives = 39/61 (64%), Gaps = 0/61 (0%) Frame = -2 Query 18 KELIDSSAVVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMTGQKT 77 +E++ + VV+FSK+ CP+C K++F E+ Y IELD DG Q+ L ++TG +T Sbjct 533 QEVVSQNCVVIFSKTTCPYCKMAKNVFSEIGATYKVIELDEHNDGRRLQEALAQVTGART 354 Query 78 V 78 V Sbjct 353 V 351 > JXSJ01000003.1 Miichthys miiuy scaffold3, whole genome shotgun sequence Length=10388247 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/58 (45%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +3 Query 540 NKLDNL--RVIGFHYLGPNAGEVTQGFGAAMKCGITKDQLDNTIGIHPTCAEIFTTME 595 +LD L +V+G H G E+ QGF A+ G TK D TI IHPT +E F TM Sbjct 4481259 QRLDCLFFQVVGLHMQGLGCDEMLQGFSVAITMGATKADFDKTIAIHPTSSEEFVTMR 4481432 > JXSJ01000235.1 Miichthys miiuy scaffold235, whole genome shotgun sequence Length=430991 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 38/140 (27%) Frame = +2 Query 397 NTVLIAVGRDACTGKIGLDKAGVKINEKNGKVPVNDEEQTNVPH---------------- 440 + +L+ +GR T +GLD G++++ + G++PVN+ QT VP Sbjct 197735 DVLLVCIGRRPYTENLGLDSVGIEVDNR-GRIPVNNRFQTKVPRYPRAQAG*RNLTVVVV 197911 Query 441 -------------------IYAIGDILEGKWELTPVAIQAGKLLARRLYAGATMKCDYVN 481 IYAIGD++ G L A G + + AG + DY Sbjct 197912 RPRELKHNKLLTLWFSLLSIYAIGDVVAGPM-LAHKAEDEGIICVEGM-AGGAVHIDYNC 198085 Query 482 VPTTVFTPMEYGSCGHPEEK 501 VP+ ++T E G EE+ Sbjct 198086 VPSVIYTHPEVAWVGKTEEQ 198145 > JXSJ01000028.1 Miichthys miiuy scaffold28, whole genome shotgun sequence Length=3583472 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (6%) Frame = +3 Query 16 KIKELIDSSA--VVVFSKSFCPFCVKVKDLFKELNVKYNTIELDLMEDGTNYQDLLHEMT 73 +++E SS V V+S CP C++ K L V +++ + + ++ ++T Sbjct 900366 QMEEFESSSPGRVTVYSIQGCPHCIQAKATLGRLGVTVCDVDIGRHPE---LRPMVKDLT 900536 Query 74 GQKTVPNVFINKKHIGGCDNTMKAHKDG 101 G+ TVP +F N H+GG D+ K + G Sbjct 900537 GRSTVPQIFFNNIHVGGNDDLQKLVRRG 900620 Lambda K H a alpha 0.318 0.137 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 99526978936 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40